Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 8.3e-41 169.9 81 100.0
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.0e-39 165.2 81 96.3
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.5e-39 164.1 81 96.3
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 9.8e-34 146.4 72 94.4
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 6.1e-28 127.1 81 71.6
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 8.0e-28 126.7 79 73.4
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 8.0e-28 126.7 81 71.6
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 1.0e-27 126.3 81 67.9
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 3.0e-27 124.8 81 70.4
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.0e-27 124.8 81 71.6
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 8.9e-27 123.2 81 70.4
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 8.9e-27 123.2 81 67.9
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 1.2e-26 122.9 81 67.9
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.0e-26 122.1 79 70.9
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 2.0e-26 122.1 81 66.7
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 2.6e-26 121.7 81 69.1
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 3.4e-26 121.3 81 65.4
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 3.4e-26 121.3 79 69.6
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 4.4e-26 120.9 81 69.1
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 4.4e-26 120.9 80 68.8
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 5.7e-26 120.6 81 66.7
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.3e-25 119.4 79 69.6
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 1.3e-25 119.4 83 65.1
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 1.3e-25 119.4 81 69.1
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.7e-25 119.0 81 67.9
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.7e-25 119.0 82 67.1
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 2.2e-25 118.6 81 67.9
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 2.2e-25 118.6 79 67.1
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 2.2e-25 118.6 81 65.4
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 2.2e-25 118.6 80 66.2
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.9e-25 118.2 79 69.6
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.9e-25 118.2 81 70.4
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.9e-25 118.2 81 67.9
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 2.9e-25 118.2 79 67.1
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 3.7e-25 117.9 81 65.4
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 4.9e-25 117.5 81 65.4
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 6.4e-25 117.1 81 60.5
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 6.4e-25 117.1 81 65.4
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 6.4e-25 117.1 81 69.1
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 8.3e-25 116.7 81 65.4
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.1e-24 116.3 81 66.7
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.1e-24 116.3 82 67.1
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.1e-24 116.3 81 66.7
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.1e-24 116.3 79 65.8
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.1e-24 116.3 81 65.4
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.4e-24 115.9 81 65.4
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.4e-24 115.9 79 65.8
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.8e-24 115.5 81 66.7
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.8e-24 115.5 81 66.7
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 2.4e-24 115.2 81 64.2
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.4e-24 115.2 81 65.4
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 3.2e-24 114.8 81 64.2
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 4.1e-24 114.4 81 61.7
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 4.1e-24 114.4 81 65.4
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 4.1e-24 114.4 81 63.0
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 4.1e-24 114.4 81 63.0
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 5.4e-24 114.0 81 63.0
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 5.4e-24 114.0 81 64.2
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 5.4e-24 114.0 72 69.4
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 7.0e-24 113.6 81 64.2
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 7.0e-24 113.6 81 64.2
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.0e-24 113.6 81 65.4
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 7.0e-24 113.6 81 63.0
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 7.0e-24 113.6 81 63.0
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 7.0e-24 113.6 81 64.2
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 7.0e-24 113.6 82 63.4
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.2e-23 112.8 81 61.7
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.2e-23 112.8 81 61.7
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 1.6e-23 112.5 73 71.2
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 4.6e-23 110.9 81 59.3
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 1.0e-22 109.8 81 60.5
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 1.3e-22 109.4 81 63.0
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.3e-22 109.4 79 64.6
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 2.3e-22 108.6 81 59.3
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.0e-22 108.2 81 64.2
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.0e-22 107.5 81 59.3
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 6.6e-22 107.1 81 60.5
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.5e-21 105.9 99 54.5
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 2.5e-21 105.1 81 60.5
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.5e-21 105.1 68 67.6
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 7.3e-21 103.6 79 62.0
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 7.3e-21 103.6 72 63.9
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 9.5e-21 103.2 80 58.8
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 9.5e-21 103.2 80 58.8
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 2.1e-20 102.1 83 59.0
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 3.6e-20 101.3 81 56.8
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 3.6e-20 101.3 66 57.6
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.2e-20 100.5 69 65.2
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 1.1e-19 99.8 76 63.2
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 1.1e-19 99.8 63 68.3
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.4e-19 99.4 81 55.6
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.4e-19 99.4 72 62.5
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 2.3e-19 98.6 81 58.0
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 4.0e-19 97.8 64 73.4
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 4.0e-19 97.8 81 54.3
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 5.2e-19 97.4 81 56.8
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 1.2e-18 96.3 81 54.3
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 1.2e-18 96.3 65 63.1
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.5e-18 95.9 66 63.6
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 2.6e-18 95.1 69 60.9
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 4.4e-18 94.4 65 63.1
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 4.4e-18 94.4 76 56.6
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 7.5e-18 93.6 81 51.9
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.7e-17 92.4 81 51.9
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.7e-17 92.4 65 64.6
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 1.7e-17 92.4 72 55.6
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 2.2e-17 92.0 81 50.6
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 2.2e-17 92.0 81 50.6
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 2.2e-17 92.0 81 50.6
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 2.2e-17 92.0 81 50.6
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 2.9e-17 91.7 79 51.9
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 3.7e-17 91.3 81 50.6
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 4.9e-17 90.9 81 50.6
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 6.4e-17 90.5 81 53.1
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 1.1e-16 89.7 73 56.2
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.1e-16 89.7 81 49.4
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.1e-16 89.7 81 49.4
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.1e-16 89.7 81 46.9
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.1e-16 89.7 66 57.6
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 1.9e-16 89.0 81 49.4
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 1.9e-16 89.0 81 49.4
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.4e-16 88.6 79 49.4
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 2.4e-16 88.6 80 48.8
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.2e-16 88.2 81 48.1
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 5.4e-16 87.4 62 59.7
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 7.0e-16 87.0 81 48.1
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 9.2e-16 86.7 81 48.1
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.2e-15 86.3 81 49.4
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 1.6e-15 85.9 81 46.9
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.6e-15 85.9 80 55.0
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 2.7e-15 85.1 73 47.9
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 3.5e-15 84.7 75 52.0
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.6e-15 84.3 56 64.3
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 6.0e-15 84.0 81 48.1
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 6.0e-15 84.0 56 62.5
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 1.0e-14 83.2 73 52.1
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.7e-14 82.4 81 46.9
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 1.7e-14 82.4 81 46.9
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 1.7e-14 82.4 81 46.9
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.3e-14 82.0 71 50.7
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 2.3e-14 82.0 86 47.7
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 5.0e-14 80.9 78 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 6.6e-14 80.5 78 44.9
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 8.6e-14 80.1 73 47.9
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 8.6e-14 80.1 79 51.9
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.5e-13 79.3 85 47.1
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 7.3e-13 77.0 81 44.4
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.1e-12 75.5 72 45.8
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 8.1e-12 73.6 64 54.7
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 1.1e-11 73.2 46 71.7
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.4e-11 72.8 76 47.4
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.8e-11 72.4 76 51.3
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 6.8e-11 70.5 65 44.6
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 6.8e-11 70.5 51 58.8
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 2.0e-10 68.9 58 51.7
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 3.4e-10 68.2 84 48.8
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 4.4e-10 67.8 62 43.5
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 5.8e-10 67.4 65 43.1
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 2.9e-09 65.1 84 47.6
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-08 60.5 59 47.5
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 9.2e-08 60.1 65 50.8
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.0e-07 57.4 36 69.4
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 5.1e-06 54.3 35 68.6
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 6.6e-06 53.9 43 60.5


User provided reference genes

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