Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 1.8e-226 788.9 387 100.0
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 6.7e-149 531.2 394 65.5
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 7.0e-146 521.2 396 64.9
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 9.1e-146 520.8 382 66.0
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 3.8e-144 515.4 402 62.7
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 5.0e-144 515.0 401 64.1
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 8.5e-144 514.2 380 66.6
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 4.2e-143 511.9 382 66.5
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 7.2e-143 511.1 398 62.3
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.7e-142 509.2 398 62.3
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 8.0e-142 507.7 398 62.1
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 5.2e-141 505.0 378 66.4
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 1.2e-140 503.8 382 67.0
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 2.6e-140 502.7 406 61.6
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 9.8e-140 500.7 401 61.6
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 9.8e-140 500.7 383 63.4
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 1.3e-139 500.4 383 65.0
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 1.3e-139 500.4 383 64.0
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.3e-139 500.4 404 60.4
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.7e-139 500.0 406 60.8
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 1.7e-139 500.0 408 61.3
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 2.2e-139 499.6 388 63.7
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 2.8e-139 499.2 383 64.8
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 3.7e-139 498.8 374 64.4
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 3.7e-139 498.8 384 64.8
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 4.8e-139 498.4 403 61.8
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 1.1e-138 497.3 395 62.3
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 1.1e-138 497.3 383 64.2
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 1.1e-138 497.3 408 62.5
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 1.4e-138 496.9 398 61.3
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 1.4e-138 496.9 373 65.7
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 2.4e-138 496.1 386 63.7
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 4.1e-138 495.4 380 63.4
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 4.1e-138 495.4 396 62.1
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.2e-137 493.8 397 61.2
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.6e-137 493.4 393 61.3
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 4.5e-137 491.9 394 61.9
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 7.7e-137 491.1 374 62.0
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 1.7e-136 490.0 377 63.4
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 2.9e-136 489.2 397 61.5
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 3.8e-136 488.8 377 63.1
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 5.0e-136 488.4 396 61.6
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 6.6e-136 488.0 383 62.1
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 1.1e-135 487.3 381 63.3
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 1.5e-135 486.9 375 64.8
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 1.5e-135 486.9 381 63.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.9e-135 486.5 364 66.2
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 1.9e-135 486.5 339 71.1
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 1.9e-135 486.5 396 61.1
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.5e-135 486.1 376 64.6
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 2.5e-135 486.1 395 62.0
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 2.5e-135 486.1 396 61.1
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 3.3e-135 485.7 428 57.9
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 5.5e-135 485.0 439 56.9
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 5.5e-135 485.0 394 61.2
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 5.5e-135 485.0 398 60.8
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 7.2e-135 484.6 332 70.2
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 9.5e-135 484.2 395 62.0
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 9.5e-135 484.2 380 61.3
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 1.6e-134 483.4 417 58.8
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 2.8e-134 482.6 397 61.2
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 3.6e-134 482.3 391 62.7
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 4.7e-134 481.9 395 61.8
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 6.1e-134 481.5 427 57.4
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 8.0e-134 481.1 398 60.6
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 1.0e-133 480.7 356 67.7
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.0e-133 480.7 414 58.9
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 1.4e-133 480.3 398 60.3
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 1.4e-133 480.3 383 62.4
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 2.3e-133 479.6 397 59.7
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 2.3e-133 479.6 397 59.7
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 3.0e-133 479.2 378 60.6
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 4.0e-133 478.8 401 60.6
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 6.8e-133 478.0 404 59.7
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 6.8e-133 478.0 392 61.0
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 6.8e-133 478.0 397 59.9
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 6.8e-133 478.0 396 60.1
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 8.9e-133 477.6 317 71.6
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 8.9e-133 477.6 380 61.1
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 8.9e-133 477.6 380 61.1
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 1.2e-132 477.2 396 59.8
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.5e-132 476.9 398 60.1
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 2.6e-132 476.1 383 61.4
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 3.4e-132 475.7 383 61.4
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 4.4e-132 475.3 396 59.3
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 4.4e-132 475.3 396 59.3
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 7.5e-132 474.6 400 59.8
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 7.5e-132 474.6 400 59.8
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 9.8e-132 474.2 335 70.7
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 4.9e-131 471.9 400 59.5
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 1.4e-130 470.3 400 59.0
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 1.8e-130 469.9 406 56.7
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 2.4e-130 469.5 383 60.6
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 1.2e-129 467.2 383 60.3
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 1.6e-129 466.8 353 64.6
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 2.0e-129 466.5 388 59.5
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 2.7e-129 466.1 330 68.8
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 3.5e-129 465.7 384 59.4
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 1.7e-128 463.4 425 55.5
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 2.9e-128 462.6 384 59.1
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 3.8e-128 462.2 344 63.7
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 6.6e-128 461.5 383 60.1
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 3.3e-127 459.1 367 62.4
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 3.3e-127 459.1 328 66.8
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 5.6e-127 458.4 384 58.3
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 7.3e-127 458.0 379 59.4
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 9.5e-127 457.6 449 54.1
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.2e-126 457.2 326 66.3
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 2.1e-126 456.4 385 60.8
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.8e-126 456.1 326 68.7
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 3.0e-125 452.6 346 65.6
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 2.0e-124 449.9 377 58.6
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 7.5e-124 448.0 311 67.5
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 1.7e-123 446.8 399 55.6
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 8.3e-123 444.5 389 57.6
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.2e-122 442.6 328 62.8
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 1.2e-121 440.7 395 54.9
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 1.7e-120 436.8 401 57.9
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 5.0e-120 435.3 403 55.1
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.1e-118 429.9 317 67.2
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 2.0e-116 423.3 398 54.5
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 2.6e-116 422.9 344 59.9
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 6.4e-115 418.3 383 53.8
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 6.0e-113 411.8 287 70.7
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 9.5e-111 404.4 380 54.2
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 1.2e-105 387.5 291 62.5
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 1.8e-93 347.1 358 48.9
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 1.6e-89 334.0 328 49.1
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 1.1e-85 321.2 313 50.8
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 4.9e-83 312.4 196 75.0
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 3.9e-80 302.8 348 43.7
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 2.1e-78 297.0 272 57.0
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 2.4e-77 293.5 343 45.5
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 3.0e-72 276.6 220 60.0
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 8.7e-72 275.0 270 51.5
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 2.5e-71 273.5 273 53.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.6e-65 254.2 338 44.4
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.9e-63 247.3 222 60.4
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 1.1e-45 188.3 275 40.0
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 7.2e-42 175.6 191 49.2
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 8.0e-41 172.2 167 51.5
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 2.8e-38 163.7 125 54.4
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 4.1e-37 159.8 308 34.1
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 1.4e-32 144.8 319 31.0
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 3.7e-22 110.2 103 57.3
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 6.3e-22 109.4 61 82.0
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 2.4e-21 107.5 88 60.2
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 4.1e-21 106.7 79 62.0
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 7.7e-20 102.4 59 74.6
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.6e-17 93.6 81 59.3
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 6.8e-16 89.4 68 61.8
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 8.9e-16 89.0 61 65.6
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 4.4e-15 86.7 69 55.1
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 2.8e-14 84.0 127 40.2
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 2.7e-12 77.4 120 41.7
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 7.3e-10 69.3 50 62.0
Gohir.A11G181000 Gossypium hirsutum HOM05D000363 ORTHO05D000236 3.6e-09 67.0 331 26.0
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 3.6e-09 67.0 68 55.9
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 8.0e-09 65.9 120 37.5
Mapoly0001s0421 Marchantia polymorpha HOM05D000363 ORTHO05D000236 5.2e-08 63.2 330 22.1
Dinv23483 Davidia involucrata HOM05D000363 ORTHO05D000236 8.9e-08 62.4 129 37.2
Gohir.D11G187500 Gossypium hirsutum HOM05D000363 ORTHO05D000236 2.6e-07 60.8 327 26.3
Gorai.007G199400 Gossypium raimondii HOM05D000363 ORTHO05D000236 2.6e-07 60.8 327 26.3
CDE09G0813 Ceratophyllum demersum HOM05D000363 ORTHO05D005067 3.4e-07 60.5 129 33.3
Haze_27343 Corylus avellana HOM05D000363 ORTHO05D000236 1.3e-06 58.5 131 32.8
Cc07_g10120 Coffea canephora HOM05D000363 ORTHO05D000236 1.7e-06 58.2 317 25.9
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 2.2e-06 57.8 129 32.6
Medtr5g072260 Medicago truncatula HOM05D036032 ORTHO05D260814 2.2e-06 57.8 85 43.5
PSO170G0253 Papaver somniferum HOM05D000363 ORTHO05D000236 2.2e-06 57.8 320 20.0
PGR142G3523 Punica granatum HOM05D000363 ORTHO05D000236 2.2e-06 57.8 129 34.1
HPP92_013728 Vanilla planifolia HOM05D000363 ORTHO05D000236 6.4e-06 56.2 129 33.3


User provided reference genes

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