Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 9.1e-142 506.9 258 100.0
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.7e-132 476.1 279 90.3
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 6.6e-84 314.7 315 60.0
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.1e-78 297.4 284 58.5
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 4.2e-78 295.4 285 60.4
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 9.3e-78 294.3 285 59.3
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 2.1e-77 293.1 287 60.3
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 2.1e-77 293.1 286 59.4
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.7e-77 292.7 285 58.2
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.7e-77 292.7 285 58.6
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.7e-77 292.7 285 58.6
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 3.5e-77 292.4 295 58.3
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 3.5e-77 292.4 285 59.6
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 6.0e-77 291.6 286 58.4
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 6.0e-77 291.6 285 59.6
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 7.8e-77 291.2 285 60.0
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 7.8e-77 291.2 286 57.7
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.0e-76 290.8 285 58.9
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 1.3e-76 290.4 285 59.3
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 1.7e-76 290.0 286 58.7
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.7e-76 290.0 285 58.9
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 2.3e-76 289.7 288 59.0
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.3e-76 289.7 285 58.6
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.3e-76 289.7 286 58.0
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 3.0e-76 289.3 285 58.9
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 3.9e-76 288.9 285 58.2
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 3.9e-76 288.9 286 58.0
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 6.6e-76 288.1 286 58.0
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 6.6e-76 288.1 285 58.2
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.1e-75 287.3 286 58.0
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.1e-75 287.3 285 58.9
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 1.9e-75 286.6 286 57.7
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 2.5e-75 286.2 285 58.6
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 3.3e-75 285.8 286 57.7
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 4.3e-75 285.4 285 57.2
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 4.3e-75 285.4 288 56.9
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 5.6e-75 285.0 288 57.6
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 7.3e-75 284.6 285 58.2
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 7.3e-75 284.6 285 58.6
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 9.6e-75 284.3 286 57.3
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 1.3e-74 283.9 285 58.2
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.6e-74 283.5 285 58.2
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 2.1e-74 283.1 285 58.2
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 2.1e-74 283.1 286 57.7
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 2.1e-74 283.1 286 57.7
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 2.1e-74 283.1 285 57.9
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 2.1e-74 283.1 286 56.6
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 2.1e-74 283.1 285 57.9
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 2.1e-74 283.1 288 58.0
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 2.1e-74 283.1 288 57.3
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 2.8e-74 282.7 285 57.9
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 2.8e-74 282.7 285 57.9
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 2.8e-74 282.7 285 57.9
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.8e-74 282.7 286 57.0
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.8e-74 282.7 286 57.0
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 3.6e-74 282.3 285 57.9
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 3.6e-74 282.3 285 57.9
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 3.6e-74 282.3 285 57.9
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 3.6e-74 282.3 285 57.5
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 4.8e-74 282.0 285 57.9
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 4.8e-74 282.0 291 56.4
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 6.2e-74 281.6 286 56.6
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 8.1e-74 281.2 285 57.5
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.1e-73 280.8 287 56.1
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.4e-73 280.4 284 57.4
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.8e-73 280.0 285 57.9
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.8e-73 280.0 285 56.5
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.4e-73 279.6 285 57.2
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 2.4e-73 279.6 287 55.7
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 4.0e-73 278.9 285 56.8
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 4.0e-73 278.9 285 57.2
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 5.3e-73 278.5 285 57.2
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 5.3e-73 278.5 286 56.6
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 5.3e-73 278.5 288 57.3
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 6.9e-73 278.1 286 56.6
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 6.9e-73 278.1 286 56.3
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.9e-73 278.1 286 56.3
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.9e-73 278.1 286 56.3
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.0e-73 277.7 286 56.3
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 9.0e-73 277.7 285 56.5
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 2.6e-72 276.2 285 56.8
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 2.6e-72 276.2 286 56.3
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 3.4e-72 275.8 286 56.3
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 4.4e-72 275.4 286 57.0
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 4.4e-72 275.4 286 56.3
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 4.4e-72 275.4 285 57.2
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 4.4e-72 275.4 285 56.8
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 5.8e-72 275.0 285 56.1
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.9e-72 274.2 286 55.6
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.3e-71 273.9 316 52.8
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.3e-71 273.9 321 51.7
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.3e-71 273.9 285 55.8
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.2e-71 273.1 285 56.1
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.4e-70 270.4 303 52.8
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 1.4e-70 270.4 286 55.2
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.9e-70 270.0 285 56.1
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 1.9e-70 270.0 285 56.1
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 4.2e-70 268.9 286 53.8
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 9.3e-70 267.7 289 54.3
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.6e-69 266.9 312 51.3
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 4.6e-69 265.4 285 54.7
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 6.0e-69 265.0 278 56.5
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 7.9e-69 264.6 272 57.0
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.0e-68 264.2 274 56.9
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 3.0e-68 262.7 305 51.8
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.1e-67 260.8 290 54.1
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 4.3e-67 258.8 285 53.7
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.3e-67 258.8 285 54.0
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 4.3e-67 258.8 285 52.6
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.4e-65 253.1 348 46.0
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.4e-65 253.1 272 55.5
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 2.0e-64 250.0 277 53.4
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 3.8e-63 245.7 285 52.3
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 6.4e-63 245.0 285 51.2
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 2.4e-62 243.0 327 45.9
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.6e-61 240.4 338 45.9
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.1e-61 240.0 285 49.1
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.0e-60 236.1 285 47.7
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 5.1e-60 235.3 278 51.4
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 3.3e-59 232.6 287 49.8
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 9.6e-59 231.1 285 47.7
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 2.1e-58 229.9 265 53.6
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.4e-57 227.3 275 50.9
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.1e-57 226.1 316 45.3
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 3.1e-57 226.1 285 46.3
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 9.0e-57 224.6 288 47.2
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 9.0e-57 224.6 288 47.2
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 4.5e-56 222.2 220 58.6
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 7.6e-56 221.5 287 45.3
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 7.6e-56 221.5 286 46.5
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 1.0e-55 221.1 256 53.1
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.1e-54 217.6 287 45.6
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 4.6e-53 212.2 270 47.0
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.8e-50 203.0 211 55.5
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.1e-49 201.1 286 41.6
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.0e-49 198.0 246 49.6
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.8e-47 192.6 273 46.5
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.6e-45 187.2 180 62.8
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.0e-44 184.5 312 39.1
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.9e-43 180.3 182 57.7
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 8.2e-42 174.9 180 56.1
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 2.4e-41 173.3 179 58.7
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.9e-40 168.7 261 42.5
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.0e-39 167.9 182 53.8
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.9e-38 163.7 288 38.9
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 7.9e-37 158.3 143 59.4
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 6.9e-33 145.2 143 54.5
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 1.5e-32 144.1 233 43.8
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.9e-28 129.4 190 42.1
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.1e-25 119.4 139 58.3
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.0e-23 112.5 103 54.4
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.1e-22 111.3 102 54.9
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.5e-22 110.2 151 44.4
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.2e-21 107.8 287 32.1
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.8e-20 104.0 102 52.9
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 5.7e-19 99.0 263 29.3
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 6.3e-18 95.5 86 57.0
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 2.4e-17 93.6 66 63.6
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 4.5e-16 89.4 58 67.2
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 5.9e-16 89.0 88 55.7
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.1e-14 84.7 111 48.6
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.9e-14 84.0 57 66.7
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.6e-13 79.7 64 70.3
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 3.0e-12 76.6 51 70.6
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.8e-12 75.5 66 50.0
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 7.5e-11 72.0 50 66.0
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.7e-10 70.9 187 32.1
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.2e-08 64.7 38 84.2
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-08 64.7 51 62.7
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 4.5e-08 62.8 56 64.3


User provided reference genes

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