Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01683 Eucalyptus grandis HOM05D004343 ORTHO05D029325 2.0e-49 198.7 97 100.0
Eucgr.B01666 Eucalyptus grandis HOM05D004343 ORTHO05D005695 2.5e-28 128.6 68 95.6
FvH4_4g34140 Fragaria vesca HOM05D004343 ORTHO05D005695 1.6e-27 125.9 68 92.6
FAN07G1173 Fragaria x ananassa HOM05D004343 ORTHO05D005695 1.6e-27 125.9 68 92.6
FAN12G0317 Fragaria x ananassa HOM05D004343 ORTHO05D005695 1.6e-27 125.9 68 92.6
FAN17G1932 Fragaria x ananassa HOM05D004343 ORTHO05D005695 1.6e-27 125.9 68 92.6
RcHm_v2.0_Chr4g0443651 Rosa chinensis HOM05D004343 ORTHO05D005695 1.6e-27 125.9 68 92.6
PGR119G1808 Punica granatum HOM05D004343 ORTHO05D005695 2.1e-27 125.6 68 94.1
Eucgr.B01668 Eucalyptus grandis HOM05D004343 ORTHO05D005695 2.8e-27 125.2 68 94.1
Psat2g104920 Pisum sativum HOM05D004343 ORTHO05D005695 3.7e-27 124.8 68 91.2
TPR.G40832 Trifolium pratense HOM05D004343 ORTHO05D005695 4.8e-27 124.4 68 92.6
EL10Ac6g13693 Beta vulgaris HOM05D004343 ORTHO05D005695 8.1e-27 123.6 68 89.7
TAR371G0394 Trochodendron aralioides HOM05D004343 ORTHO05D005695 8.1e-27 123.6 68 92.6
AUR62005396 Chenopodium quinoa HOM05D004343 ORTHO05D005695 1.1e-26 123.2 68 91.2
Hma1.2p1_0160F.1_g070980 Hydrangea macrophylla HOM05D004343 ORTHO05D005695 1.8e-26 122.5 68 91.2
Nn2g14843 Nelumbo nucifera HOM05D004343 ORTHO05D005695 1.8e-26 122.5 68 91.2
Actinidia15052 Actinidia chinensis HOM05D004343 ORTHO05D005695 2.4e-26 122.1 68 91.2
Ah.03g132780 Amaranthus hybridus HOM05D004343 ORTHO05D005695 2.4e-26 122.1 68 88.2
Cpa.g.sc69.63 Carica papaya HOM05D004343 ORTHO05D005695 2.4e-26 122.1 68 91.2
Ca_03146_v3 Cicer arietinum L. HOM05D004343 ORTHO05D005695 2.4e-26 122.1 68 91.2
Eucgr.H02571 Eucalyptus grandis HOM05D004343 ORTHO05D005695 2.4e-26 122.1 68 91.2
HanXRQChr17g0539451 Helianthus annuus HOM05D004343 ORTHO05D005695 2.4e-26 122.1 68 89.7
Peaxi162Scf01286g00001 Petunia axillaris HOM05D004343 ORTHO05D005695 2.4e-26 122.1 68 89.7
Sabra15G0094700 Salix brachista HOM05D004343 ORTHO05D005695 2.4e-26 122.1 68 89.7
Thecc.02G252600 Theobroma cacao HOM05D004343 ORTHO05D005695 2.4e-26 122.1 68 89.7
Sc04g0009240 Simmondsia chinensis HOM05D004343 ORTHO05D005695 3.1e-26 121.7 68 88.2
CSS0036353 Camellia sinensis var. sinensis HOM05D004343 ORTHO05D005695 4.0e-26 121.3 68 89.7
CiPaw.06G071000 Carya illinoinensis HOM05D004343 ORTHO05D005695 4.0e-26 121.3 68 91.2
Lj6A807T88 Lonicera japonica HOM05D004343 ORTHO05D005695 4.0e-26 121.3 68 91.2
AL2G16200 Arabidopsis lyrata HOM05D004343 ORTHO05D005695 5.3e-26 120.9 68 88.2
AT1G60490 Arabidopsis thaliana HOM05D004343 ORTHO05D005695 5.3e-26 120.9 68 88.2
AUR62014058 Chenopodium quinoa HOM05D004343 ORTHO05D005695 5.3e-26 120.9 68 89.7
PSO675G7676 Papaver somniferum HOM05D004343 ORTHO05D005695 5.3e-26 120.9 68 89.7
Sabra12G0053500 Salix brachista HOM05D004343 ORTHO05D005695 5.3e-26 120.9 68 88.2
Dinv15280 Davidia involucrata HOM05D004343 ORTHO05D005695 6.9e-26 120.6 97 69.1
Glyma.06G096300 Glycine max HOM05D004343 ORTHO05D005695 6.9e-26 120.6 71 84.5
Glyma.04G094500 Glycine max HOM05D004343 ORTHO05D005695 9.0e-26 120.2 68 89.7
Hma1.2p1_0536F.1_g173910 Hydrangea macrophylla HOM05D004343 ORTHO05D005695 9.0e-26 120.2 68 89.7
Lalb_Chr09g0326321 Lupinus albus HOM05D004343 ORTHO05D005695 9.0e-26 120.2 68 89.7
Manes.12G027200 Manihot esculenta HOM05D004343 ORTHO05D005695 9.0e-26 120.2 68 89.7
Prupe.1G251400 Prunus persica HOM05D004343 ORTHO05D005695 9.0e-26 120.2 68 89.7
Ciclev10030717m.g Citrus clementina HOM05D004343 ORTHO05D005695 1.2e-25 119.8 68 88.2
COL.COLO4_24195 Corchorus olitorius HOM05D004343 ORTHO05D005695 1.2e-25 119.8 68 88.2
Gohir.A01G161800 Gossypium hirsutum HOM05D004343 ORTHO05D005695 1.2e-25 119.8 68 88.2
Gohir.D01G149200 Gossypium hirsutum HOM05D004343 ORTHO05D005695 1.2e-25 119.8 68 88.2
Gorai.002G185300 Gossypium raimondii HOM05D004343 ORTHO05D005695 1.2e-25 119.8 68 88.2
MBI16_g27084_MAGBIO Magnolia biondii HOM05D004343 ORTHO05D005695 1.2e-25 119.8 68 91.2
TWI75G1525 Tripterygium wilfordii HOM05D004343 ORTHO05D005695 1.2e-25 119.8 68 89.7
ClCG08G018000 Citrullus lanatus HOM05D004343 ORTHO05D005695 1.5e-25 119.4 68 89.7
MELO3C010667.2 Cucumis melo HOM05D004343 ORTHO05D005695 1.5e-25 119.4 68 89.7
CsaV3_2G024650 Cucumis sativus L. HOM05D004343 ORTHO05D005695 1.5e-25 119.4 68 89.7
HanXRQChr14g0446801 Helianthus annuus HOM05D004343 ORTHO05D005695 1.5e-25 119.4 68 89.7
Medtr5g034120 Medicago truncatula HOM05D004343 ORTHO05D005695 1.5e-25 119.4 68 89.7
Sed0015591 Sechium edule HOM05D004343 ORTHO05D005695 1.5e-25 119.4 68 89.7
Cc11_g15270 Coffea canephora HOM05D004343 ORTHO05D005695 2.0e-25 119.0 68 88.2
Lsat_1_v5_gn_4_161060 Lactuca sativa HOM05D004343 ORTHO05D005695 2.0e-25 119.0 68 89.7
BcaB07g31219 Brassica carinata HOM05D004343 ORTHO05D005695 2.6e-25 118.6 68 88.2
BcaC04g22231 Brassica carinata HOM05D004343 ORTHO05D005695 2.6e-25 118.6 68 88.2
A09p17490 Brassica napus HOM05D004343 ORTHO05D005695 2.6e-25 118.6 68 88.2
C09p21800 Brassica napus HOM05D004343 ORTHO05D005695 2.6e-25 118.6 68 88.2
BolC9t55085H Brassica oleracea HOM05D004343 ORTHO05D005695 2.6e-25 118.6 68 88.2
BraA09t37375Z Brassica rapa HOM05D004343 ORTHO05D005695 2.6e-25 118.6 68 88.2
Thhalv10023282m.g Eutrema salsugineum HOM05D004343 ORTHO05D005695 2.6e-25 118.6 68 88.2
Lj2g0023088 Lotus japonicus HOM05D004343 ORTHO05D005695 2.6e-25 118.6 68 88.2
TWI36G0660 Tripterygium wilfordii HOM05D004343 ORTHO05D005695 2.6e-25 118.6 68 89.7
ECA246G3761 Erigeron canadensis HOM05D004343 ORTHO05D005695 3.4e-25 118.2 68 88.2
Lalb_Chr05g0216791 Lupinus albus HOM05D004343 ORTHO05D005695 3.4e-25 118.2 68 88.2
MD13G1093900 Malus domestica HOM05D004343 ORTHO05D005695 3.4e-25 118.2 68 88.2
SalBow8G4047 Salvia bowleyana HOM05D004343 ORTHO05D005695 3.4e-25 118.2 68 88.2
Hund25360 Selenicereus undatus HOM05D004343 ORTHO05D005695 3.4e-25 118.2 68 86.8
GSVIVG01013767001 Vitis vinifera HOM05D004343 ORTHO05D005695 3.4e-25 118.2 68 88.2
TAR622G0032 Trochodendron aralioides HOM05D004343 ORTHO05D005695 4.5e-25 117.9 68 88.2
Aqoxy3G02910 Aquilegia oxysepala HOM05D004343 ORTHO05D005695 5.8e-25 117.5 68 88.2
Cfa009167 Carpinus fangiana HOM05D004343 ORTHO05D005695 5.8e-25 117.5 68 88.2
DCAR_018086 Daucus carota HOM05D004343 ORTHO05D005695 5.8e-25 117.5 68 88.2
Migut.M00070 Erythranthe guttata HOM05D004343 ORTHO05D005695 5.8e-25 117.5 68 88.2
Nitab4.5_0000147g0050 Nicotiana tabacum HOM05D004343 ORTHO05D005695 5.8e-25 117.5 68 88.2
Nitab4.5_0001663g0240 Nicotiana tabacum HOM05D004343 ORTHO05D005695 5.8e-25 117.5 68 88.2
Potri.012G075100 Populus trichocarpa HOM05D004343 ORTHO05D005695 5.8e-25 117.5 68 88.2
THA.LOC104809607 Tarenaya hassleriana HOM05D004343 ORTHO05D005695 5.8e-25 117.5 68 86.8
Atru.chr13.1904 Acer truncatum HOM05D004343 ORTHO05D005695 7.6e-25 117.1 68 86.8
CANSAT01G0446 Cannabis sativa HOM05D004343 ORTHO05D005695 7.6e-25 117.1 68 89.7
Carub.0002s0485 Capsella rubella HOM05D004343 ORTHO05D005695 7.6e-25 117.1 68 86.8
MD16G1095200 Malus domestica HOM05D004343 ORTHO05D005695 9.9e-25 116.7 68 86.8
vmacro16235 Vaccinium macrocarpon HOM05D004343 ORTHO05D005695 9.9e-25 116.7 68 89.7
HPP92_021387 Vanilla planifolia HOM05D004343 ORTHO05D005695 9.9e-25 116.7 68 88.2
CAN.G1905.4 Capsicum annuum HOM05D004343 ORTHO05D005695 1.3e-24 116.3 68 86.8
CARHR052540 Cardamine hirsuta HOM05D004343 ORTHO05D005695 1.3e-24 116.3 68 86.8
Haze_12200 Corylus avellana HOM05D004343 ORTHO05D005695 1.3e-24 116.3 68 86.8
Phvul.002G070100 Phaseolus vulgaris HOM05D004343 ORTHO05D005695 1.3e-24 116.3 68 88.2
Solyc04g015350.3 Solanum lycopersicum HOM05D004343 ORTHO05D005695 1.3e-24 116.3 68 86.8
VMungo1215G0144 Vigna mungo HOM05D004343 ORTHO05D005695 1.3e-24 116.3 68 88.2
Aa31LG2G9960 Aethionema arabicum HOM05D004343 ORTHO05D005695 2.2e-24 115.5 82 74.4
ATR0624G072 Amborella trichopoda HOM05D004343 ORTHO05D005695 2.2e-24 115.5 68 86.8
MSTRG.6617 Avicennia marina HOM05D004343 ORTHO05D005695 2.2e-24 115.5 68 86.8
arahy.Tifrunner.gnm1.ann1.NH5LZK Arachis hypogaea HOM05D004343 ORTHO05D005695 2.9e-24 115.2 68 86.8
arahy.Tifrunner.gnm1.ann1.V3QVP0 Arachis hypogaea HOM05D004343 ORTHO05D005695 2.9e-24 115.2 68 86.8
BcaC02g10625 Brassica carinata HOM05D004343 ORTHO05D005695 2.9e-24 115.2 68 83.8
BcaC06g31812 Brassica carinata HOM05D004343 ORTHO05D005695 2.9e-24 115.2 68 83.8
C04p25930 Brassica napus HOM05D004343 ORTHO05D005695 2.9e-24 115.2 68 83.8
C05p51030 Brassica napus HOM05D004343 ORTHO05D005695 2.9e-24 115.2 68 83.8
CDE05G0167 Ceratophyllum demersum HOM05D004343 ORTHO05D005695 2.9e-24 115.2 68 86.8
Dinv24834 Davidia involucrata HOM05D004343 ORTHO05D005695 2.9e-24 115.2 68 86.8
Rhsim12G0115800 Rhododendron simsii HOM05D004343 ORTHO05D005695 2.9e-24 115.2 76 81.6
Sp2g04240 Schrenkiella parvula HOM05D004343 ORTHO05D005695 2.9e-24 115.2 68 85.3
Sopen04g007420 Solanum pennellii HOM05D004343 ORTHO05D005695 2.9e-24 115.2 68 85.3
Oeu054064.1 Olea europaea HOM05D004343 ORTHO05D005695 4.9e-24 114.4 68 86.8
QL03p059677 Quercus lobata HOM05D004343 ORTHO05D005695 8.4e-24 113.6 68 86.8
THA.LOC104823649 Tarenaya hassleriana HOM05D004343 ORTHO05D005695 8.4e-24 113.6 68 85.3
SGA_v2.0_scaffold181G39704 Striga asiatica HOM05D004343 ORTHO05D005695 3.2e-23 111.7 90 70.0
Os05g0180600 Oryza sativa ssp. japonica HOM05D004343 ORTHO05D005695 5.5e-23 110.9 66 81.8
FAN22G1014 Fragaria x ananassa HOM05D004343 ORTHO05D005695 3.5e-22 108.2 83 72.3
Zm00001eb178330 Zea mays HOM05D004343 ORTHO05D005695 1.8e-21 105.9 67 80.6
AagrBONN_evm.TU.Sc2ySwM_228.633 Anthoceros agrestis HOM05D004343 ORTHO05D005695 6.7e-21 104.0 68 79.4
Pp3c10_8910 Physcomitrium patens HOM05D004343 ORTHO05D005695 4.3e-20 101.3 68 77.9
Os08g0307400 Oryza sativa ssp. japonica HOM05D004343 ORTHO05D005695 1.6e-19 99.4 84 64.3
Mapoly0003s0185 Marchantia polymorpha HOM05D004343 ORTHO05D005695 6.2e-19 97.4 67 74.6
Oeu036965.1 Olea europaea HOM05D004343 ORTHO05D029325 6.2e-19 97.4 101 58.4
CBR_g5616 Chara braunii HOM05D004343 ORTHO05D005695 8.2e-19 97.1 67 74.6
Atru.chr11.2050 Acer truncatum HOM05D004343 ORTHO05D005695 5.3e-18 94.4 56 89.3
SMO134G0165 Selaginella moellendorffii HOM05D004343 ORTHO05D005695 2.6e-17 92.0 68 70.6
Duzib251G0882 Durio zibethinus HOM05D004343 ORTHO05D005695 7.1e-15 84.0 47 91.5
Duzib268G1271 Durio zibethinus HOM05D004343 ORTHO05D005695 6.0e-14 80.9 44 95.5
SMO228G0017 Selaginella moellendorffii HOM05D004343 ORTHO05D005695 6.0e-14 80.9 69 65.2
MCO10G171 Micromonas commoda HOM05D004343 ORTHO05D005695 1.3e-13 79.7 88 52.3
HanXRQChr08g0213921 Helianthus annuus HOM05D004343 ORTHO05D029325 8.7e-13 77.0 44 88.6
HanXRQChr09g0267281 Helianthus annuus HOM05D004343 ORTHO05D005695 8.7e-13 77.0 44 81.8
HanXRQChr05g0137451 Helianthus annuus HOM05D004343 ORTHO05D029325 2.5e-12 75.5 44 88.6
Cre01.g035500 Chlamydomonas reinhardtii HOM05D004343 ORTHO05D005695 4.8e-11 71.2 69 58.0
Cfa022200 Carpinus fangiana HOM05D004343 ORTHO05D005695 6.3e-11 70.9 58 60.3
PRCOL_00000780 Prasinoderma coloniale HOM05D004343 ORTHO05D005695 1.9e-07 59.3 88 43.2
SMO165G0116 Selaginella moellendorffii HOM05D004343 ORTHO05D005695 4.6e-06 54.7 70 48.6


User provided reference genes

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