Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 2.4e-115 419.5 325 100.0
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 3.8e-44 183.0 324 50.3
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 4.2e-35 152.9 321 36.1
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 1.2e-34 151.4 326 41.4
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 3.0e-33 146.7 335 41.2
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 2.8e-31 140.2 301 41.2
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 7.7e-29 132.1 334 44.3
Glyma.14G027900 Glycine max HOM05D006785 ORTHO05D006259 2.7e-26 123.6 325 54.2
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 4.6e-26 122.9 326 39.0
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 4.6e-26 122.9 338 38.2
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 3.0e-25 120.2 301 34.2
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 6.7e-25 119.0 334 38.0
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 4.4e-24 116.3 326 45.4
VMungo0647G1995 Vigna mungo HOM05D006785 ORTHO05D006259 4.4e-24 116.3 325 45.2
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 7.4e-24 115.5 214 47.7
Dinv07090 Davidia involucrata HOM05D006785 ORTHO05D006259 9.7e-24 115.2 367 37.3
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 3.7e-23 113.2 206 35.9
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 4.8e-23 112.8 301 36.5
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 2.4e-22 110.5 333 29.1
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 4.1e-22 109.8 325 28.3
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 6.9e-22 109.0 199 50.3
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.5e-21 107.8 214 45.8
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 2.6e-21 107.1 324 33.6
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.9e-20 103.6 177 47.5
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 5.0e-20 102.8 177 46.9
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 6.5e-20 102.4 248 40.7
TAR627G0640 Trochodendron aralioides HOM05D006785 ORTHO05D006259 6.5e-20 102.4 166 41.0
Duzib264G0099 Durio zibethinus HOM05D006785 ORTHO05D006259 8.5e-20 102.1 327 46.5
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.4e-19 101.3 177 45.8
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 2.5e-19 100.5 354 30.5
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 2.5e-19 100.5 354 30.5
MBI10_g42732_MAGBIO Magnolia biondii HOM05D006785 ORTHO05D006259 2.5e-19 100.5 149 41.6
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 5.5e-19 99.4 334 35.9
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 5.5e-19 99.4 342 43.9
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 7.2e-19 99.0 205 33.7
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 7.2e-19 99.0 328 36.0
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 2.1e-18 97.4 301 36.9
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 2.1e-18 97.4 294 35.4
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 2.7e-18 97.1 335 29.6
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 7.9e-18 95.5 328 36.0
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.0e-17 95.1 301 36.5
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 1.0e-17 95.1 292 36.0
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 3.0e-17 93.6 333 27.0
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 3.0e-17 93.6 325 34.2
DCAR_013314 Daucus carota HOM05D006785 ORTHO05D006259 6.7e-17 92.4 337 43.6
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 2.6e-16 90.5 290 29.3
TAR629G3165 Trochodendron aralioides HOM05D006785 ORTHO05D006259 5.7e-16 89.4 145 42.8
TPR.G12660 Trifolium pratense HOM05D006785 ORTHO05D006259 1.3e-15 88.2 324 42.3
Duzib147G0591 Durio zibethinus HOM05D006785 ORTHO05D006259 1.7e-15 87.8 332 44.6
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 2.8e-15 87.0 301 35.2
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 3.7e-15 86.7 328 35.1
Nn3g20927 Nelumbo nucifera HOM05D006785 ORTHO05D006259 3.7e-15 86.7 353 27.2
Actinidia11204 Actinidia chinensis HOM05D006785 ORTHO05D006259 4.8e-15 86.3 117 43.6
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 8.2e-15 85.5 248 37.1
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 2.4e-14 84.0 325 42.2
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 3.1e-14 83.6 332 35.2
Rhsim06G0116700 Rhododendron simsii HOM05D006785 ORTHO05D006259 4.1e-14 83.2 341 37.5
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 1.2e-13 81.6 233 30.5
Sabra02G0048700 Salix brachista HOM05D006785 ORTHO05D006259 2.0e-13 80.9 325 47.1
Psat2g015800 Pisum sativum HOM05D006785 ORTHO05D006259 3.5e-13 80.1 326 41.7
C05p04790 Brassica napus HOM05D006785 ORTHO05D006259 5.9e-13 79.3 161 43.5
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 1.0e-12 78.6 325 34.2
TAR622G1344 Trochodendron aralioides HOM05D006785 ORTHO05D006259 1.0e-12 78.6 114 37.7
ECA233G1175 Erigeron canadensis HOM05D009485 ORTHO05D006259 2.2e-12 77.4 159 35.2
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 3.8e-12 76.6 229 29.7
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 5.0e-12 76.3 229 29.7
Lj1P620T12 Lonicera japonica HOM05D006785 ORTHO05D006259 1.1e-11 75.1 272 38.6
PSO675G6378 Papaver somniferum HOM05D006785 ORTHO05D006259 1.9e-11 74.3 138 36.2
PSO541G2000 Papaver somniferum HOM05D006785 ORTHO05D006259 4.2e-11 73.2 138 36.2
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 5.5e-11 72.8 329 32.8
HanXRQChr08g0227971 Helianthus annuus HOM05D009485 ORTHO05D006259 7.2e-11 72.4 161 34.8
Aa31LG5G5980 Aethionema arabicum HOM05D006785 ORTHO05D006259 2.1e-10 70.9 298 33.6
PSO104G0025 Papaver somniferum HOM05D006785 ORTHO05D006259 2.7e-10 70.5 99 41.4
Aqoxy4G00148 Aquilegia oxysepala HOM05D006785 ORTHO05D006259 6.1e-10 69.3 138 35.5
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 6.1e-10 69.3 324 30.9
Migut.M00503 Erythranthe guttata HOM05D009485 ORTHO05D006259 8.0e-10 68.9 206 29.6
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 8.0e-10 68.9 297 34.0
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 1.0e-09 68.6 298 32.6
MBI07_g07832_MAGBIO Magnolia biondii HOM05D006785 ORTHO05D006259 1.0e-09 68.6 156 30.1
Hma1.2p1_0960F.1_g241635 Hydrangea macrophylla HOM05D006785 ORTHO05D006259 1.4e-09 68.2 106 41.5
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 1.4e-09 68.2 325 32.9
Potri.002G060200 Populus trichocarpa HOM05D006785 ORTHO05D006259 1.8e-09 67.8 325 50.5
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 2.3e-09 67.4 286 28.0
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 4.0e-09 66.6 327 33.9
ATR0568G074 Amborella trichopoda HOM05D006785 ORTHO05D006259 5.2e-09 66.2 235 31.1
CAN.G585.40 Capsicum annuum HOM05D009485 ORTHO05D006259 5.2e-09 66.2 130 36.2
BcaB02g07495 Brassica carinata HOM05D006785 ORTHO05D006259 1.2e-08 65.1 201 40.3
Aa31LG1G7630 Aethionema arabicum HOM05D006785 ORTHO05D006259 2.0e-08 64.3 142 31.0
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 2.6e-08 63.9 107 37.4
Solyc07g056370.3 Solanum lycopersicum HOM05D009485 ORTHO05D006259 2.6e-08 63.9 138 36.2
Nitab4.5_0002027g0170 Nicotiana tabacum HOM05D009485 ORTHO05D006259 3.3e-08 63.5 204 30.4
Sp1g05290 Schrenkiella parvula HOM05D006785 ORTHO05D006259 3.3e-08 63.5 123 42.3
Sopen10g003690 Solanum pennellii HOM05D009485 ORTHO05D006259 3.3e-08 63.5 156 33.3
Oeu036701.1 Olea europaea HOM05D006851 ORTHO05D008844 4.4e-08 63.2 122 34.4
LjContig00310g0014416 Lotus japonicus HOM05D006785 ORTHO05D006259 5.7e-08 62.8 351 36.5
MSTRG.6747 Avicennia marina HOM05D009485 ORTHO05D006259 9.7e-08 62.0 155 32.9
Peaxi162Scf00111g00008 Petunia axillaris HOM05D009485 ORTHO05D006259 9.7e-08 62.0 99 36.4
Lsat_1_v5_gn_6_18081 Lactuca sativa HOM05D009485 ORTHO05D006259 2.8e-07 60.5 130 37.7
AL1G16560 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 3.7e-07 60.1 200 31.0
A07p24380 Brassica napus HOM05D006785 ORTHO05D006259 3.7e-07 60.1 166 45.2
Ciclev10032336m.g Citrus clementina HOM05D006785 ORTHO05D006259 3.7e-07 60.1 276 32.6
Oeu020927.1 Olea europaea HOM05D009485 ORTHO05D006259 4.8e-07 59.7 123 35.0
arahy.Tifrunner.gnm1.ann1.W4MS3F Arachis hypogaea HOM05D006785 ORTHO05D006259 1.1e-06 58.5 298 32.2
Nitab4.5_0001402g0020 Nicotiana tabacum HOM05D009485 ORTHO05D006259 1.4e-06 58.2 204 29.4
BraA07t30085Z Brassica rapa HOM05D006785 ORTHO05D023842 1.8e-06 57.8 142 48.6
Aa31LG10G13400 Aethionema arabicum HOM05D006785 ORTHO05D006259 4.1e-06 56.6 323 37.5
BolC5t29251H Brassica oleracea HOM05D006785 ORTHO05D006259 4.1e-06 56.6 98 30.6
Gohir.A11G224802 Gossypium hirsutum HOM05D006785 ORTHO05D006259 4.1e-06 56.6 185 31.9
Nitab4.5_0001675g0090 Nicotiana tabacum HOM05D009485 ORTHO05D006259 4.1e-06 56.6 126 34.1
unitig_747.g21610 Utricularia gibba HOM05D009485 ORTHO05D006259 4.1e-06 56.6 159 34.0
arahy.Tifrunner.gnm1.ann1.SE4LXZ Arachis hypogaea HOM05D006785 ORTHO05D006259 5.3e-06 56.2 124 45.2
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 9.1e-06 55.5 228 33.8
Sopen07g029750 Solanum pennellii HOM05D009485 ORTHO05D006259 9.1e-06 55.5 157 32.5


User provided reference genes

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