Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02437 Eucalyptus grandis HOM05D008034 ORTHO05D010051 3.9e-113 411.4 196 100.0
Manes.11G137800 Manihot esculenta HOM05D008034 ORTHO05D010051 1.9e-67 259.6 182 67.0
QL01p035245 Quercus lobata HOM05D008034 ORTHO05D010051 1.2e-66 256.9 184 65.2
FvH4_3g34350 Fragaria vesca HOM05D008034 ORTHO05D010051 1.8e-65 253.1 180 65.6
Prupe.6G089000 Prunus persica HOM05D008034 ORTHO05D010051 5.2e-65 251.5 183 67.2
Ciclev10029356m.g Citrus clementina HOM05D008034 ORTHO05D010051 8.9e-65 250.8 175 68.6
Actinidia37272 Actinidia chinensis HOM05D008034 ORTHO05D010051 1.2e-64 250.4 178 65.7
Actinidia27676 Actinidia chinensis HOM05D008034 ORTHO05D010051 5.8e-64 248.1 178 64.6
GSVIVG01025076001 Vitis vinifera HOM05D008034 ORTHO05D010051 2.9e-63 245.7 179 63.1
TWI75G0515 Tripterygium wilfordii HOM05D008034 ORTHO05D010051 8.3e-63 244.2 181 61.9
Duzib170G0117 Durio zibethinus HOM05D008034 ORTHO05D010051 1.4e-62 243.4 179 62.0
Cpa.g.sc139.12 Carica papaya HOM05D008034 ORTHO05D010051 1.9e-62 243.0 187 61.0
Atru.chr3.3772 Acer truncatum HOM05D008034 ORTHO05D010051 3.2e-62 242.3 172 65.7
Hma1.2p1_0035F.1_g021690 Hydrangea macrophylla HOM05D008034 ORTHO05D010051 5.4e-62 241.5 155 70.3
Thecc.09G333100 Theobroma cacao HOM05D008034 ORTHO05D010051 6.0e-61 238.0 174 63.8
Glyma.18G177500 Glycine max HOM05D008034 ORTHO05D010051 1.3e-60 236.9 168 64.3
Cfa011409 Carpinus fangiana HOM05D008034 ORTHO05D010051 1.7e-60 236.5 181 62.4
Psat3g140960 Pisum sativum HOM05D008034 ORTHO05D010051 1.7e-60 236.5 174 62.6
Phvul.008G100300 Phaseolus vulgaris HOM05D008034 ORTHO05D010051 2.3e-60 236.1 173 64.7
COL.COLO4_18407 Corchorus olitorius HOM05D008034 ORTHO05D010051 8.6e-60 234.2 177 63.3
CAN.G84.9 Capsicum annuum HOM05D008034 ORTHO05D010051 1.5e-59 233.4 174 62.1
CiPaw.13G103300 Carya illinoinensis HOM05D008034 ORTHO05D010051 1.5e-59 233.4 157 68.8
CSS0025126 Camellia sinensis var. sinensis HOM05D008034 ORTHO05D010051 1.9e-59 233.0 154 69.5
Medtr7g060450 Medicago truncatula HOM05D008034 ORTHO05D010051 5.6e-59 231.5 174 62.6
Nitab4.5_0002380g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 5.6e-59 231.5 187 60.4
Nitab4.5_0007786g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 5.6e-59 231.5 189 58.7
ClCG02G020510 Citrullus lanatus HOM05D008034 ORTHO05D010051 7.3e-59 231.1 168 63.7
Solyc11g072765.1 Solanum lycopersicum HOM05D008034 ORTHO05D010051 7.3e-59 231.1 157 63.1
Rhsim13G0089800 Rhododendron simsii HOM05D001089 ORTHO05D000920 3.6e-58 228.8 164 63.4
Gohir.A07G094200 Gossypium hirsutum HOM05D008034 ORTHO05D010051 6.2e-58 228.0 169 62.1
Gohir.D07G098700 Gossypium hirsutum HOM05D008034 ORTHO05D010051 6.2e-58 228.0 169 61.5
Gorai.001G106200 Gossypium raimondii HOM05D008034 ORTHO05D010051 6.2e-58 228.0 169 61.5
RhsimUnG0139800 Rhododendron simsii HOM05D001089 ORTHO05D000920 6.2e-58 228.0 164 63.4
arahy.Tifrunner.gnm1.ann1.JRZ5DE Arachis hypogaea HOM05D008034 ORTHO05D010051 8.1e-58 227.6 161 65.8
Haze_23982 Corylus avellana HOM05D008034 ORTHO05D010051 8.1e-58 227.6 152 67.8
arahy.Tifrunner.gnm1.ann1.YB7TH1 Arachis hypogaea HOM05D008034 ORTHO05D010051 1.4e-57 226.9 161 65.8
CsaV3_6G021950 Cucumis sativus L. HOM05D008034 ORTHO05D010051 1.8e-57 226.5 168 61.9
PGR102G1024 Punica granatum HOM05D008034 ORTHO05D010051 3.1e-57 225.7 192 57.3
HanXRQChr08g0230621 Helianthus annuus HOM05D008034 ORTHO05D010051 6.8e-57 224.6 163 63.2
Lsat_1_v5_gn_9_21900 Lactuca sativa HOM05D008034 ORTHO05D010051 6.8e-57 224.6 152 64.5
Lalb_Chr03g0035081 Lupinus albus HOM05D008034 ORTHO05D010051 6.8e-57 224.6 169 62.1
FAN11G2200 Fragaria x ananassa HOM05D008034 ORTHO05D010051 9.9e-56 220.7 157 65.6
MELO3C025715.2 Cucumis melo HOM05D008034 ORTHO05D010051 2.2e-55 219.5 145 66.9
Lalb_Chr03g0042121 Lupinus albus HOM05D008034 ORTHO05D010051 2.2e-55 219.5 169 60.4
TAR623G1523 Trochodendron aralioides HOM05D008034 ORTHO05D010051 2.9e-55 219.2 151 64.2
Aqoxy4G03114 Aquilegia oxysepala HOM05D008034 ORTHO05D010051 4.9e-55 218.4 153 64.7
Glyma.08G359000 Glycine max HOM05D008034 ORTHO05D010051 3.2e-54 215.7 168 61.3
ECA247G3899 Erigeron canadensis HOM05D008034 ORTHO05D010051 5.4e-54 214.9 152 61.8
Sed0016706 Sechium edule HOM05D008034 ORTHO05D010051 1.6e-53 213.4 175 57.1
PSO724G0148 Papaver somniferum HOM05D008034 ORTHO05D010051 3.5e-53 212.2 174 58.6
PSO729G0256 Papaver somniferum HOM05D008034 ORTHO05D010051 4.6e-53 211.8 174 59.2
Nn2g10576 Nelumbo nucifera HOM05D008034 ORTHO05D010051 1.7e-52 209.9 167 58.7
CANSAT54G0614 Cannabis sativa HOM05D008034 ORTHO05D010051 3.1e-49 199.1 176 52.3
VMungo1383G3175 Vigna mungo HOM05D008034 ORTHO05D010051 1.3e-47 193.7 189 51.9
Ah.15g096410 Amaranthus hybridus HOM05D008034 ORTHO05D010051 6.0e-45 184.9 150 54.7
AUR62009660 Chenopodium quinoa HOM05D008034 ORTHO05D010051 6.0e-45 184.9 152 54.6
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 7.8e-45 184.5 151 56.3
ATR0594G086 Amborella trichopoda HOM05D008034 ORTHO05D010051 3.0e-44 182.6 153 54.9
MBI14_g16339_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D010051 8.7e-44 181.0 162 53.1
PSO416G0003 Papaver somniferum HOM05D008034 ORTHO05D010051 5.3e-41 171.8 154 55.8
Dinv06338 Davidia involucrata HOM05D008034 ORTHO05D010051 9.0e-41 171.0 107 68.2
TPR.G23264 Trifolium pratense HOM05D008034 ORTHO05D010051 1.7e-39 166.8 143 55.2
Sc21g0005330 Simmondsia chinensis HOM05D008034 ORTHO05D010051 8.7e-36 154.5 115 58.3
Sopen11g030440 Solanum pennellii HOM05D008034 ORTHO05D010051 3.1e-33 146.0 78 75.6
AUR62001862 Chenopodium quinoa HOM05D008034 ORTHO05D010051 4.0e-33 145.6 150 46.7
SEGI_26238 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 6.2e-26 121.7 142 44.4
SEGI_39089 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 6.2e-26 121.7 142 44.4
ATR0594G007 Amborella trichopoda HOM05D001120 ORTHO05D010051 1.4e-25 120.6 152 44.1
SEGI_07630 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 5.8e-24 115.2 169 35.5
MD07G1183300 Malus domestica HOM05D008034 ORTHO05D010051 7.6e-24 114.8 146 41.1
Potri.010G214400 Populus trichocarpa HOM05D008034 ORTHO05D010051 7.6e-24 114.8 155 39.4
RcHm_v2.0_Chr1g0364691 Rosa chinensis HOM05D008034 ORTHO05D010051 1.0e-23 114.4 142 44.4
FAN01G1155 Fragaria x ananassa HOM05D001787 ORTHO05D007379 2.2e-23 113.2 143 42.7
FAN01G1685 Fragaria x ananassa HOM05D001787 ORTHO05D007379 2.2e-23 113.2 143 42.7
FAN06G2736 Fragaria x ananassa HOM05D001787 ORTHO05D007379 8.4e-23 111.3 143 42.7
FvH4_7g20661 Fragaria vesca HOM05D008034 ORTHO05D010051 1.4e-22 110.5 143 42.7
FAN03G1672 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.4e-22 110.5 143 42.7
FAN06G3907 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.4e-22 110.5 143 42.7
FAN10G0756 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.4e-22 110.5 142 43.0
Cpa.g.sc10.57 Carica papaya HOM05D001787 ORTHO05D007379 4.2e-22 109.0 158 37.3
Prupe.2G222000 Prunus persica HOM05D001120 ORTHO05D010051 9.3e-22 107.8 140 43.6
Nn2g10579 Nelumbo nucifera HOM05D001120 ORTHO05D010051 2.1e-21 106.7 138 42.8
TAR369G0105 Trochodendron aralioides HOM05D008034 ORTHO05D010051 4.6e-21 105.5 145 41.4
Manes.07G106000 Manihot esculenta HOM05D008034 ORTHO05D002447 7.9e-21 104.8 145 40.7
MBI14_g46136_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002447 2.8e-18 96.3 153 39.2
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.6e-16 89.7 151 31.8
Hma1.2p1_0018F.1_g012390 Hydrangea macrophylla HOM05D001120 ORTHO05D002447 3.4e-16 89.4 141 30.5
Cpa.g.sc75.26 Carica papaya HOM05D001120 ORTHO05D002447 4.5e-16 89.0 139 30.9
Haze_16964 Corylus avellana HOM05D008034 ORTHO05D010051 5.9e-16 88.6 146 34.9
Actinidia21986 Actinidia chinensis HOM05D001120 ORTHO05D002447 7.7e-16 88.2 176 29.0
Sp4g23740 Schrenkiella parvula HOM05D001120 ORTHO05D002447 7.7e-16 88.2 138 31.9
SEGI_17058 Sequoiadendron giganteum HOM05D001120 ORTHO05D002447 1.7e-15 87.0 156 30.8
AL4G39560 Arabidopsis lyrata HOM05D001120 ORTHO05D002447 2.2e-15 86.7 138 30.4
AT2G41475 Arabidopsis thaliana HOM05D001120 ORTHO05D002447 2.9e-15 86.3 138 30.4
Aa31LG1G23490 Aethionema arabicum HOM05D001120 ORTHO05D002447 3.8e-15 85.9 133 31.6
Aqoxy7G03703 Aquilegia oxysepala HOM05D001120 ORTHO05D002447 5.0e-15 85.5 136 31.6
Thhalv10017295m.g Eutrema salsugineum HOM05D001120 ORTHO05D002447 6.5e-15 85.1 138 29.7
Sopen01g046430 Solanum pennellii HOM05D001120 ORTHO05D002447 6.5e-15 85.1 136 32.4
CANSAT56G0855 Cannabis sativa HOM05D001120 ORTHO05D002447 8.5e-15 84.7 139 29.5
Carub.0004s2377 Capsella rubella HOM05D001120 ORTHO05D002447 8.5e-15 84.7 133 30.8
CARHR136590 Cardamine hirsuta HOM05D001120 ORTHO05D002447 8.5e-15 84.7 138 29.7
Sopen01g046420 Solanum pennellii HOM05D001120 ORTHO05D002447 8.5e-15 84.7 136 30.9
CAN.G798.15 Capsicum annuum HOM05D001120 ORTHO05D002447 1.1e-14 84.3 146 31.5
Psat6g203680 Pisum sativum HOM05D001120 ORTHO05D002447 1.1e-14 84.3 151 27.2
PGSC0003DMG400023798 Solanum tuberosum HOM05D001120 ORTHO05D002447 1.1e-14 84.3 136 30.1
Manes.14G132300 Manihot esculenta HOM05D001120 ORTHO05D002447 1.4e-14 84.0 139 29.5
Solyc01g104020.2 Solanum lycopersicum HOM05D001120 ORTHO05D002447 1.4e-14 84.0 136 30.1
Duzib192G0269 Durio zibethinus HOM05D001120 ORTHO05D002447 2.5e-14 83.2 140 30.0
PGSC0003DMG400023797 Solanum tuberosum HOM05D001120 ORTHO05D002447 2.5e-14 83.2 143 30.1
Phvul.007G063600 Phaseolus vulgaris HOM05D001120 ORTHO05D002447 3.2e-14 82.8 138 30.4
PGR031G1653 Punica granatum HOM05D001120 ORTHO05D002447 3.2e-14 82.8 140 28.6
CAN.G798.16 Capsicum annuum HOM05D001120 ORTHO05D002447 4.2e-14 82.4 136 31.6
MBI04_g38656_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002447 4.2e-14 82.4 171 28.1
Gohir.D05G126700 Gossypium hirsutum HOM05D001120 ORTHO05D002447 5.5e-14 82.0 145 28.3
Gorai.009G130700 Gossypium raimondii HOM05D001120 ORTHO05D002447 5.5e-14 82.0 145 28.3
Gohir.A05G125700 Gossypium hirsutum HOM05D001120 ORTHO05D002447 7.2e-14 81.6 143 28.7
Peaxi162Scf00148g00114 Petunia axillaris HOM05D001120 ORTHO05D002447 9.4e-14 81.3 135 32.6
Os05g0171200 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002447 2.1e-13 80.1 141 37.6
Sed0010780 Sechium edule HOM05D001120 ORTHO05D002447 2.1e-13 80.1 139 28.1
Eucgr.J03061 Eucalyptus grandis HOM05D001120 ORTHO05D002447 2.7e-13 79.7 139 28.8
Sabra12G0098500 Salix brachista HOM05D001120 ORTHO05D002447 2.7e-13 79.7 139 28.8
MD00G1023000 Malus domestica HOM05D001120 ORTHO05D002447 3.6e-13 79.3 139 25.2
Thecc.06G021100 Theobroma cacao HOM05D001120 ORTHO05D002447 4.6e-13 79.0 140 29.3
Ciclev10026660m.g Citrus clementina HOM05D001120 ORTHO05D002447 1.0e-12 77.8 143 27.3
unitig_22.g6612 Utricularia gibba HOM05D001120 ORTHO05D002447 1.8e-12 77.0 170 25.9
Os01g0172800 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002447 3.0e-12 76.3 135 34.1
SEGI_18751 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 3.0e-12 76.3 141 29.8
Aqoxy7G02184 Aquilegia oxysepala HOM05D001120 ORTHO05D002447 3.9e-12 75.9 141 27.0
FAN02G1869 Fragaria x ananassa HOM05D001120 ORTHO05D002447 5.1e-12 75.5 139 25.2
Manes.04G114400 Manihot esculenta HOM05D001120 ORTHO05D002447 5.1e-12 75.5 139 27.3
MSTRG.22732 Avicennia marina HOM05D001120 ORTHO05D002447 6.7e-12 75.1 142 27.5
FvH4_6g29960 Fragaria vesca HOM05D001120 ORTHO05D002447 6.7e-12 75.1 139 25.2
FAN09G4531 Fragaria x ananassa HOM05D001120 ORTHO05D002447 8.8e-12 74.7 139 25.2
A10p28950 Brassica napus HOM05D001120 ORTHO05D002447 1.1e-11 74.3 167 26.9
Lj2g0018359 Lotus japonicus HOM05D001120 ORTHO05D002447 1.1e-11 74.3 145 27.6
Ciclev10005897m.g Citrus clementina HOM05D001120 ORTHO05D002447 1.5e-11 73.9 144 29.2
ECA232G3997 Erigeron canadensis HOM05D001120 ORTHO05D002447 1.5e-11 73.9 144 25.7
RcHm_v2.0_Chr2g0135961 Rosa chinensis HOM05D001120 ORTHO05D002447 1.5e-11 73.9 139 25.9
Glyma.09G151900 Glycine max HOM05D001120 ORTHO05D002447 3.3e-11 72.8 148 25.7
VMungo0464G0837 Vigna mungo HOM05D001120 ORTHO05D002447 3.3e-11 72.8 142 27.5
MELO3C017889.2 Cucumis melo HOM05D001120 ORTHO05D002447 4.3e-11 72.4 139 27.3
CsaV3_4G001510 Cucumis sativus L. HOM05D001120 ORTHO05D002447 4.3e-11 72.4 139 26.6
PSO170G1098 Papaver somniferum HOM05D001120 ORTHO05D002447 4.3e-11 72.4 135 27.4
ClCG07G012680 Citrullus lanatus HOM05D001120 ORTHO05D002447 5.7e-11 72.0 139 26.6
TPR.G37175 Trifolium pratense HOM05D001120 ORTHO05D002447 5.7e-11 72.0 135 29.6
PSO455G0274 Papaver somniferum HOM05D001120 ORTHO05D002447 7.4e-11 71.6 136 27.2
Sp6g35710 Schrenkiella parvula HOM05D001120 ORTHO05D002447 1.7e-10 70.5 166 24.7
arahy.Tifrunner.gnm1.ann1.LIRE4J Arachis hypogaea HOM05D001120 ORTHO05D002447 2.2e-10 70.1 146 26.0
arahy.Tifrunner.gnm1.ann1.LMQR93 Arachis hypogaea HOM05D001120 ORTHO05D002447 2.2e-10 70.1 146 26.0
Lalb_Chr03g0033011 Lupinus albus HOM05D001120 ORTHO05D002447 2.2e-10 70.1 147 25.9
Psat1g115720 Pisum sativum HOM05D001120 ORTHO05D002447 2.2e-10 70.1 143 28.0
Glyma.16G202000 Glycine max HOM05D001120 ORTHO05D002447 2.8e-10 69.7 136 27.2
Medtr0050s0240 Medicago truncatula HOM05D001120 ORTHO05D002447 3.7e-10 69.3 143 27.3
BraA10t44942Z Brassica rapa HOM05D001120 ORTHO05D002447 4.8e-10 68.9 139 27.3
Glyma.16G202500 Glycine max HOM05D001120 ORTHO05D002447 4.8e-10 68.9 136 27.2
Lalb_Chr03g0033001 Lupinus albus HOM05D001120 ORTHO05D002447 4.8e-10 68.9 147 26.5
Lalb_Chr22g0350891 Lupinus albus HOM05D001120 ORTHO05D002447 6.3e-10 68.6 140 27.1
BcaC06g32466 Brassica carinata HOM05D001120 ORTHO05D002447 8.2e-10 68.2 139 26.6
Psat5g300960 Pisum sativum HOM05D001120 ORTHO05D002447 8.2e-10 68.2 145 27.6
MBI14_g16338_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D002447 1.1e-09 67.8 145 35.2
CAN.G407.95 Capsicum annuum HOM05D001120 ORTHO05D002447 1.4e-09 67.4 145 25.5
CsaV3_3G016450 Cucumis sativus L. HOM05D001120 ORTHO05D002447 1.8e-09 67.0 144 25.0
arahy.Tifrunner.gnm1.ann1.1FS32P Arachis hypogaea HOM05D001120 ORTHO05D002447 2.4e-09 66.6 142 25.4
arahy.Tifrunner.gnm1.ann1.3J2MYH Arachis hypogaea HOM05D001120 ORTHO05D002447 2.4e-09 66.6 142 25.4
CARHR205960 Cardamine hirsuta HOM05D001120 ORTHO05D002447 4.1e-09 65.9 142 26.1
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 4.1e-09 65.9 143 26.6
C09p69300 Brassica napus HOM05D001120 ORTHO05D002447 5.3e-09 65.5 168 23.8
BolC9t59674H Brassica oleracea HOM05D001120 ORTHO05D002447 5.3e-09 65.5 168 23.8
Medtr2g103303 Medicago truncatula HOM05D001120 ORTHO05D002447 1.2e-08 64.3 144 26.4
Solyc03g116590.3 Solanum lycopersicum HOM05D001120 ORTHO05D002447 2.0e-08 63.5 145 24.1
Sopen03g035500 Solanum pennellii HOM05D001120 ORTHO05D002447 2.0e-08 63.5 145 24.1
Carub.0006s0612 Capsella rubella HOM05D001120 ORTHO05D002447 2.6e-08 63.2 142 23.2
TAR645G0001 Trochodendron aralioides HOM05D001120 ORTHO05D002447 2.6e-08 63.2 129 26.4
Lalb_Chr19g0131251 Lupinus albus HOM05D001120 ORTHO05D002447 3.4e-08 62.8 147 25.2
BcaC06g32465 Brassica carinata HOM05D001120 ORTHO05D002447 5.9e-08 62.0 139 25.2
SEGI_12405 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 7.7e-08 61.6 140 25.7
AL6G17410 Arabidopsis lyrata HOM05D001120 ORTHO05D002447 8.5e-07 58.2 143 23.8
AT5G07190 Arabidopsis thaliana HOM05D001120 ORTHO05D002447 1.1e-06 57.8 143 23.8
SEGI_22870 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 3.2e-06 56.2 139 25.2


User provided reference genes

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