Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.6e-73 279.3 137 100.0
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.3e-66 254.6 137 91.2
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.5e-60 235.0 137 84.7
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.8e-59 232.6 137 83.2
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.8e-59 232.6 137 82.5
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 3.0e-59 231.9 137 82.5
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 5.1e-59 231.1 137 81.0
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.9e-58 229.2 139 82.0
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.9e-58 229.2 139 82.0
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.9e-58 229.2 137 81.8
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 3.3e-58 228.4 138 81.9
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 7.4e-58 227.3 137 81.0
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.3e-57 226.5 137 80.3
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.8e-57 224.6 135 79.3
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 8.2e-57 223.8 137 78.8
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.1e-56 223.4 138 79.7
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.1e-56 223.4 137 78.1
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.1e-56 221.9 138 79.0
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 4.0e-56 221.5 138 79.0
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 4.0e-56 221.5 138 79.7
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 4.0e-56 221.5 137 76.6
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 5.3e-56 221.1 137 78.8
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 5.3e-56 221.1 137 78.8
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 5.3e-56 221.1 137 78.1
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 6.9e-56 220.7 137 78.1
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 6.9e-56 220.7 137 78.1
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 9.0e-56 220.3 151 73.5
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 9.0e-56 220.3 137 77.4
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 9.0e-56 220.3 142 76.1
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 9.0e-56 220.3 138 78.3
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 9.0e-56 220.3 140 77.9
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.2e-55 219.9 143 76.2
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.2e-55 219.9 138 78.3
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.2e-55 219.9 137 77.4
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 1.5e-55 219.5 145 75.2
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.5e-55 219.5 145 75.2
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.5e-55 219.5 138 79.0
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.0e-55 219.2 138 78.3
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 2.0e-55 219.2 137 76.6
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.0e-55 219.2 137 78.1
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 2.6e-55 218.8 145 74.5
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.4e-55 218.4 134 79.9
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.4e-55 218.4 134 79.9
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 3.4e-55 218.4 138 78.3
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 4.5e-55 218.0 145 73.8
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 4.5e-55 218.0 129 82.2
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 4.5e-55 218.0 137 78.1
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 4.5e-55 218.0 137 76.6
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 5.8e-55 217.6 145 73.8
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 7.6e-55 217.2 145 73.8
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.6e-55 217.2 128 82.0
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.0e-54 216.9 137 77.4
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.0e-54 216.9 137 76.6
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.3e-54 216.5 137 75.2
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.7e-54 216.1 140 77.1
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.7e-54 216.1 138 78.3
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 4.9e-54 214.5 133 80.5
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 4.9e-54 214.5 138 76.8
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.9e-54 214.5 138 76.8
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.9e-54 214.5 138 76.8
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.9e-54 214.5 138 76.8
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.9e-54 214.5 138 76.8
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 4.9e-54 214.5 133 77.4
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 6.5e-54 214.2 129 80.6
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 8.4e-54 213.8 138 76.1
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 8.4e-54 213.8 134 78.4
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.4e-53 213.0 137 75.2
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 2.5e-53 212.2 132 78.0
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 2.5e-53 212.2 137 75.2
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 5.5e-53 211.1 137 76.6
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 9.3e-53 210.3 133 75.9
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 9.3e-53 210.3 137 75.9
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 1.2e-52 209.9 145 72.4
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.2e-52 209.9 145 72.4
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 1.2e-52 209.9 145 72.4
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.2e-52 209.9 145 72.4
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.2e-52 209.9 145 72.4
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.6e-52 209.5 139 74.8
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.6e-52 209.5 145 72.4
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.1e-52 209.1 133 77.4
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.1e-52 209.1 134 77.6
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 2.1e-52 209.1 132 78.8
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.1e-52 209.1 137 74.5
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 2.7e-52 208.8 126 78.6
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 2.7e-52 208.8 128 78.1
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 2.7e-52 208.8 137 75.9
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 4.6e-52 208.0 137 77.4
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 4.6e-52 208.0 144 72.2
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 6.0e-52 207.6 137 75.2
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 7.9e-52 207.2 127 78.7
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 7.9e-52 207.2 129 77.5
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.0e-51 206.8 134 74.6
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 1.0e-51 206.8 126 78.6
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 1.0e-51 206.8 137 73.7
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.0e-51 206.8 134 75.4
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.8e-51 206.1 127 78.0
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 2.3e-51 205.7 144 72.2
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 3.9e-51 204.9 136 75.7
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 3.9e-51 204.9 136 75.7
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 2.5e-50 202.2 134 74.6
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 5.7e-50 201.1 123 78.9
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 9.7e-50 200.3 134 72.4
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.3e-49 199.9 130 73.8
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 1.6e-49 199.5 129 75.2
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 2.2e-49 199.1 133 73.7
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 6.3e-49 197.6 127 73.2
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.1e-48 196.8 131 72.5
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.1e-48 196.8 131 72.5
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.4e-48 196.4 131 74.0
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.8e-48 196.1 134 70.1
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 2.4e-48 195.7 119 79.0
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.5e-47 193.0 126 72.2
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 2.0e-47 192.6 123 76.4
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 4.5e-47 191.4 127 74.8
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 5.9e-47 191.0 123 75.6
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.3e-46 189.9 137 68.6
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 8.5e-46 187.2 124 75.0
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.5e-45 184.5 126 71.4
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.0e-43 180.3 130 67.7
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.4e-43 179.9 115 75.7
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.8e-33 144.8 83 88.0
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.1e-29 133.7 128 53.1
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.6e-28 129.8 67 91.0
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 6.7e-27 124.4 74 78.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.5e-23 112.1 69 76.8
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.5e-23 112.1 69 76.8
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 5.9e-23 111.3 67 77.6
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 2.2e-22 109.4 85 67.1
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.9e-22 109.0 68 76.5
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.5e-21 106.7 70 74.3
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 5.5e-21 104.8 85 65.9
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.8e-19 99.8 110 51.8
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.8e-19 99.8 110 51.8
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.8e-19 99.8 63 73.0
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 6.3e-17 91.3 60 73.3
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.9e-15 84.7 66 66.7
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 5.0e-14 81.6 66 65.2
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 1.9e-13 79.7 64 59.4
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 1.9e-13 79.7 64 59.4
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.2e-12 77.0 133 37.6
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.7e-09 66.6 62 58.1
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.8e-08 63.2 51 58.8
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 8.6e-06 54.3 81 39.5


User provided reference genes

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