Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 5.8e-178 627.5 324 100.0
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.1e-131 473.8 279 90.3
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 9.4e-120 434.1 365 67.4
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 3.1e-107 392.5 362 60.8
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 2.0e-106 389.8 361 61.8
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.3e-105 387.1 359 61.3
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 5.0e-105 385.2 359 59.9
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.1e-104 384.0 356 61.0
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.5e-104 382.9 358 60.1
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.5e-104 382.9 357 59.1
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 2.5e-104 382.9 354 61.3
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 5.5e-104 381.7 365 60.3
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 7.2e-104 381.3 355 60.0
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 9.4e-104 380.9 359 59.6
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.6e-103 380.2 356 60.1
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.7e-103 379.4 358 59.5
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 2.7e-103 379.4 362 59.9
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 4.7e-103 378.6 359 60.2
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 8.0e-103 377.9 351 60.1
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.4e-102 377.1 360 59.4
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 1.4e-102 377.1 362 59.7
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 2.3e-102 376.3 357 59.9
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 3.0e-102 375.9 368 58.4
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 4.0e-102 375.6 355 60.0
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 6.8e-102 374.8 355 59.7
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 6.8e-102 374.8 350 60.0
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 8.8e-102 374.4 350 59.7
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.2e-101 374.0 356 59.8
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.2e-101 374.0 362 58.3
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.5e-101 373.6 365 57.5
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.5e-101 373.6 350 60.0
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.0e-101 373.2 361 58.4
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 2.0e-101 373.2 355 58.9
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 2.0e-101 373.2 354 60.5
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.6e-101 372.9 356 59.3
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 2.6e-101 372.9 350 60.0
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 2.6e-101 372.9 350 60.0
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 2.6e-101 372.9 350 60.0
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 2.6e-101 372.9 355 58.9
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 3.4e-101 372.5 356 58.7
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 4.4e-101 372.1 355 59.4
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.4e-101 372.1 362 57.5
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 5.7e-101 371.7 350 59.7
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 5.7e-101 371.7 355 58.0
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 5.7e-101 371.7 353 59.5
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 5.7e-101 371.7 363 59.0
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 7.5e-101 371.3 350 59.4
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 7.5e-101 371.3 361 57.9
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.7e-100 369.0 360 58.6
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 4.8e-100 368.6 354 58.2
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 6.3e-100 368.2 355 58.9
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 8.3e-100 367.9 355 58.3
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 8.3e-100 367.9 356 58.4
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 8.3e-100 367.9 365 57.0
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 8.3e-100 367.9 365 57.0
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.1e-99 367.5 355 58.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.4e-99 367.1 346 59.0
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.8e-99 366.7 355 58.9
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 1.8e-99 366.7 356 58.7
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 1.8e-99 366.7 356 58.7
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.8e-99 366.7 355 58.3
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.8e-99 366.7 350 59.4
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 2.4e-99 366.3 356 59.3
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 4.1e-99 365.5 356 58.7
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 4.1e-99 365.5 345 58.8
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 4.1e-99 365.5 356 58.1
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 4.1e-99 365.5 350 58.0
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 4.1e-99 365.5 354 57.6
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 7.0e-99 364.8 350 58.0
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 7.0e-99 364.8 386 54.9
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 9.1e-99 364.4 355 58.6
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 9.1e-99 364.4 355 58.3
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 9.1e-99 364.4 356 57.6
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.2e-98 364.0 356 58.7
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-98 364.0 356 57.6
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.2e-98 364.0 357 56.9
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 4.5e-98 362.1 357 56.6
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.7e-98 361.3 356 57.3
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.7e-98 361.3 356 57.3
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.3e-97 360.5 362 58.3
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 2.3e-97 359.8 365 56.4
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 2.9e-97 359.4 356 56.5
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-96 356.7 356 56.5
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-96 356.7 373 54.7
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.9e-96 356.7 358 57.0
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 4.2e-96 355.5 365 56.7
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 7.2e-96 354.8 355 56.9
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 9.5e-96 354.4 350 57.7
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 9.5e-96 354.4 350 57.7
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 9.5e-96 354.4 348 57.5
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 9.5e-96 354.4 354 56.8
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.2e-95 354.0 349 57.9
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 1.6e-95 353.6 355 56.6
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 3.6e-95 352.4 381 54.6
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 4.7e-95 352.1 365 56.2
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.0e-94 350.9 348 56.9
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.0e-94 349.4 345 56.5
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 5.2e-94 348.6 351 56.7
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 7.5e-93 344.7 355 54.1
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 7.5e-93 344.7 325 58.8
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 9.8e-93 344.4 349 55.6
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.7e-92 343.6 373 53.4
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.1e-91 340.9 350 56.3
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 4.1e-91 339.0 363 55.6
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 2.7e-90 336.3 397 50.9
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.3e-89 334.0 329 57.4
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.9e-89 332.4 409 49.4
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 3.3e-88 329.3 387 48.8
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.8e-87 326.2 312 59.9
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.8e-86 323.6 403 49.1
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 8.9e-86 321.2 337 54.6
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 3.7e-84 315.8 354 52.0
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 6.4e-84 315.1 354 50.0
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 6.0e-82 308.5 364 51.6
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 2.3e-81 306.6 336 54.5
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.0e-81 306.2 388 47.9
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 5.0e-81 305.4 332 53.3
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.1e-80 304.3 349 49.3
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.5e-80 303.9 356 52.8
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.3e-76 290.8 344 48.5
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 2.9e-76 289.7 295 57.3
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 4.9e-76 288.9 364 46.4
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 7.1e-75 285.0 331 52.3
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 7.1e-75 285.0 326 52.1
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.1e-74 283.5 354 47.2
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.1e-74 283.5 354 47.2
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 3.5e-74 282.7 348 45.7
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 6.0e-74 282.0 331 49.5
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.9e-72 276.9 299 55.5
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.8e-71 273.1 329 48.0
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.6e-71 272.7 350 48.6
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.0e-69 266.9 378 43.4
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.3e-68 264.2 302 49.0
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 6.0e-66 255.4 238 61.8
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.3e-65 254.2 355 41.7
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 2.1e-63 246.9 273 54.9
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 3.1e-62 243.0 268 54.9
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 5.2e-62 242.3 238 57.6
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.4e-59 234.2 230 56.5
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.5e-58 229.6 300 45.7
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.9e-57 226.1 265 51.3
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.3e-56 223.0 228 56.1
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.3e-55 221.1 236 53.0
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 6.2e-55 218.8 324 41.7
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 2.3e-49 200.3 192 59.9
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 7.9e-42 175.3 156 60.3
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.6e-39 167.5 165 55.2
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 2.6e-37 160.2 256 43.8
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.7e-36 157.5 325 39.1
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.4e-35 154.5 138 58.0
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.8e-33 147.5 324 34.3
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 6.2e-31 139.0 189 44.4
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 1.4e-30 137.9 178 47.8
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-28 131.0 125 56.0
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 5.0e-28 129.4 102 62.7
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.6e-26 124.4 123 55.3
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.5e-24 117.1 135 58.5
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.7e-23 113.2 104 56.7
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 1.4e-22 111.3 261 31.0
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 5.3e-22 109.4 85 62.4
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 9.0e-22 108.6 77 63.6
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 2.9e-20 103.6 81 60.5
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 4.2e-19 99.8 77 63.6
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 1.1e-16 91.7 65 66.2
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 7.4e-16 89.0 210 34.3
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.1e-14 83.6 72 54.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 3.1e-14 83.6 110 48.2
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 4.5e-13 79.7 64 70.3
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 7.7e-13 79.0 80 56.2
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 8.5e-12 75.5 55 65.5
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.5e-08 64.7 38 84.2
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 5.7e-08 62.8 56 64.3
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 3.1e-06 57.0 45 57.8


User provided reference genes

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