Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 4.8e-195 684.5 386 100.0
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.4e-186 655.6 376 98.1
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 4.0e-93 345.9 375 55.7
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 7.6e-92 341.7 394 53.8
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 9.9e-92 341.3 384 53.6
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 4.1e-90 335.9 401 52.6
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 3.5e-89 332.8 390 52.6
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.0e-88 331.3 384 54.7
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 2.3e-88 330.1 400 54.0
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 4.7e-86 322.4 404 53.0
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 8.1e-86 321.6 389 51.4
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 8.1e-86 321.6 389 51.7
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.8e-85 320.5 389 51.7
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 3.4e-84 316.2 389 50.4
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 5.8e-84 315.5 414 50.0
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.7e-83 313.9 384 53.1
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.4e-82 310.8 390 49.0
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 4.2e-82 309.3 389 51.9
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 2.7e-81 306.6 379 52.0
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 7.8e-81 305.1 385 50.9
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 1.0e-80 304.7 411 49.4
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.0e-80 304.7 390 51.3
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 3.0e-80 303.1 382 51.6
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.5e-79 300.8 392 50.3
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 3.3e-79 299.7 386 49.0
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.3e-78 297.7 389 52.2
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.6e-78 297.4 405 51.9
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.6e-78 297.4 385 51.7
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.1e-78 297.0 419 48.4
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 8.1e-78 295.0 386 48.2
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 3.1e-77 293.1 422 46.9
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.3e-77 292.4 383 50.4
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.2e-76 291.2 396 51.8
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.0e-76 290.4 383 49.6
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 3.4e-76 289.7 402 47.5
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.9e-75 286.6 382 49.2
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 3.8e-75 286.2 397 47.1
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.9e-74 283.9 413 48.7
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 4.2e-74 282.7 373 50.1
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.3e-74 281.6 398 47.2
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 9.3e-74 281.6 395 47.3
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 3.5e-73 279.6 380 49.7
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 3.5e-73 279.6 387 46.5
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.8e-72 277.3 401 47.1
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.1e-71 274.6 378 44.7
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.9e-71 273.9 421 45.8
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 4.3e-71 272.7 383 45.4
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 4.3e-71 272.7 401 49.4
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 5.6e-71 272.3 388 44.6
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 1.6e-70 270.8 388 44.6
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 6.2e-70 268.9 413 47.2
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 9.0e-69 265.0 373 46.9
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.2e-68 264.6 403 46.4
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.2e-68 264.6 387 45.5
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.5e-68 264.2 398 45.0
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 2.0e-68 263.8 324 50.6
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.0e-68 263.8 392 47.7
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 4.5e-68 262.7 385 45.5
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 5.8e-68 262.3 389 46.5
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.7e-67 260.8 423 44.0
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 3.8e-67 259.6 366 45.9
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.4e-66 257.7 399 44.6
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.9e-66 257.3 399 46.6
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.4e-66 256.9 385 44.4
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 3.2e-66 256.5 386 43.0
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.6e-65 254.2 388 42.5
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 2.7e-65 253.4 408 43.1
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 6.0e-65 252.3 351 47.9
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 1.1e-63 248.1 392 44.1
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.5e-63 247.7 368 44.0
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 3.3e-63 246.5 378 45.5
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 9.6e-63 245.0 405 46.7
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.1e-62 243.8 386 43.0
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 6.2e-62 242.3 412 45.9
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 2.4e-61 240.4 378 42.3
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 2.4e-61 240.4 397 42.1
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 5.3e-61 239.2 418 46.7
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 9.0e-61 238.4 326 46.6
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.2e-60 238.0 378 42.1
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 4.5e-60 236.1 433 39.5
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 5.8e-60 235.7 389 45.5
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 2.9e-59 233.4 357 43.7
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.9e-59 233.4 409 45.5
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 4.9e-59 232.6 387 46.3
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.5e-58 229.2 413 44.6
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 7.1e-58 228.8 383 43.1
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 1.2e-57 228.0 394 42.4
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.6e-57 227.6 323 46.4
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.7e-57 226.9 422 45.0
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.7e-57 226.9 311 46.0
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.3e-56 224.6 387 43.7
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.8e-56 224.2 414 42.5
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 3.0e-56 223.4 406 41.6
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 3.9e-56 223.0 444 38.7
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 5.1e-56 222.6 391 45.3
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 8.7e-56 221.9 387 43.9
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.1e-55 221.5 418 43.1
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.5e-55 221.1 379 45.9
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.5e-55 221.1 379 45.9
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.5e-55 221.1 386 45.6
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.9e-55 220.7 370 50.3
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.5e-55 220.3 400 44.2
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.3e-55 219.9 388 41.0
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 4.3e-55 219.5 392 44.9
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 4.3e-55 219.5 392 44.9
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 4.3e-55 219.5 392 44.9
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 1.6e-54 217.6 375 41.9
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.4e-53 214.5 400 45.8
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 5.3e-53 212.6 429 44.3
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 2.0e-52 210.7 383 40.7
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 2.6e-52 210.3 344 47.4
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 2.6e-52 210.3 344 47.4
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 2.9e-51 206.8 354 44.6
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.1e-50 204.9 384 47.9
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 5.5e-50 202.6 367 40.3
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 7.2e-50 202.2 405 42.5
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 7.2e-50 202.2 405 42.5
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 9.4e-50 201.8 346 43.9
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.0e-48 198.4 417 36.9
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.3e-48 197.2 222 54.1
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 5.7e-47 192.6 377 43.0
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 3.7e-46 189.9 390 40.0
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 4.8e-46 189.5 180 61.1
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.1e-45 188.3 407 40.3
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 1.7e-43 181.0 343 39.7
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 2.5e-42 177.2 355 39.4
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 3.2e-42 176.8 406 39.4
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 3.2e-42 176.8 200 53.0
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.4e-40 171.4 383 36.3
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.1e-40 169.5 421 38.7
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 2.0e-39 167.5 348 40.5
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 5.7e-39 166.0 276 46.0
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.1e-37 159.8 248 44.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 9.1e-37 158.7 364 42.0
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 2.8e-30 137.1 384 34.6
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 3.1e-29 133.7 270 40.0
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.6e-28 130.6 249 43.8
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 3.6e-25 120.2 201 45.3
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.5e-18 98.2 562 25.4
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 6.1e-17 92.8 152 45.4
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 3.0e-16 90.5 332 35.5
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 4.8e-14 83.2 217 35.0
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 1.5e-07 61.6 52 63.5


User provided reference genes

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