Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 8.0e-100 367.1 184 100.0
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 4.2e-64 248.4 186 68.8
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 3.5e-63 245.4 186 68.3
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 5.6e-61 238.0 184 65.8
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 7.3e-61 237.7 188 66.5
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.3e-60 236.9 188 66.5
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 1.6e-60 236.5 183 63.4
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 3.6e-60 235.3 203 61.1
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 4.8e-60 235.0 191 63.4
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.1e-59 233.8 187 64.2
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.1e-59 233.8 187 64.2
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.1e-59 233.8 184 64.1
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 1.8e-59 233.0 184 64.1
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 1.8e-59 233.0 184 62.0
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 2.4e-59 232.6 189 66.7
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 5.3e-59 231.5 184 62.5
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 6.9e-59 231.1 184 63.6
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.2e-58 230.3 190 63.2
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 1.2e-58 230.3 184 63.6
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 1.5e-58 229.9 155 73.5
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 3.4e-58 228.8 184 59.8
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 3.4e-58 228.8 184 64.1
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 5.8e-58 228.0 188 62.2
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 5.8e-58 228.0 189 61.9
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 2.2e-57 226.1 184 65.2
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 2.2e-57 226.1 154 71.4
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 2.9e-57 225.7 184 59.2
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 6.4e-57 224.6 188 63.8
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 6.4e-57 224.6 182 59.3
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 8.4e-57 224.2 180 60.6
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 1.1e-56 223.8 184 62.5
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.4e-56 223.4 157 72.0
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 1.4e-56 223.4 152 70.4
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.9e-56 223.0 184 62.5
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.4e-56 222.6 186 62.9
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 5.4e-56 221.5 152 70.4
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 7.1e-56 221.1 184 58.7
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 7.1e-56 221.1 182 60.4
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.2e-55 220.3 152 69.1
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 1.2e-55 220.3 198 56.6
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 2.1e-55 219.5 184 61.4
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 3.5e-55 218.8 185 60.0
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 3.5e-55 218.8 189 58.7
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 7.9e-55 217.6 184 59.2
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 7.9e-55 217.6 185 59.5
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 7.9e-55 217.6 156 69.9
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 1.0e-54 217.2 184 58.7
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 1.0e-54 217.2 184 61.4
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.7e-54 216.5 152 67.8
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 3.9e-54 215.3 184 60.9
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 5.1e-54 214.9 185 60.5
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 5.1e-54 214.9 182 60.4
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 6.6e-54 214.5 184 59.2
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 8.7e-54 214.2 188 57.4
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 8.7e-54 214.2 213 53.5
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 1.9e-53 213.0 184 59.8
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 2.5e-53 212.6 187 57.2
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 4.3e-53 211.8 168 64.3
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 1.3e-52 210.3 183 59.0
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.6e-52 209.9 203 56.2
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.6e-52 209.9 199 56.3
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 2.8e-52 209.1 187 56.7
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 3.6e-52 208.8 169 59.8
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 3.6e-52 208.8 185 58.9
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 4.8e-52 208.4 187 57.2
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 6.2e-52 208.0 195 53.8
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.2e-52 208.0 202 55.9
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 6.2e-52 208.0 186 58.1
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 1.1e-51 207.2 147 66.7
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 1.1e-51 207.2 186 55.9
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 1.4e-51 206.8 185 58.4
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 2.4e-51 206.1 197 55.8
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 4.0e-51 205.3 167 60.5
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 4.0e-51 205.3 203 54.7
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 4.0e-51 205.3 151 65.6
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 5.3e-51 204.9 148 65.5
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.3e-51 204.9 208 54.3
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 5.3e-51 204.9 193 56.0
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 9.0e-51 204.1 168 60.7
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.2e-50 203.8 184 58.2
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 1.5e-50 203.4 160 65.0
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 1.5e-50 203.4 166 60.8
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 2.6e-50 202.6 188 55.9
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 2.6e-50 202.6 184 57.6
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 3.4e-50 202.2 187 56.7
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 4.5e-50 201.8 187 56.7
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 4.5e-50 201.8 184 54.9
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 4.5e-50 201.8 186 55.9
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 5.8e-50 201.4 188 56.9
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 5.8e-50 201.4 190 56.8
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 9.9e-50 200.7 153 63.4
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.3e-49 200.3 190 55.3
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 2.2e-49 199.5 185 54.6
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 6.4e-49 198.0 188 55.3
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 6.4e-49 198.0 185 58.4
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 8.4e-49 197.6 185 58.4
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 2.4e-48 196.1 187 56.7
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.2e-48 195.7 183 56.3
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 3.2e-48 195.7 178 55.6
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 4.2e-48 195.3 185 55.7
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 5.4e-48 194.9 187 55.6
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 7.1e-48 194.5 187 56.1
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 1.6e-47 193.4 187 54.0
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 6.0e-47 191.4 186 54.8
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 1.0e-46 190.7 188 53.2
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 1.8e-46 189.9 184 56.0
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 1.8e-46 189.9 170 56.5
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 1.8e-46 189.9 184 56.0
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 1.8e-46 189.9 184 56.0
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 1.8e-46 189.9 170 56.5
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 2.3e-46 189.5 170 57.6
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 3.0e-46 189.1 172 56.4
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 3.0e-46 189.1 152 59.2
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 8.7e-46 187.6 201 49.8
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 1.1e-45 187.2 184 52.2
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 7.4e-45 184.5 139 64.0
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 1.3e-44 183.7 129 68.2
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 1.6e-44 183.3 191 51.3
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 2.1e-44 183.0 176 53.4
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 2.1e-44 183.0 186 54.8
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.1e-44 183.0 152 59.9
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 2.8e-44 182.6 196 52.0
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 3.7e-44 182.2 184 52.2
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 6.2e-44 181.4 190 54.2
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 1.4e-43 180.3 166 55.4
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 5.3e-43 178.3 195 50.3
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 2.6e-42 176.0 188 51.6
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 2.6e-42 176.0 139 61.9
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 4.9e-41 171.8 187 49.7
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.9e-41 171.8 142 61.3
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 3.2e-40 169.1 145 59.3
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 4.2e-40 168.7 211 45.0
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 1.2e-39 167.2 167 51.5
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 2.1e-39 166.4 176 49.4
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 2.3e-38 162.9 187 50.3
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 4.3e-37 158.7 128 58.6
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.8e-35 153.3 191 46.6
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 1.1e-27 127.5 139 51.8
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.4e-27 127.1 180 41.7
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 2.4e-27 126.3 180 43.3
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.9e-24 116.7 69 79.7
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 6.1e-23 111.7 175 36.6
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 1.0e-22 110.9 74 68.9
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 8.8e-22 107.8 139 48.9
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 4.1e-19 99.0 56 78.6
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.6e-18 96.3 54 79.6
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 3.4e-18 95.9 55 76.4
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 6.5e-17 91.7 93 51.6
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 9.4e-16 87.8 82 54.9
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 1.0e-14 84.3 184 37.5
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 1.7e-12 77.0 50 70.0
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.6e-10 69.7 47 70.2
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.1e-08 64.3 49 59.2
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 5.5e-08 62.0 64 53.1
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 7.2e-08 61.6 55 56.4
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.2e-07 60.8 43 65.1
FAN25G3581 Fragaria x ananassa HOM05D017504 ORTHO05D022678 2.3e-06 56.6 30 83.3
MCO03G325 Micromonas commoda HOM05D004719 ORTHO05D005519 4.0e-06 55.8 143 30.1
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 5.2e-06 55.5 73 38.4


User provided reference genes

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