Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 2535.8 1290 100.0
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1788.5 1291 70.1
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1692.6 1300 64.6
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1691.8 1298 65.9
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1688.3 1298 66.7
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1684.5 1295 66.3
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1675.2 1294 65.5
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1669.1 1298 64.7
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1663.7 1296 64.2
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1650.6 1298 65.1
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1645.6 1293 64.3
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1641.7 1308 64.8
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1640.9 1293 64.3
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1632.1 1324 64.0
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1630.5 1276 65.6
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1629.8 1263 64.7
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1624.8 1295 64.5
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1620.1 1308 63.7
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1612.4 1300 64.1
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1609.7 1312 62.7
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1607.0 1310 63.0
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1604.0 1331 62.7
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1588.9 1295 62.5
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1587.8 1294 62.4
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1579.3 1298 62.2
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1575.8 1298 62.3
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1574.3 1298 63.3
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1573.9 1359 60.0
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1571.2 1292 63.2
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1570.8 1242 65.1
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1568.1 1298 62.1
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1567.4 1290 61.2
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1567.0 1291 63.0
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1565.8 1291 62.8
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1563.9 1292 61.8
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1563.1 1297 61.9
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1560.4 1294 61.9
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1558.5 1298 61.6
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1556.6 1296 61.7
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1551.6 1422 58.7
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1550.8 1296 61.7
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1549.6 1389 58.1
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1546.6 1298 61.6
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1543.1 1308 61.1
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1542.3 1293 60.8
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1533.1 1296 61.2
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1530.8 1192 65.7
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1521.1 1315 60.0
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1518.1 1313 59.9
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1508.8 1306 60.3
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1507.7 1299 58.9
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1505.0 1298 59.1
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1497.3 1291 59.6
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1488.8 1113 68.2
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1488.8 1292 59.7
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1479.5 1298 57.8
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1474.9 1293 57.9
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1467.2 1303 59.1
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1462.2 1298 58.2
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1457.2 1294 57.4
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1452.2 1298 58.2
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1451.4 1298 57.7
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1448.0 1298 57.6
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1447.6 1295 58.1
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1446.4 1295 56.4
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1443.7 1298 57.5
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1442.9 1294 57.5
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1441.8 1294 57.3
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1439.9 1111 65.9
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1437.2 1296 57.5
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1433.7 1296 57.3
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1429.1 1369 54.7
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1426.8 1295 56.7
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1424.8 1291 56.9
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1419.8 1305 57.3
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1416.7 1287 56.5
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1416.4 1315 56.9
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1416.4 1299 58.0
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1415.6 1315 55.5
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1411.4 1305 57.0
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1406.0 1073 65.1
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1388.2 1097 64.4
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1375.5 1293 55.5
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1375.1 1156 60.6
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1373.6 1394 54.2
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1372.5 1293 54.2
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1363.2 1270 55.7
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1354.7 1290 55.0
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1343.6 1302 54.7
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1323.9 1112 59.7
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1318.5 1297 54.3
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1300.8 1293 52.6
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1296.6 1327 51.8
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1296.2 1276 52.3
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1290.4 1124 61.2
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1280.0 1161 59.3
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1279.6 1084 61.3
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1262.3 1293 50.4
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1244.2 1286 51.4
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1241.9 1205 55.4
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1211.8 1301 50.9
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1141.3 1397 46.9
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 1.3e-268 930.6 1352 40.2
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 2.5e-264 916.4 1365 39.7
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 4.7e-263 912.1 927 52.4
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.5e-261 907.1 647 68.6
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.3e-252 877.5 846 55.6
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 4.4e-245 852.4 753 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 1.7e-244 850.5 1111 41.5
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 8.4e-212 741.9 923 45.5
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 9.0e-206 721.8 1290 35.7
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 4.1e-166 590.1 571 53.4
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 2.8e-159 567.4 378 75.4
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.1e-154 551.2 658 46.2
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 5.7e-152 543.1 505 60.6
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 5.0e-148 530.0 349 75.4
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 2.4e-126 458.0 466 54.3
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 2.5e-115 421.4 339 61.9
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 5.1e-100 370.5 222 77.0
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 7.6e-96 356.7 1079 26.4
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 7.4e-91 340.1 209 78.0
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.2e-88 332.8 208 75.5
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 9.9e-88 329.7 208 75.5
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.4e-86 325.1 412 43.7
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.0e-84 318.2 476 39.7
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 2.0e-80 305.4 1046 25.7
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 2.8e-66 258.5 293 46.4
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.4e-65 255.4 158 72.8
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.0e-60 240.0 146 71.9
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.7e-59 233.4 189 57.1
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.2e-56 226.5 717 27.5
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.2e-48 199.9 218 45.4
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 4.5e-48 198.0 982 22.5
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.7e-45 188.7 143 65.7
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 8.0e-45 187.2 166 55.4
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.1e-38 166.8 121 64.5
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.0e-36 158.3 207 43.5
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.5e-35 156.4 109 69.7
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 2.6e-35 155.6 119 63.0
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.7e-34 152.9 116 75.0
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.4e-33 147.9 122 54.1
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 1.3e-31 143.3 146 51.4
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 6.5e-31 141.0 151 53.0
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 2.5e-30 139.0 179 45.3
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 4.2e-30 138.3 386 30.3
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 4.7e-29 134.8 113 71.7
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.7e-23 116.3 88 63.6
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.1e-22 113.6 207 35.3
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 1.8e-20 106.3 85 62.4
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.2e-18 99.4 88 55.7
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 2.2e-18 99.4 68 64.7
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 8.3e-18 97.4 237 30.4
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 3.3e-14 85.5 208 33.2
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 4.3e-14 85.1 57 66.7
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 1.1e-12 80.5 66 53.0
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 1.8e-12 79.7 127 44.1
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 3.7e-10 72.0 78 48.7
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 1.7e-07 63.2 41 68.3
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 3.0e-07 62.4 81 61.7
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 5.0e-07 61.6 45 68.9
Lsat_1_v5_gn_5_177961 Lactuca sativa HOM05D004363 ORTHO05D005110 6.6e-07 61.2 73 47.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 4.3e-06 58.5 73 60.3


User provided reference genes

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