Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 1.5e-189 666.0 325 100.0
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 3.0e-126 455.7 301 71.4
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 2.0e-122 443.0 310 65.8
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 2.7e-122 442.6 307 70.0
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 1.0e-121 440.7 321 65.1
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.0e-121 440.7 307 69.1
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 8.5e-121 437.6 315 67.9
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 6.1e-119 431.4 307 69.1
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 1.0e-118 430.6 307 68.1
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 1.8e-118 429.9 308 69.8
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 5.2e-118 428.3 305 67.9
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 6.8e-118 427.9 309 67.0
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 1.7e-116 423.3 331 63.7
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.8e-116 422.5 300 67.7
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.7e-116 422.2 300 67.3
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 8.3e-116 421.0 307 67.8
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 1.4e-115 420.2 294 69.4
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.8e-115 419.9 300 67.0
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 1.8e-115 419.9 314 66.6
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 2.4e-115 419.5 300 65.7
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 3.1e-115 419.1 300 65.7
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 5.4e-115 418.3 307 68.1
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.2e-114 417.2 307 67.4
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 3.8e-113 412.1 301 64.5
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 5.0e-113 411.8 309 66.3
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 6.5e-113 411.4 300 65.3
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 1.1e-112 410.6 297 63.3
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 1.5e-112 410.2 309 65.7
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.5e-112 410.2 307 65.1
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 1.9e-112 409.8 305 64.6
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.5e-112 409.5 319 65.5
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 3.2e-112 409.1 304 65.1
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 5.5e-112 408.3 319 65.2
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 9.4e-112 407.5 318 65.1
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.0e-110 404.1 300 64.3
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.4e-110 403.7 304 64.5
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 2.3e-110 402.9 300 63.7
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 3.0e-110 402.5 288 66.7
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 3.0e-110 402.5 315 62.2
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 6.8e-110 401.4 298 63.1
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 8.8e-110 401.0 279 65.9
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.5e-109 400.2 314 62.7
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 1.5e-109 400.2 287 65.9
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 2.6e-109 399.4 294 63.3
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 7.5e-109 397.9 298 62.8
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 7.5e-109 397.9 299 63.9
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 7.5e-109 397.9 298 63.1
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 2.2e-108 396.4 298 62.8
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 2.8e-108 396.0 316 63.6
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 3.7e-108 395.6 308 63.3
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 3.7e-108 395.6 295 65.4
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-107 394.0 298 61.7
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-107 394.0 298 61.7
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-107 394.0 298 61.7
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-107 394.0 298 61.7
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 1.1e-107 394.0 307 63.8
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 1.8e-107 393.3 309 62.8
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 3.1e-107 392.5 298 61.7
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 3.1e-107 392.5 300 63.3
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.6e-106 390.2 307 60.3
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 2.7e-106 389.4 307 63.2
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 3.5e-106 389.0 285 66.7
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 3.5e-106 389.0 318 61.9
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 5.9e-106 388.3 309 60.2
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 1.0e-105 387.5 302 62.3
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.3e-105 387.1 305 63.3
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 1.3e-105 387.1 390 53.3
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.3e-105 386.3 285 65.6
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 2.9e-105 386.0 289 62.3
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 5.0e-105 385.2 286 64.0
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 6.6e-105 384.8 298 62.4
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 1.1e-104 384.0 289 67.5
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 1.2e-103 380.6 288 63.5
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 1.2e-103 380.6 288 63.5
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 2.8e-103 379.4 315 61.0
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 1.2e-101 374.0 332 57.2
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.4e-99 367.1 312 60.9
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 1.7e-97 360.1 316 58.5
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.5e-96 357.1 292 59.2
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.0e-94 350.9 302 57.9
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 1.0e-94 350.9 317 57.4
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 2.4e-91 339.7 248 67.3
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 7.0e-91 338.2 259 65.3
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 5.8e-85 318.5 264 60.6
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 8.3e-84 314.7 291 53.3
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.4e-83 313.9 280 58.6
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 1.2e-82 310.8 306 52.9
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 1.1e-80 304.3 249 61.8
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 2.8e-79 299.7 227 63.9
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 3.6e-79 299.3 277 55.2
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 2.6e-77 293.1 295 51.9
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 5.8e-77 292.0 206 66.5
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 3.3e-72 276.2 302 52.3
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 4.7e-71 272.3 216 63.0
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 6.9e-70 268.5 205 61.5
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.1e-67 261.2 191 69.1
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 7.1e-67 258.5 181 70.7
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.0e-65 254.6 385 40.3
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.3e-65 254.2 240 55.8
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 3.9e-65 252.7 230 55.7
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 1.1e-64 251.1 293 46.8
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.5e-64 250.0 186 66.1
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.6e-63 247.3 186 65.6
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.6e-63 247.3 182 65.9
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.6e-63 246.1 182 66.5
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.2e-63 245.4 182 65.9
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 6.2e-63 245.4 182 65.9
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.3e-57 227.6 188 63.3
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.1e-55 218.4 182 61.5
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.9e-52 209.1 186 57.5
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.4e-52 208.4 195 56.9
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 4.6e-50 202.6 332 39.2
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.9e-44 182.6 105 73.3
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.1e-43 181.4 105 72.4
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 7.1e-43 178.7 289 41.9
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.3e-40 169.5 102 71.6
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 6.9e-38 162.2 181 47.0
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 7.2e-35 152.1 102 69.6
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 2.7e-34 150.2 192 45.3
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 1.1e-32 144.8 275 35.6
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.6e-31 141.0 114 61.4
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.7e-31 139.8 114 61.4
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 5.3e-30 136.0 293 34.5
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 6.9e-30 135.6 113 56.6
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 6.9e-30 135.6 108 63.9
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 8.5e-28 128.6 106 60.4
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 4.4e-24 116.3 63 76.2
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 2.6e-16 90.5 85 52.9
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 2.6e-16 90.5 85 52.9
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 3.5e-13 80.1 43 76.7
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.8e-07 59.7 39 64.1
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 4.1e-06 56.6 38 71.1
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 5.3e-06 56.2 97 44.3


User provided reference genes

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