Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 0.0e+00 1075.5 624 100.0
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 3.7e-213 745.3 619 70.0
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.3e-205 720.3 620 64.7
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.7e-205 719.9 621 64.1
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 3.7e-205 718.8 621 65.1
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 2.4e-204 716.1 625 66.7
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 6.9e-204 714.5 621 70.4
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 9.1e-204 714.1 597 71.5
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.2e-203 713.8 611 64.0
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.2e-203 713.8 622 69.6
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 4.5e-203 711.8 596 70.5
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 2.9e-202 709.1 620 66.6
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 3.8e-202 708.8 622 65.9
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 8.5e-202 707.6 625 66.2
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 8.5e-202 707.6 622 63.5
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.9e-201 706.4 622 63.3
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 7.2e-201 704.5 624 65.9
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.2e-200 703.7 619 62.5
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.6e-200 703.4 627 64.0
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 6.1e-200 701.4 625 63.0
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 1.4e-199 700.3 625 64.8
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.4e-199 700.3 622 67.8
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 1.8e-199 699.9 619 64.0
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 5.1e-199 698.4 621 62.2
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 6.7e-199 698.0 581 69.9
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 8.8e-199 697.6 621 62.2
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.3e-198 695.7 517 74.7
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.3e-197 693.7 621 65.5
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 4.8e-197 691.8 617 62.1
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 1.1e-196 690.6 516 73.4
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 5.3e-196 688.3 630 64.0
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.0e-194 684.1 626 62.1
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.4e-193 680.2 636 60.5
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 4.2e-193 678.7 594 62.5
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 4.7e-192 675.2 621 64.1
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 6.1e-192 674.9 623 62.6
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 1.8e-191 673.3 613 63.6
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 3.9e-191 672.2 622 63.8
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 5.2e-191 671.8 594 62.1
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 6.7e-191 671.4 631 60.4
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 8.8e-191 671.0 625 63.7
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 1.5e-190 670.2 631 61.6
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 1.5e-190 670.2 695 61.6
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 2.6e-190 669.5 633 61.0
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 4.4e-190 668.7 632 58.9
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.3e-189 667.2 598 62.9
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 1.3e-189 667.2 614 63.0
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.3e-189 667.2 626 62.9
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.3e-189 667.2 619 62.2
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.2e-189 666.4 488 71.1
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 2.2e-189 666.4 626 62.5
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.8e-189 665.2 624 61.9
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.8e-188 663.3 623 62.3
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 2.4e-188 662.9 615 60.5
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 2.0e-187 659.8 625 61.3
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 3.5e-187 659.1 617 62.4
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 7.7e-187 657.9 585 61.9
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.0e-186 657.5 635 59.2
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 8.5e-186 654.4 614 62.7
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 1.1e-185 654.1 603 61.7
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 3.2e-185 652.5 630 59.8
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.2e-185 652.5 617 59.8
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 5.5e-185 651.7 616 58.8
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 5.5e-185 651.7 651 62.7
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 7.2e-185 651.4 640 61.6
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 7.2e-185 651.4 627 59.5
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 9.4e-185 651.0 602 60.0
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 2.1e-184 649.8 609 61.4
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.1e-184 649.8 631 59.1
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 2.1e-184 649.8 598 60.7
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 2.1e-184 649.8 630 61.0
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 3.6e-184 649.0 601 62.6
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 4.7e-184 648.7 618 58.9
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 6.1e-184 648.3 541 65.6
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 1.4e-183 647.1 575 67.3
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.8e-183 646.7 612 61.1
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 6.8e-183 644.8 594 60.4
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 8.8e-183 644.4 626 61.3
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 8.8e-183 644.4 618 58.4
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 1.2e-182 644.0 619 59.8
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 1.5e-182 643.7 509 65.4
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 3.4e-182 642.5 629 61.7
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 4.4e-182 642.1 597 59.5
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.7e-181 640.2 628 61.0
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.7e-181 640.2 608 59.0
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 1.8e-180 636.7 620 61.6
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 4.1e-180 635.6 621 59.6
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.2e-179 634.0 634 57.9
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 3.5e-179 632.5 628 58.0
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 7.7e-179 631.3 596 58.6
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 3.8e-178 629.0 650 57.2
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 6.5e-178 628.2 618 60.0
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 6.5e-178 628.2 637 59.0
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.9e-177 626.7 622 59.3
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 2.5e-177 626.3 633 56.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.2e-177 625.5 610 59.8
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 7.2e-177 624.8 616 57.5
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 5.2e-175 618.6 611 56.8
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.5e-174 617.1 641 57.6
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.4e-174 615.5 628 57.6
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 5.7e-174 615.1 601 58.1
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 9.8e-174 614.4 622 55.5
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.7e-173 613.6 621 57.2
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 2.8e-173 612.8 675 54.8
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.8e-173 612.1 645 56.6
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.4e-172 610.5 661 55.5
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 2.4e-172 609.8 603 58.5
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 2.4e-172 609.8 576 59.2
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 7.0e-172 608.2 622 56.6
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.5e-171 605.9 604 57.3
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.3e-170 604.0 487 67.6
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 6.6e-170 601.7 621 57.8
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 6.1e-168 595.1 505 65.3
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 1.4e-167 594.0 623 54.7
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 1.2e-166 590.9 621 54.8
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 2.0e-166 590.1 612 55.7
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 4.4e-166 589.0 612 54.1
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 1.6e-163 580.5 610 54.6
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.2e-160 570.9 618 55.8
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.2e-160 570.9 616 53.7
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.2e-160 570.9 616 53.9
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.6e-160 570.5 610 53.9
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 2.1e-160 570.1 610 53.8
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 3.6e-160 569.3 610 53.6
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 4.7e-160 568.9 610 53.9
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 8.0e-160 568.2 604 57.3
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 5.8e-158 562.0 599 56.4
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 2.4e-156 556.6 571 58.3
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 2.4e-156 556.6 603 53.9
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 2.7e-155 553.1 582 57.0
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.7e-154 550.4 596 55.9
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.8e-152 543.1 607 52.6
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 8.0e-152 541.6 524 58.0
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 3.7e-141 506.1 431 62.2
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.5e-137 494.2 611 49.1
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.5e-137 494.2 386 71.2
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.5e-137 494.2 603 48.1
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 9.6e-137 491.5 664 47.1
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 6.4e-133 478.8 612 49.0
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.9e-129 467.2 595 50.3
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 7.6e-126 455.3 586 47.6
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.7e-125 454.1 442 56.3
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.3e-119 432.6 338 69.2
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 1.9e-113 414.1 393 60.3
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 1.9e-97 360.9 316 62.7
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.5e-97 360.5 338 60.9
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 1.4e-95 354.8 625 37.9
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 1.5e-94 351.3 367 54.8
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 2.6e-65 254.2 163 81.6
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 4.0e-58 230.3 270 54.8
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 8.0e-51 206.1 228 55.7
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 1.7e-48 198.4 272 45.2
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 5.9e-46 189.9 138 74.6
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 5.4e-39 166.8 448 29.7
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.5e-33 148.7 167 55.7
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 2.1e-30 138.3 450 24.4
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 7.1e-23 113.2 555 23.1
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 6.6e-21 106.7 78 62.8
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 2.5e-20 104.8 103 50.5
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 3.6e-19 100.9 94 53.2
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 8.1e-19 99.8 83 65.1
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.7e-16 92.0 202 57.9
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 4.9e-16 90.5 66 75.8
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 1.1e-15 89.4 60 68.3
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 3.2e-15 87.8 90 57.8
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 6.6e-13 80.1 62 66.1
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.5e-12 79.0 100 47.0
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 4.3e-12 77.4 103 45.6
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 3.2e-07 61.2 35 82.9
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 9.3e-07 59.7 36 80.6
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 1.6e-06 58.9 58 56.9
Ca_07189_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 4.6e-06 57.4 250 26.4


User provided reference genes

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