Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 0.0e+00 1112.4 563 100.0
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 4.0e-243 844.7 572 73.6
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.5e-242 842.8 565 73.3
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.3e-241 839.7 564 75.5
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 3.2e-240 835.1 568 73.6
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 5.4e-240 834.3 567 73.0
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.5e-239 831.6 565 73.1
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 6.0e-239 830.9 567 73.9
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 5.1e-238 827.8 574 72.6
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.9e-237 825.9 565 72.7
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 5.6e-237 824.3 565 71.9
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 2.8e-236 822.0 562 72.8
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 4.7e-236 821.2 561 71.7
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 4.7e-236 821.2 565 71.5
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 8.1e-236 820.5 564 72.5
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 8.1e-236 820.5 567 70.2
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 6.9e-235 817.4 565 70.6
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 6.9e-235 817.4 565 71.2
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.0e-234 815.8 564 71.6
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 2.6e-234 815.5 567 72.1
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 5.8e-234 814.3 568 71.0
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 9.9e-234 813.5 565 71.9
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.3e-233 813.1 566 72.3
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 8.4e-233 810.4 565 70.6
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.4e-232 808.9 564 71.1
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 9.3e-232 807.0 563 70.9
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.6e-231 806.2 564 72.3
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 6.0e-231 804.3 567 71.1
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.0e-230 803.5 568 70.2
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 6.6e-230 800.8 564 69.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.5e-229 799.7 572 70.8
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 5.6e-229 797.7 569 70.7
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 9.6e-229 797.0 563 70.3
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 9.6e-229 797.0 563 70.3
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 4.8e-228 794.7 565 68.3
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.4e-227 793.1 563 70.3
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 1.8e-227 792.7 550 72.5
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 9.0e-227 790.4 568 71.3
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.6e-226 788.9 559 70.1
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 4.5e-226 788.1 563 67.3
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 2.2e-225 785.8 562 69.8
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.4e-224 782.3 641 62.9
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.6e-223 779.6 561 68.6
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.6e-223 779.6 562 66.2
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.3e-222 775.8 567 69.7
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 3.9e-222 775.0 564 65.8
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 6.7e-222 774.2 567 68.8
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 8.7e-222 773.9 548 71.5
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 8.7e-222 773.9 565 69.4
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 3.3e-221 771.9 567 68.6
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 7.4e-221 770.8 568 68.7
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 9.6e-221 770.4 569 66.8
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 6.2e-220 767.7 561 65.8
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 8.1e-220 767.3 566 67.0
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 8.1e-220 767.3 567 68.3
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.1e-219 766.9 562 65.1
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.1e-219 766.9 568 68.7
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 4.0e-219 765.0 569 67.1
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.6e-218 762.3 565 65.3
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.6e-218 762.3 568 67.6
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 4.5e-218 761.5 565 65.1
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 5.8e-218 761.1 562 64.4
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 1.7e-217 759.6 565 65.0
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 2.9e-217 758.8 562 64.8
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.9e-217 758.8 561 67.0
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 3.8e-217 758.4 565 65.0
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 9.3e-216 753.8 568 67.6
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 1.2e-215 753.4 566 64.5
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.1e-215 752.7 563 66.3
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.7e-215 752.3 563 65.4
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 1.8e-214 749.6 564 66.5
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 1.8e-214 749.6 564 66.5
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 9.6e-213 743.8 693 56.6
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 1.8e-211 739.6 546 68.5
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.5e-210 736.5 563 64.8
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.5e-210 736.5 558 66.7
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 2.0e-210 736.1 561 64.5
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 4.9e-209 731.5 560 63.8
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 4.9e-209 731.5 563 67.3
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 4.2e-208 728.4 570 65.6
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 6.0e-207 724.5 557 64.8
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.9e-206 721.8 569 64.3
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 6.7e-206 721.1 571 63.7
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 2.0e-202 709.5 527 68.3
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 5.0e-201 704.9 501 71.7
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 5.0e-201 704.9 563 63.8
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 2.5e-197 692.6 550 63.1
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 4.5e-186 655.2 562 60.3
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.5e-176 622.9 566 57.8
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 2.6e-173 612.8 589 54.8
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 4.4e-173 612.1 528 59.7
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.5e-165 587.0 496 61.9
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.6e-162 577.0 564 55.3
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 7.2e-160 568.2 628 49.2
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 9.5e-160 567.8 598 52.5
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 4.5e-154 548.9 505 55.4
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 4.7e-151 538.9 388 67.8
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.8e-150 537.0 358 72.6
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 2.6e-149 533.1 382 68.8
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 2.4e-118 430.3 389 59.9
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 4.4e-117 426.0 435 52.6
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 4.9e-116 422.5 257 80.2
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 3.5e-114 416.4 257 80.5
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 3.0e-113 413.3 311 67.2
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 9.3e-107 391.7 311 64.6
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.8e-105 387.5 256 73.8
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 4.9e-100 369.4 593 39.1
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 4.2e-99 366.3 244 71.3
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 4.1e-94 349.7 231 74.9
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 6.1e-82 309.3 272 58.5
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 7.7e-77 292.4 579 35.1
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 6.7e-65 252.7 219 58.9
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 2.4e-62 244.2 235 55.3
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 8.8e-57 225.7 130 78.5
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 4.4e-56 223.4 169 68.6
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.4e-49 201.8 158 64.6
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.3e-49 201.1 111 86.5
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-47 194.9 111 85.6
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-45 188.7 111 82.0
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-44 184.5 110 78.2
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 6.6e-44 183.0 110 78.2
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-42 178.7 109 76.1
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-38 165.2 123 68.3
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 5.0e-36 156.8 99 76.8
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 1.2e-34 152.1 99 72.7
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-33 148.3 125 58.4
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 6.4e-31 139.8 525 26.7
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-29 134.8 87 72.4
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-27 129.0 125 54.4
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.5e-27 128.6 134 54.5
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 2.8e-26 124.4 69 88.4
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-21 108.2 68 73.5
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 6.0e-21 106.7 66 75.8
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 5.4e-14 83.6 49 69.4
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.7e-13 81.3 142 39.4
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 4.6e-13 80.5 51 66.7
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 4.6e-13 80.5 51 66.7
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 8.6e-12 76.3 50 72.0
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 1.5e-11 75.5 41 90.2
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 5.6e-11 73.6 40 85.0
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 9.6e-11 72.8 41 78.0
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 5.2e-09 67.0 41 70.7
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 3.8e-07 60.8 133 30.8
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-06 58.5 46 58.7
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.4e-06 58.2 33 75.8
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 3.2e-06 57.8 133 30.1
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 4.2e-06 57.4 133 30.1
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 5.4e-06 57.0 133 30.1
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 5.4e-06 57.0 133 29.3
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 5.4e-06 57.0 133 29.3
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 7.1e-06 56.6 133 29.3
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 7.1e-06 56.6 133 30.1
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 7.1e-06 56.6 133 29.3
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 9.3e-06 56.2 133 29.3
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 9.3e-06 56.2 133 29.3
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 9.3e-06 56.2 133 30.1
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 9.3e-06 56.2 133 30.1


User provided reference genes

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