Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 4.0e-153 544.7 265 100.0
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 5.9e-96 354.8 239 72.4
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 8.6e-95 350.9 236 72.5
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 9.5e-94 347.4 240 70.8
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 1.4e-92 343.6 241 70.5
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 4.0e-92 342.0 240 68.3
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 6.8e-92 341.3 252 64.7
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 2.0e-91 339.7 241 70.5
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 2.0e-91 339.7 234 70.1
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 3.4e-91 339.0 236 67.4
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 7.5e-91 337.8 240 68.8
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 9.8e-91 337.4 236 67.4
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 2.2e-90 336.3 236 69.9
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 2.2e-90 336.3 224 71.4
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 1.1e-89 334.0 236 66.5
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 3.1e-89 332.4 235 67.2
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 4.1e-89 332.0 235 66.8
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 5.4e-89 331.6 240 67.9
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 2.7e-88 329.3 240 66.2
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 3.5e-88 328.9 240 66.7
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 4.5e-88 328.6 238 67.2
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 5.9e-88 328.2 240 67.5
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 1.0e-87 327.4 242 69.4
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 1.7e-87 326.6 237 69.6
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 2.3e-87 326.2 239 65.3
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 3.9e-87 325.5 238 64.7
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 5.0e-87 325.1 240 65.4
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 1.5e-86 323.6 251 61.8
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 3.3e-86 322.4 242 68.2
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 5.6e-86 321.6 240 65.4
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 9.5e-86 320.9 244 63.1
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 9.5e-86 320.9 244 63.1
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 1.6e-85 320.1 236 64.8
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 2.8e-85 319.3 239 67.8
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 4.7e-85 318.5 240 66.2
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 4.7e-85 318.5 243 66.3
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 8.0e-85 317.8 240 63.8
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 8.0e-85 317.8 240 64.6
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 1.0e-84 317.4 240 64.2
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 1.4e-84 317.0 261 63.2
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 2.3e-84 316.2 241 63.9
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 2.3e-84 316.2 235 65.5
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 3.1e-84 315.8 238 64.7
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 8.9e-84 314.3 238 66.4
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 2.0e-83 313.2 249 62.7
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 4.4e-83 312.0 259 62.2
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 4.4e-83 312.0 240 64.6
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 7.5e-83 311.2 235 64.3
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 7.5e-83 311.2 237 63.3
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 9.8e-83 310.8 227 65.2
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 2.9e-82 309.3 271 59.8
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.4e-81 307.0 261 59.4
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 3.2e-81 305.8 241 64.3
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 4.1e-81 305.4 259 60.2
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 9.2e-81 304.3 237 62.9
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 2.7e-80 302.8 240 63.8
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 2.7e-80 302.8 210 70.5
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 6.0e-80 301.6 239 61.5
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 2.5e-78 296.2 237 62.0
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 4.3e-78 295.4 208 67.3
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 2.8e-77 292.7 258 60.5
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 6.2e-77 291.6 243 60.5
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 1.8e-76 290.0 242 61.6
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 3.1e-76 289.3 278 55.0
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.2e-75 287.3 210 67.6
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 5.8e-75 285.0 237 59.1
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 4.1e-73 278.9 228 61.4
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 1.2e-72 277.3 237 60.3
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 6.0e-72 275.0 237 59.5
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 7.8e-72 274.6 207 64.3
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 3.4e-67 259.2 206 65.0
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 1.1e-65 254.2 195 65.1
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 4.1e-65 252.3 234 57.3
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 6.6e-63 245.0 214 60.7
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 6.2e-61 238.4 237 49.4
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 2.0e-59 233.4 236 54.7
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 1.1e-57 227.6 226 49.6
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 3.2e-57 226.1 254 50.4
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 2.7e-56 223.0 221 54.3
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 2.5e-54 216.5 133 75.9
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 3.1e-52 209.5 168 59.5
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 4.4e-51 205.7 178 57.9
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 9.9e-51 204.5 248 48.4
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 6.6e-47 191.8 210 51.9
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 8.7e-47 191.4 246 45.5
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 2.8e-45 186.4 234 46.6
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 5.3e-28 129.0 116 57.8
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 3.0e-23 113.2 142 45.8
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 1.2e-19 101.3 82 63.4
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.2e-19 101.3 66 66.7
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 1.9e-17 94.0 115 48.7
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 4.6e-16 89.4 66 63.6
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 6.3e-13 79.0 104 43.3
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 9.1e-12 75.1 82 50.0
Lalb_Chr08g0246781 Lupinus albus HOM05D001816 ORTHO05D002001 5.9e-11 72.4 233 28.3
Carub.0006s2052 Capsella rubella HOM05D001816 ORTHO05D002001 2.9e-10 70.1 234 29.9
AL6G33900 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 5.0e-10 69.3 232 29.7
SMO234G0071 Selaginella moellendorffii HOM05D001816 ORTHO05D002001 1.4e-09 67.8 243 28.0
THA.LOC104807386 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.4e-09 67.8 226 29.6
BcaC03g13917 Brassica carinata HOM05D001816 ORTHO05D002001 5.5e-09 65.9 232 28.4
BNapus_Darmor_BZH_scaffold_38p00390 Brassica napus HOM05D001816 ORTHO05D002001 5.5e-09 65.9 232 28.0
C02p11280 Brassica napus HOM05D001816 ORTHO05D002001 5.5e-09 65.9 232 28.4
MCO11G803 Micromonas commoda HOM05D001816 ORTHO05D002001 5.5e-09 65.9 240 27.5
AT5G22800 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 1.2e-08 64.7 235 28.9
BolC2t07196H Brassica oleracea HOM05D001816 ORTHO05D002001 1.2e-08 64.7 232 28.0
BraA02t05688Z Brassica rapa HOM05D001816 ORTHO05D002001 1.2e-08 64.7 232 28.0
Manes.04G068300 Manihot esculenta HOM05D001816 ORTHO05D002001 1.2e-08 64.7 225 25.8
TWI31G0479 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 1.2e-08 64.7 226 27.0
Thhalv10012575m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 1.6e-08 64.3 231 27.3
ATR0712G016 Amborella trichopoda HOM05D001816 ORTHO05D002001 2.1e-08 63.9 206 27.2
TPR.G38581 Trifolium pratense HOM05D001816 ORTHO05D002001 2.1e-08 63.9 234 27.8
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 2.7e-08 63.5 225 26.7
CiPaw.05G091200 Carya illinoinensis HOM05D001816 ORTHO05D002001 3.6e-08 63.2 230 27.4
BcaB05g22693 Brassica carinata HOM05D001816 ORTHO05D002001 4.7e-08 62.8 233 27.9
Ciclev10030103m.g Citrus clementina HOM05D001816 ORTHO05D002001 4.7e-08 62.8 225 26.7
arahy.Tifrunner.gnm1.ann1.1BU1FJ Arachis hypogaea HOM05D001816 ORTHO05D002001 6.1e-08 62.4 234 28.6
arahy.Tifrunner.gnm1.ann1.X97WXI Arachis hypogaea HOM05D001816 ORTHO05D002001 6.1e-08 62.4 206 30.1
Eucgr.I01492 Eucalyptus grandis HOM05D001816 ORTHO05D002001 1.0e-07 61.6 227 27.3
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.0e-07 61.6 123 31.7
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 1.0e-07 61.6 248 28.2
Medtr3g118360 Medicago truncatula HOM05D001816 ORTHO05D002001 1.4e-07 61.2 235 27.2
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 1.8e-07 60.8 242 25.2
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 1.8e-07 60.8 244 27.0
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 2.3e-07 60.5 242 26.4
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 3.0e-07 60.1 224 25.9
Sed0019949 Sechium edule HOM05D001816 ORTHO05D002001 3.0e-07 60.1 231 26.4
CANSAT25G0387 Cannabis sativa HOM05D001816 ORTHO05D002001 5.1e-07 59.3 206 26.7
Glyma.06G001100 Glycine max HOM05D001816 ORTHO05D002001 5.1e-07 59.3 207 28.5
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 5.1e-07 59.3 244 27.0
Sp6g22620 Schrenkiella parvula HOM05D001816 ORTHO05D002001 5.1e-07 59.3 233 26.6
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 5.1e-07 59.3 254 26.8
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 6.7e-07 58.9 242 26.0
ClCG02G010990 Citrullus lanatus HOM05D001816 ORTHO05D002001 6.7e-07 58.9 231 26.0
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 6.7e-07 58.9 243 27.6
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 8.8e-07 58.5 245 25.3
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 8.8e-07 58.5 245 25.3
MELO3C013645.2 Cucumis melo HOM05D001816 ORTHO05D002001 8.8e-07 58.5 230 25.2
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 8.8e-07 58.5 254 26.8
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.1e-06 58.2 214 29.4
CBR_g34895 Chara braunii HOM05D001816 ORTHO05D002001 1.1e-06 58.2 105 39.0
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 1.1e-06 58.2 230 27.0
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 1.1e-06 58.2 252 25.8
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.5e-06 57.8 246 26.0
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 1.5e-06 57.8 219 26.9
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 1.5e-06 57.8 243 26.3
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 2.0e-06 57.4 242 25.6
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.0e-06 57.4 124 31.5
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 2.6e-06 57.0 254 27.6
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 2.6e-06 57.0 242 24.8
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 3.3e-06 56.6 243 25.5
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 3.3e-06 56.6 253 25.7
MD10G1133000 Malus domestica HOM05D001816 ORTHO05D002001 3.3e-06 56.6 239 25.9
GSVIVG01024313001 Vitis vinifera HOM05D001816 ORTHO05D002001 3.3e-06 56.6 128 32.8
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 4.4e-06 56.2 219 26.5
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 4.4e-06 56.2 219 26.5
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 5.7e-06 55.8 244 25.4
Cre02.g143200 Chlamydomonas reinhardtii HOM05D001816 ORTHO05D002001 5.7e-06 55.8 239 27.2
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 5.7e-06 55.8 224 27.7
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 5.7e-06 55.8 245 24.5
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 5.7e-06 55.8 245 24.5
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 5.7e-06 55.8 128 32.0
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 7.4e-06 55.5 222 27.0
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 9.7e-06 55.1 219 26.5
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 9.7e-06 55.1 219 26.5
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 9.7e-06 55.1 120 32.5
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 9.7e-06 55.1 243 24.3
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 9.7e-06 55.1 249 24.5
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 9.7e-06 55.1 119 31.1
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 9.7e-06 55.1 119 31.1
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 9.7e-06 55.1 243 26.3
RcHm_v2.0_Chr5g0008751 Rosa chinensis HOM05D007625 ORTHO05D343624 9.7e-06 55.1 35 74.3


User provided reference genes

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