Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 0.0e+00 1276.9 646 100.0
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 1.5e-302 1042.3 578 86.5
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 2.6e-302 1041.6 578 86.3
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 1.3e-301 1039.3 653 79.9
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 2.8e-301 1038.1 610 83.6
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 4.8e-301 1037.3 607 83.2
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 2.4e-300 1035.0 602 84.1
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 1.7e-298 1028.9 654 79.1
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 2.2e-298 1028.5 610 82.6
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 3.2e-297 1024.6 592 83.4
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 5.5e-297 1023.8 610 81.8
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 1.2e-296 1022.7 656 77.4
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 1.6e-296 1022.3 604 82.0
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.6e-296 1021.1 599 82.8
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 3.6e-296 1021.1 592 82.8
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.0e-295 1019.6 594 84.2
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 2.3e-295 1018.5 599 82.3
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.0e-295 1018.1 599 82.5
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 4.0e-295 1017.7 585 84.3
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 4.0e-295 1017.7 655 77.4
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 6.8e-295 1016.9 614 81.4
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 1.3e-293 1012.7 588 82.7
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 1.7e-293 1012.3 706 75.2
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.2e-293 1011.9 579 84.6
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.7e-293 1011.1 612 80.7
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 6.3e-293 1010.4 584 82.7
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 8.3e-293 1010.0 661 77.2
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 4.1e-292 1007.7 584 82.7
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 5.4e-292 1007.3 566 84.5
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 7.0e-292 1006.9 613 80.6
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 7.0e-292 1006.9 613 80.4
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 1.6e-291 1005.7 584 82.5
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.6e-291 1005.7 655 77.7
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 3.5e-291 1004.6 601 81.4
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 1.1e-289 999.6 657 76.3
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.5e-289 999.2 579 82.4
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.9e-289 998.8 576 82.1
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 9.5e-289 996.5 573 82.7
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 1.2e-288 996.1 582 82.3
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.6e-288 995.7 657 76.4
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 4.7e-288 994.2 573 82.5
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 3.0e-287 991.5 574 81.9
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 3.0e-287 991.5 573 81.5
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 4.0e-287 991.1 652 75.9
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.0e-287 991.1 628 78.5
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 1.5e-286 989.2 570 83.0
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.0e-286 988.8 595 80.8
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.4e-286 988.0 572 80.8
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 3.4e-286 988.0 584 80.3
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 4.4e-286 987.6 573 81.5
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 5.7e-286 987.3 595 81.0
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 5.7e-286 987.3 665 73.4
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 2.2e-285 985.3 572 80.9
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 2.8e-285 984.9 578 80.8
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 4.9e-285 984.2 615 77.7
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 8.3e-285 983.4 578 80.3
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.4e-284 982.6 577 80.6
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.8e-284 982.2 595 80.7
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 3.2e-284 981.5 573 81.8
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 1.2e-283 979.5 574 80.7
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 1.2e-283 979.5 600 78.8
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.2e-283 979.5 617 77.5
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 1.2e-283 979.5 584 80.3
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 4.5e-283 977.6 567 82.0
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 4.5e-283 977.6 585 80.5
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 1.0e-282 976.5 576 80.2
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 1.3e-282 976.1 585 80.5
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 1.3e-282 976.1 646 74.9
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 1.7e-282 975.7 576 80.4
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 8.6e-282 973.4 582 79.7
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 1.5e-281 972.6 550 83.1
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 3.3e-281 971.5 588 78.6
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 3.3e-281 971.5 579 80.7
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 1.6e-280 969.1 630 74.1
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 6.1e-280 967.2 583 78.9
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 8.0e-280 966.8 580 79.3
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.0e-279 966.5 579 79.6
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 1.8e-279 965.7 630 74.3
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 2.3e-279 965.3 583 78.4
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 2.3e-279 965.3 576 79.9
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 3.1e-279 964.9 582 79.2
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 6.8e-279 963.8 583 78.6
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 8.9e-279 963.4 543 83.4
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 2.6e-278 961.8 586 79.4
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 3.4e-278 961.4 563 80.3
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 4.4e-278 961.1 585 79.3
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 5.8e-278 960.7 591 76.8
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 9.8e-278 959.9 632 73.7
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 3.7e-277 958.0 581 79.0
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 8.3e-277 956.8 581 78.8
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 1.1e-276 956.4 543 83.1
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 2.4e-276 955.3 528 86.0
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 5.4e-276 954.1 575 79.1
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 7.0e-276 953.7 577 79.4
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 1.2e-275 953.0 530 84.7
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 2.0e-275 952.2 575 79.1
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.1e-273 946.4 546 83.7
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 1.9e-273 945.7 692 69.2
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 1.2e-272 943.0 578 77.5
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 3.1e-271 938.3 580 76.4
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 3.7e-269 931.4 583 75.8
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 1.9e-268 929.1 576 76.6
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 1.1e-265 919.8 577 76.4
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 5.6e-265 917.5 574 76.8
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 1.2e-264 916.4 545 79.8
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 2.1e-264 915.6 574 76.7
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 3.1e-263 911.8 581 75.7
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 4.9e-261 904.4 531 79.5
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 3.3e-257 891.7 571 76.4
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 3.8e-253 878.2 580 73.4
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.0e-250 870.2 576 74.0
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.7e-250 869.4 552 74.3
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 4.3e-249 864.8 586 73.2
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.4e-244 849.7 490 82.0
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 6.4e-237 824.3 447 87.9
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 1.1e-236 823.5 447 87.9
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 7.1e-236 820.8 549 73.2
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 1.3e-234 816.6 547 69.7
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.5e-233 813.1 550 73.3
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.7e-232 808.5 438 88.1
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 5.5e-228 794.7 562 66.5
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 3.0e-226 788.9 620 63.1
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 2.3e-210 736.1 517 69.8
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.4e-204 716.8 481 74.4
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.1e-193 680.6 452 72.1
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.3e-184 650.6 538 59.3
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 2.9e-181 639.4 361 83.9
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 5.6e-172 608.6 344 85.8
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.5e-164 583.9 575 56.7
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 5.6e-156 555.4 329 80.2
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 4.7e-147 525.8 563 49.4
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 8.4e-144 515.0 422 63.3
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 9.2e-143 511.5 534 54.3
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 7.8e-142 508.4 280 83.9
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 7.8e-142 508.4 278 86.3
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 3.2e-135 486.5 297 79.1
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.2e-120 437.2 574 43.7
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 4.0e-114 416.4 288 69.1
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 2.6e-97 360.5 643 36.9
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.8e-93 347.8 263 69.2
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 5.1e-93 346.3 184 87.0
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.2e-83 314.3 179 85.5
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 6.3e-83 312.8 188 78.2
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 6.3e-83 312.8 179 84.4
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 8.2e-83 312.4 593 36.6
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 8.5e-80 302.4 167 87.4
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 7.2e-79 299.3 531 35.4
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.0e-77 295.4 585 34.9
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 8.0e-70 269.2 610 34.1
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 7.0e-66 256.1 321 46.7
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.6e-65 255.0 140 85.0
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 2.7e-62 244.2 159 71.1
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 6.1e-62 243.0 596 31.7
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.8e-50 204.9 117 82.1
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 2.7e-49 201.1 120 80.8
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 1.4e-45 188.7 107 83.2
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.0e-44 184.9 100 87.0
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.6e-41 175.3 115 72.2
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 8.6e-40 169.5 155 56.8
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.1e-33 148.3 102 71.6
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 6.2e-30 136.7 77 77.9
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 3.1e-29 134.4 67 88.1
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 6.8e-29 133.3 137 52.6
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 6.8e-29 133.3 65 92.3
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 8.4e-27 126.3 90 68.9
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 3.4e-20 104.4 64 75.0
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 6.9e-13 80.1 72 62.5
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 9.9e-12 76.3 78 57.7
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.2e-11 75.1 54 66.7
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.3e-08 65.9 58 56.9
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 7.4e-07 60.1 38 65.8
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 2.8e-06 58.2 69 47.8


User provided reference genes

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