Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01314 Eucalyptus grandis HOM05D002282 ORTHO05D002403 3.3e-39 164.5 77 100.0
Eucgr.A01301 Eucalyptus grandis HOM05D002282 ORTHO05D002403 1.6e-33 145.6 75 89.3
RcHm_v2.0_Chr4g0423831 Rosa chinensis HOM05D002282 ORTHO05D002403 7.4e-23 110.2 74 66.2
GSVIVG01035079001 Vitis vinifera HOM05D002282 ORTHO05D002403 9.6e-23 109.8 76 63.2
MD16G1161700 Malus domestica HOM05D002282 ORTHO05D002403 2.1e-22 108.6 75 69.3
MD13G1161900 Malus domestica HOM05D002282 ORTHO05D002403 2.8e-22 108.2 77 66.2
CiPaw.01G144200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.1e-21 106.3 76 69.7
FvH4_6g31810 Fragaria vesca HOM05D002282 ORTHO05D002403 1.1e-21 106.3 74 64.9
FAN02G0515 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.4e-21 105.9 74 64.9
FAN14G3556 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.4e-21 105.9 74 64.9
FAN05G0042 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.4e-21 105.1 74 63.5
FAN09G1184 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.4e-21 105.1 74 63.5
arahy.Tifrunner.gnm1.ann1.3PI56D Arachis hypogaea HOM05D002282 ORTHO05D002403 3.1e-21 104.8 76 64.5
arahy.Tifrunner.gnm1.ann1.C0TKG5 Arachis hypogaea HOM05D002282 ORTHO05D002403 3.1e-21 104.8 76 64.5
Cpa.g.sc9.113 Carica papaya HOM05D002282 ORTHO05D002403 3.1e-21 104.8 75 64.0
Cfa015451 Carpinus fangiana HOM05D002282 ORTHO05D002403 5.3e-21 104.0 76 69.7
Cfa006257 Carpinus fangiana HOM05D002282 ORTHO05D004557 6.9e-21 103.6 76 69.7
Haze_01137 Corylus avellana HOM05D002282 ORTHO05D002403 6.9e-21 103.6 76 69.7
Lj4g0005439 Lotus japonicus HOM05D002282 ORTHO05D002403 1.5e-20 102.4 76 63.2
Lj4g0022588 Lotus japonicus HOM05D002282 ORTHO05D002403 1.5e-20 102.4 76 63.2
QL06p010943 Quercus lobata HOM05D002282 ORTHO05D002403 1.5e-20 102.4 76 65.8
vmacro13795 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 2.0e-20 102.1 76 60.5
Haze_04567 Corylus avellana HOM05D002282 ORTHO05D002403 2.6e-20 101.7 76 69.7
Glyma.07G244100 Glycine max HOM05D002282 ORTHO05D002403 2.6e-20 101.7 76 61.8
Rhsim02G0006600 Rhododendron simsii HOM05D002282 ORTHO05D002403 7.6e-20 100.1 76 61.8
Actinidia13377 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.3e-19 99.4 75 58.7
CSS0020497 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.7e-19 99.0 76 59.2
TAR365G0623 Trochodendron aralioides HOM05D002282 ORTHO05D002403 1.7e-19 99.0 76 59.2
Glyma.17G029800 Glycine max HOM05D002282 ORTHO05D002403 3.8e-19 97.8 76 59.2
Psat4g024880 Pisum sativum HOM05D002282 ORTHO05D002403 3.8e-19 97.8 76 60.5
Atru.chr4.2932 Acer truncatum HOM05D002282 ORTHO05D002403 6.5e-19 97.1 75 61.3
DCAR_027041 Daucus carota HOM05D002282 ORTHO05D002403 6.5e-19 97.1 75 58.7
Gohir.D09G062700 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.1e-18 96.3 76 57.9
Gorai.006G077500 Gossypium raimondii HOM05D002282 ORTHO05D002403 1.1e-18 96.3 76 57.9
COL.COLO4_34694 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.4e-18 95.9 76 56.6
vmacro02293 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.4e-18 95.9 76 56.6
Dinv29708 Davidia involucrata HOM05D002282 ORTHO05D002403 1.9e-18 95.5 76 56.6
Gohir.A09G063800 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.9e-18 95.5 76 57.9
Medtr4g120740 Medicago truncatula HOM05D002282 ORTHO05D002403 1.9e-18 95.5 75 58.7
Actinidia02885 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.5e-18 95.1 75 56.0
Actinidia14272 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.5e-18 95.1 75 56.0
TPR.G4827 Trifolium pratense HOM05D002282 ORTHO05D002403 2.5e-18 95.1 76 56.6
CANSAT35G1122 Cannabis sativa HOM05D002282 ORTHO05D002403 4.2e-18 94.4 76 55.3
Hund11944 Selenicereus undatus HOM05D002282 ORTHO05D002403 4.2e-18 94.4 76 56.6
VMungo1215G3370 Vigna mungo HOM05D002282 ORTHO05D002403 4.2e-18 94.4 76 56.6
Ca_21469_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 5.5e-18 94.0 76 56.6
Prupe.1G129200 Prunus persica HOM05D002282 ORTHO05D002403 5.5e-18 94.0 74 58.1
Thecc.04G291300 Theobroma cacao HOM05D002282 ORTHO05D002403 2.7e-17 91.7 76 55.3
Ciclev10004544m.g Citrus clementina HOM05D002282 ORTHO05D002403 3.6e-17 91.3 76 59.2
Migut.G00119 Erythranthe guttata HOM05D002282 ORTHO05D002403 3.6e-17 91.3 76 52.6
Thhalv10012983m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 3.6e-17 91.3 76 56.6
Potri.010G005400 Populus trichocarpa HOM05D002282 ORTHO05D002403 3.6e-17 91.3 76 57.9
Sp6g32320 Schrenkiella parvula HOM05D002282 ORTHO05D002403 3.6e-17 91.3 76 55.3
THA.LOC104805829 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 3.6e-17 91.3 76 61.8
Phvul.003G108800 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 4.6e-17 90.9 76 55.3
MBI19_g05149_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 7.9e-17 90.1 75 58.7
A02p00910 Brassica napus HOM05D002282 ORTHO05D002403 1.0e-16 89.7 77 57.1
Sc19g0003390 Simmondsia chinensis HOM05D002282 ORTHO05D002403 1.0e-16 89.7 76 48.7
Aqoxy7G01538 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 3.0e-16 88.2 76 52.6
Carub.0006s0971 Capsella rubella HOM05D002282 ORTHO05D002403 3.0e-16 88.2 76 55.3
A10p26480 Brassica napus HOM05D002282 ORTHO05D002403 3.9e-16 87.8 77 55.8
BraA10t44705Z Brassica rapa HOM05D002282 ORTHO05D002403 3.9e-16 87.8 77 55.8
Sabra10G0004600 Salix brachista HOM05D002282 ORTHO05D002403 3.9e-16 87.8 76 56.6
AL6G21870 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 5.1e-16 87.4 76 53.9
Oeu006431.1 Olea europaea HOM05D002282 ORTHO05D002403 5.1e-16 87.4 76 50.0
BcaNung01920 Brassica carinata HOM05D002282 ORTHO05D002403 1.9e-15 85.5 76 53.9
PSO407G0173 Papaver somniferum HOM05D002282 ORTHO05D002403 1.9e-15 85.5 76 48.7
Lalb_Chr12g0201081 Lupinus albus HOM05D002282 ORTHO05D002403 2.5e-15 85.1 76 55.3
BraA02t05075Z Brassica rapa HOM05D002282 ORTHO05D002403 3.3e-15 84.7 77 53.2
TWI09G1448 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 4.3e-15 84.3 76 55.3
BcaB08g37077 Brassica carinata HOM05D002282 ORTHO05D002403 7.4e-15 83.6 77 54.5
BcaC04g19248 Brassica carinata HOM05D002282 ORTHO05D002403 7.4e-15 83.6 77 53.2
C09p65630 Brassica napus HOM05D002282 ORTHO05D002403 7.4e-15 83.6 77 53.2
BolC9t59386H Brassica oleracea HOM05D002282 ORTHO05D002403 7.4e-15 83.6 77 53.2
Lj5A688G9 Lonicera japonica HOM05D002282 ORTHO05D002403 7.4e-15 83.6 77 54.5
AT5G11240 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 1.3e-14 82.8 76 51.3
AUR62016160 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.3e-14 82.8 74 50.0
EL10Ac3g04935 Beta vulgaris HOM05D002282 ORTHO05D002403 2.2e-14 82.0 76 47.4
Lj3A826G75 Lonicera japonica HOM05D002282 ORTHO05D002403 2.8e-14 81.6 76 53.9
PGR031G2323 Punica granatum HOM05D002282 ORTHO05D002403 3.7e-14 81.3 76 52.6
Cc03_g01330 Coffea canephora HOM05D002282 ORTHO05D002403 4.8e-14 80.9 76 46.1
PSO170G5250 Papaver somniferum HOM05D002282 ORTHO05D002403 4.8e-14 80.9 75 46.7
Duzib052G0572 Durio zibethinus HOM05D002282 ORTHO05D002403 6.3e-14 80.5 64 50.0
Manes.15G008900 Manihot esculenta HOM05D002282 ORTHO05D002403 6.3e-14 80.5 76 56.6
MSTRG.10121 Avicennia marina HOM05D002282 ORTHO05D002403 8.2e-14 80.1 76 47.4
MSTRG.21910 Avicennia marina HOM05D002282 ORTHO05D002403 8.2e-14 80.1 76 47.4
ECA240G0914 Erigeron canadensis HOM05D002282 ORTHO05D002403 8.2e-14 80.1 76 55.3
CsaV3_6G022650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.1e-13 79.7 76 48.7
Sed0017061 Sechium edule HOM05D002282 ORTHO05D002403 1.4e-13 79.3 76 52.6
MELO3C021295.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.4e-13 78.6 76 51.3
Peaxi162Scf00065g01016 Petunia axillaris HOM05D002282 ORTHO05D002403 2.4e-13 78.6 76 48.7
Ah.04g155130 Amaranthus hybridus HOM05D002282 ORTHO05D002403 3.1e-13 78.2 76 44.7
Aa31LG3G15950 Aethionema arabicum HOM05D002282 ORTHO05D002403 5.3e-13 77.4 76 51.3
CAN.G306.6 Capsicum annuum HOM05D002282 ORTHO05D002403 5.3e-13 77.4 76 44.7
HanXRQChr03g0084951 Helianthus annuus HOM05D002282 ORTHO05D002403 5.3e-13 77.4 76 48.7
Nn8g40612 Nelumbo nucifera HOM05D002282 ORTHO05D002403 5.3e-13 77.4 75 46.7
SGA_v2.0_scaffold146G36232 Striga asiatica HOM05D002282 ORTHO05D002403 5.3e-13 77.4 76 50.0
AUR62035074 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.5e-12 75.9 74 48.6
Nitab4.5_0000378g0050 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.6e-12 75.1 76 46.1
Nitab4.5_0001298g0020 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.6e-12 75.1 76 46.1
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 3.4e-12 74.7 76 48.7
Nitab4.5_0004432g0020 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.4e-12 74.7 76 44.7
PGSC0003DMG400011805 Solanum tuberosum HOM05D002282 ORTHO05D002403 1.3e-11 72.8 65 47.7
Sopen02g009400 Solanum pennellii HOM05D002282 ORTHO05D002403 1.7e-11 72.4 65 47.7
Os03g0300300 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 6.5e-11 70.5 75 46.7
Solyc02g030080.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 6.5e-11 70.5 65 46.2
CDE11G1255 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.1e-10 69.7 74 48.6
CAN.G14.16 Capsicum annuum HOM05D002282 ORTHO05D002403 1.4e-10 69.3 65 46.2
CDE05G3405 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.9e-10 68.9 74 47.3
Lsat_1_v5_gn_6_76141 Lactuca sativa HOM05D002282 ORTHO05D002403 4.2e-10 67.8 75 48.0
HPP92_021476 Vanilla planifolia HOM05D002282 ORTHO05D002403 7.2e-10 67.0 76 44.7
unitig_37.g12403 Utricularia gibba HOM05D002282 ORTHO05D002403 1.2e-09 66.2 77 42.9
Zm00001eb013980 Zea mays HOM05D002282 ORTHO05D002403 1.6e-09 65.9 75 44.0
ATR0693G215 Amborella trichopoda HOM05D002282 ORTHO05D002403 1.5e-07 59.3 78 41.0
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 1.7e-06 55.8 79 40.5


User provided reference genes

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