Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 3286.5 1729 100.0
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2445.6 1875 69.9
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2438.7 1815 70.9
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2434.8 1842 70.6
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2434.1 1853 70.2
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2419.8 1845 70.4
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2419.8 1826 70.4
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2417.9 1835 71.7
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2399.0 1819 70.4
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2378.6 1829 70.3
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2374.4 1833 70.2
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2369.3 1841 68.9
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2365.9 1832 69.8
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2364.3 1817 69.9
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2362.0 1827 70.1
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2359.3 1831 69.3
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2357.4 1816 70.0
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2349.7 1831 69.3
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2347.0 1832 67.7
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2345.1 1758 71.4
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2341.6 1816 68.9
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2338.9 1863 68.2
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2323.9 1805 68.6
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2320.8 1824 68.1
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2320.0 1829 68.4
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2313.5 1814 68.8
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2311.6 1810 69.0
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2308.9 1814 68.6
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2303.1 1838 67.6
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2301.2 1818 67.5
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2296.5 1831 67.8
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2286.9 1842 67.5
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2281.9 1832 66.6
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2279.2 1835 68.1
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2279.2 1834 67.3
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2278.8 1822 67.7
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2276.1 1831 66.4
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2273.8 1832 66.3
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2268.4 1831 66.3
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2266.5 1818 67.0
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2263.0 1841 66.9
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2261.9 1842 67.3
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2248.8 1826 66.3
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2237.6 1888 65.1
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2237.2 1822 66.4
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2233.4 1830 64.5
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2228.8 1844 65.7
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2228.0 1821 65.2
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2225.3 1900 63.9
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2224.9 1816 66.1
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2217.6 1804 65.5
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2213.7 1834 64.8
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2200.6 1785 66.9
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2196.0 1835 65.2
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2187.9 1809 65.6
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2185.6 1843 64.5
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2185.6 1843 64.5
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2184.8 1821 66.0
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2182.1 1832 64.6
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2176.0 1839 64.4
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2158.3 1830 65.7
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2155.9 1831 63.9
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2152.1 1824 65.0
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2148.2 1823 64.4
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2134.8 1800 64.7
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2133.6 1846 63.0
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2118.2 1781 64.7
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2115.9 1831 62.9
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2115.1 1823 63.3
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2103.9 1815 63.4
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2101.2 1818 62.8
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2080.4 1796 64.0
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2077.8 1804 63.5
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2070.8 1785 64.1
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2063.5 1775 62.9
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2062.3 1735 63.7
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2054.6 1765 63.7
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2047.3 1797 63.0
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2045.4 1798 62.8
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2043.9 1751 64.6
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2039.6 1768 63.6
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2037.3 1796 62.2
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2024.2 1741 64.0
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2011.1 1800 62.6
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1971.1 1747 63.3
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1956.0 1727 63.5
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1948.7 1737 63.4
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1948.3 1737 63.4
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1942.2 1748 62.7
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1929.1 1819 60.2
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1911.0 1754 61.2
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1895.9 1810 58.2
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1887.1 1872 57.0
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1867.8 1764 58.8
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1733.8 1769 55.0
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1705.3 1762 53.9
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1659.0 1366 65.4
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1635.9 1407 64.5
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1583.9 1632 55.3
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1561.2 1336 63.2
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1558.9 1327 63.5
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1541.6 1552 57.7
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1535.8 1796 50.7
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1504.2 1212 65.8
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1456.8 1707 52.7
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1431.8 1367 59.3
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1407.1 1215 63.2
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1350.5 1178 61.8
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1318.9 1984 43.4
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1264.6 1117 63.2
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1233.4 1783 43.9
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1214.5 1004 64.9
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1183.7 1923 41.1
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1160.6 1361 51.4
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1158.3 1963 40.3
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1156.4 1141 57.4
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1146.0 1916 40.4
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 3.0e-273 946.4 864 60.4
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 1.3e-247 861.3 1399 40.9
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.1e-222 778.5 601 66.1
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 1.3e-215 755.0 1285 41.4
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 4.1e-214 750.0 525 74.7
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 3.4e-192 677.2 475 73.9
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 3.4e-184 650.6 460 73.0
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 2.2e-175 621.3 487 69.6
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 1.1e-174 619.0 557 61.2
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.5e-168 598.6 536 60.6
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 4.2e-166 590.5 359 81.9
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 4.3e-163 580.5 624 52.4
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 2.0e-160 571.6 362 82.0
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.2e-158 564.3 425 67.3
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 1.3e-156 558.9 361 76.2
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 1.6e-149 535.4 318 86.8
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 4.4e-147 527.3 439 64.5
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.1e-134 486.1 369 72.1
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 1.1e-129 469.5 323 71.2
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 2.3e-119 435.3 259 83.4
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 1.5e-107 396.0 247 88.3
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 2.1e-88 332.4 393 49.4
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 1.5e-75 289.7 423 45.6
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 1.9e-73 282.7 301 54.5
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 1.9e-73 282.7 300 54.7
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.5e-70 273.1 306 53.6
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 9.0e-52 210.7 122 87.7
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.6e-48 199.9 131 71.8
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 3.0e-23 115.9 91 65.9
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 6.7e-23 114.8 69 89.9
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 7.0e-20 104.8 70 78.6
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 1.6e-19 103.6 656 21.6
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 1.7e-18 100.1 69 75.4
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 8.0e-16 91.3 66 69.7
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 1.2e-14 87.4 70 62.9
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 3.4e-14 85.9 70 61.4
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 5.7e-14 85.1 204 28.9
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.3e-13 84.0 69 63.8
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.3e-13 81.3 39 87.2
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 6.8e-07 61.6 198 29.8
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 1.5e-06 60.5 37 78.4


User provided reference genes

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