Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 8.9e-215 750.0 374 100.0
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 7.0e-127 458.0 362 63.8
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 1.7e-125 453.4 343 65.6
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 9.5e-124 447.6 353 63.5
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.5e-121 440.3 342 62.9
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 5.8e-121 438.3 334 63.8
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 9.8e-121 437.6 333 62.2
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 2.2e-120 436.4 342 64.3
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 1.1e-119 434.1 360 58.9
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 2.4e-119 433.0 336 60.7
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 4.1e-119 432.2 334 62.9
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 9.2e-119 431.0 338 62.1
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 2.0e-118 429.9 342 61.4
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.7e-118 429.5 319 64.3
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 3.5e-118 429.1 342 63.2
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 2.3e-117 426.4 341 61.6
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.1e-116 424.1 364 58.8
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.9e-116 423.3 314 65.0
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 1.9e-116 423.3 335 63.0
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 3.3e-116 422.5 335 60.9
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 3.3e-116 422.5 318 62.6
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.2e-115 420.6 334 61.1
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 1.2e-115 420.6 366 58.5
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 1.6e-115 420.2 336 60.7
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 3.6e-115 419.1 335 60.9
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.6e-115 419.1 366 56.8
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 4.7e-115 418.7 333 59.5
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.3e-114 416.4 326 60.7
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 5.2e-114 415.2 365 58.9
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.5e-113 413.7 368 57.1
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 2.0e-113 413.3 307 63.8
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 2.0e-113 413.3 306 64.1
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 7.5e-113 411.4 340 59.7
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 2.2e-112 409.8 322 59.6
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 2.9e-112 409.5 370 54.1
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 8.3e-112 407.9 335 59.1
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 8.3e-112 407.9 307 61.9
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 3.2e-111 406.0 320 59.1
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 7.0e-111 404.8 384 55.2
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 9.2e-111 404.4 335 58.5
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 1.2e-110 404.1 331 58.0
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 1.2e-110 404.1 308 62.0
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 2.1e-110 403.3 339 59.9
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 4.6e-110 402.1 343 58.0
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 1.7e-109 400.2 308 61.4
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 3.0e-109 399.4 371 53.1
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 5.1e-109 398.7 315 61.3
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 1.1e-108 397.5 335 56.7
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 5.6e-108 395.2 356 54.8
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 5.6e-108 395.2 336 57.7
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 9.5e-108 394.4 369 54.7
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 1.6e-107 393.7 335 57.9
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 1.6e-107 393.7 370 53.2
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 2.1e-107 393.3 378 52.9
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 2.8e-107 392.9 336 57.4
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 4.7e-107 392.1 373 52.0
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 8.1e-107 391.3 332 57.8
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 8.1e-107 391.3 343 54.5
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 1.1e-106 391.0 356 57.6
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 2.3e-106 389.8 343 55.1
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 3.1e-106 389.4 375 52.8
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 5.2e-106 388.7 338 55.3
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 6.8e-106 388.3 368 53.3
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 6.8e-106 388.3 358 54.2
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 1.2e-105 387.5 326 57.7
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 2.0e-105 386.7 358 53.9
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 4.4e-105 385.6 347 53.6
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 5.8e-105 385.2 347 53.6
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 7.5e-105 384.8 327 57.5
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 8.3e-104 381.3 326 55.8
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 2.4e-103 379.8 375 52.5
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.2e-102 377.5 360 51.7
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 1.2e-102 377.5 355 52.7
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 2.7e-102 376.3 326 54.9
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 2.7e-102 376.3 344 52.3
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 1.0e-101 374.4 336 55.1
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 1.3e-101 374.0 336 55.4
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 3.9e-101 372.5 369 53.4
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 5.1e-101 372.1 336 55.1
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 8.6e-101 371.3 323 53.9
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.5e-100 370.5 306 56.9
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 3.3e-100 369.4 379 52.2
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 5.6e-100 368.6 336 54.8
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 7.3e-100 368.2 366 51.6
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.8e-99 366.3 327 54.1
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 3.6e-99 365.9 342 53.2
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 5.2e-98 362.1 334 56.0
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 1.2e-97 360.9 268 62.7
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 2.6e-97 359.8 248 67.7
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 4.4e-97 359.0 314 54.8
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 9.9e-97 357.8 315 54.3
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.3e-96 357.5 329 52.3
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 1.7e-96 357.1 331 51.7
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 2.2e-96 356.7 336 56.2
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 4.9e-96 355.5 359 49.0
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 1.9e-95 353.6 334 55.1
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 7.1e-95 351.7 334 53.0
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 2.7e-94 349.7 317 53.6
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.6e-94 349.0 359 49.9
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 7.8e-94 348.2 355 49.3
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.7e-93 347.1 299 54.2
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 5.6e-92 342.0 307 53.4
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 9.6e-92 341.3 339 53.1
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 1.2e-91 340.9 372 50.3
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 1.6e-91 340.5 348 49.7
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 1.6e-91 340.5 348 48.6
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 2.8e-91 339.7 370 49.7
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 6.2e-91 338.6 309 55.0
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 1.4e-90 337.4 333 50.2
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 5.3e-90 335.5 366 49.7
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 1.5e-89 334.0 283 53.4
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 1.5e-89 334.0 321 52.3
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 4.4e-89 332.4 360 48.6
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 1.3e-88 330.9 333 50.2
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 1.7e-88 330.5 376 47.1
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 2.2e-88 330.1 349 49.9
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 1.1e-87 327.8 359 47.6
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 1.9e-87 327.0 330 50.3
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 3.2e-87 326.2 326 50.6
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 5.4e-87 325.5 365 48.2
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 2.1e-86 323.6 361 47.6
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 2.3e-85 320.1 293 53.2
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.3e-85 320.1 355 47.3
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.5e-84 317.4 355 47.0
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 1.5e-84 317.4 378 43.9
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.5e-84 316.6 355 47.0
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 7.3e-84 315.1 306 52.3
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.4e-82 310.8 333 46.8
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 9.0e-82 308.1 366 44.8
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 3.4e-81 306.2 333 46.8
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 3.4e-81 306.2 333 46.8
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 1.7e-80 303.9 366 44.0
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 2.9e-80 303.1 366 43.7
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 1.9e-79 300.4 241 59.8
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 3.2e-79 299.7 367 44.4
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 7.1e-79 298.5 261 55.2
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 6.0e-78 295.4 348 44.5
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 3.9e-77 292.7 309 47.9
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.4e-74 283.5 289 47.8
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.4e-74 283.5 326 45.1
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 2.6e-73 280.0 326 43.6
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 4.6e-70 269.2 334 43.4
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 6.2e-67 258.8 337 40.9
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 5.3e-66 255.8 320 41.2
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 6.5e-64 248.8 291 44.7
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.5e-63 246.9 320 40.3
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.2e-62 244.6 320 40.3
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 6.7e-61 238.8 261 46.7
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 1.4e-58 231.1 320 40.6
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 3.4e-57 226.5 228 51.8
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 3.4e-57 226.5 334 36.5
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 3.8e-56 223.0 210 50.5
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 5.0e-56 222.6 328 34.5
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.4e-55 221.1 316 37.3
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 9.4e-55 218.4 303 38.6
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 7.9e-54 215.3 280 38.6
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.2e-49 201.4 288 37.2
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.2e-49 201.4 288 37.2
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 3.8e-48 196.4 191 48.2
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.4e-42 177.2 152 53.9
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 2.0e-41 174.1 129 63.6
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 5.0e-40 169.5 133 57.1
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.1e-36 158.3 118 64.4
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 5.9e-33 146.0 118 60.2
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 3.8e-32 143.3 154 47.4
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 6.1e-30 136.0 115 60.0
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.6e-28 130.6 162 39.5
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 4.4e-28 129.8 228 35.1
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 4.1e-26 123.2 80 65.0
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 1.0e-24 118.6 96 60.4
MCO14G045 Micromonas commoda HOM05D000861 ORTHO05D004749 9.8e-20 102.1 176 30.7
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 6.6e-16 89.4 62 62.9
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.5e-15 88.2 86 51.2
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 7.2e-15 85.9 74 56.8
PRCOL_00002048 Prasinoderma coloniale HOM05D000861 ORTHO05D004749 2.3e-13 80.9 182 25.8
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 8.3e-11 72.4 116 38.8


User provided reference genes

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