Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.8e-201 705.7 352 100.0
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 1.5e-174 616.3 350 85.7
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 2.5e-174 615.5 350 86.3
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.6e-171 605.5 351 86.0
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.8e-169 599.4 346 85.5
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.8e-169 599.4 350 84.3
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 9.1e-169 597.0 346 84.4
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.5e-168 594.7 346 84.4
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 4.5e-168 594.7 347 84.7
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 7.7e-168 594.0 350 84.0
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 7.7e-168 594.0 350 84.0
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.2e-167 592.4 350 83.7
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.6e-165 586.3 349 83.1
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.6e-165 586.3 346 82.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.6e-165 585.1 346 83.2
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 6.1e-165 584.3 350 82.6
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 8.0e-165 583.9 350 83.1
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.4e-164 583.2 350 83.4
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.3e-164 582.4 350 83.1
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 4.0e-164 581.6 350 83.4
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 7.5e-163 577.4 346 81.8
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 4.8e-162 574.7 346 82.1
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.4e-161 572.4 346 82.9
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.4e-161 572.4 345 81.7
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.4e-161 572.4 345 81.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 4.1e-161 571.6 347 81.6
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 5.4e-161 571.2 344 82.0
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.9e-159 565.5 351 80.6
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 8.5e-159 563.9 364 78.8
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 3.2e-158 562.0 347 78.7
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 3.2e-158 562.0 353 79.9
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 5.5e-158 561.2 345 80.0
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-157 560.1 382 74.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 8.0e-157 557.4 347 79.8
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.4e-156 556.6 348 80.2
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.3e-156 555.8 352 79.3
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 6.8e-156 554.3 353 78.8
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 8.8e-156 553.9 331 83.4
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.2e-155 553.5 348 79.3
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.5e-155 553.1 358 78.2
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.0e-155 552.7 345 78.3
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.6e-155 552.4 348 78.7
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.7e-155 551.2 328 83.5
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 5.7e-155 551.2 347 79.0
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.3e-154 550.1 345 77.7
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 4.9e-154 548.1 360 77.2
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 6.3e-154 547.7 348 79.0
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.4e-153 546.6 353 76.8
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.8e-153 546.2 345 77.7
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.1e-153 545.4 354 76.8
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.1e-153 545.0 352 77.3
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.0e-151 540.4 356 76.1
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 2.9e-151 538.9 343 77.0
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.1e-150 537.0 331 79.8
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.1e-150 537.0 327 79.8
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.9e-150 536.2 347 76.9
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.5e-150 535.8 361 74.2
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 5.6e-150 534.6 350 76.0
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 9.5e-150 533.9 349 76.8
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.6e-149 533.1 354 74.9
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.6e-149 533.1 351 75.2
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.3e-148 529.3 333 78.4
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.0e-148 528.9 343 76.4
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.0e-147 526.2 350 74.9
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 9.8e-147 523.9 380 70.5
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.9e-146 522.3 407 67.3
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 4.9e-146 521.5 310 84.2
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.4e-145 520.0 349 74.8
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.4e-145 520.0 347 76.4
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.2e-145 517.3 327 76.5
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.2e-144 516.9 346 75.4
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.0e-144 516.2 345 74.8
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 5.9e-144 514.6 346 74.3
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.3e-143 512.7 351 73.2
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.9e-143 512.3 327 76.5
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 5.0e-143 511.5 322 77.6
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.5e-142 509.2 353 72.5
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.5e-142 509.2 346 73.1
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 4.3e-142 508.4 334 76.0
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 2.8e-141 505.8 328 76.8
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 6.8e-140 501.1 327 74.9
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.9e-140 500.7 323 76.5
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.6e-139 499.2 349 73.4
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 9.8e-139 497.3 335 72.5
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.7e-138 496.5 350 70.9
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.9e-138 495.7 347 71.8
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.9e-138 495.7 324 75.6
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 3.7e-138 495.4 326 73.6
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 8.3e-138 494.2 324 75.3
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.1e-137 493.8 346 72.8
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.1e-137 493.8 345 71.3
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.4e-137 493.4 329 75.7
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 3.2e-137 492.3 327 73.7
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.2e-137 492.3 348 73.9
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 4.1e-137 491.9 324 72.8
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 5.4e-137 491.5 323 73.7
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-136 490.3 364 68.7
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.2e-136 490.3 347 71.2
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 4.6e-136 488.4 330 72.1
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.3e-135 486.1 325 74.2
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 3.0e-135 485.7 318 73.3
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 6.6e-135 484.6 340 69.4
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 6.6e-135 484.6 340 69.7
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 6.6e-135 484.6 318 73.9
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 8.6e-135 484.2 323 71.8
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 8.6e-135 484.2 325 74.5
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.1e-134 483.8 324 72.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.1e-134 483.8 323 71.8
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.9e-134 483.0 323 71.8
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 7.3e-134 481.1 320 72.5
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 9.5e-134 480.7 321 74.8
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.6e-133 479.9 324 71.6
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 2.1e-133 479.6 325 73.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 3.6e-133 478.8 324 71.6
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 4.7e-133 478.4 324 71.6
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 6.2e-133 478.0 360 67.5
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.1e-132 475.7 306 76.5
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 4.4e-131 471.9 350 69.1
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.7e-130 469.9 353 67.1
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 3.7e-130 468.8 268 85.4
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 6.4e-130 468.0 326 73.3
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.3e-127 460.3 324 68.8
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 3.9e-127 458.8 280 82.5
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 8.6e-127 457.6 308 73.4
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 9.5e-126 454.1 352 66.8
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 8.1e-125 451.1 335 66.6
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 6.8e-124 448.0 328 68.6
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.3e-122 443.7 286 79.0
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.6e-120 436.8 526 47.5
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.1e-117 426.4 265 80.8
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-108 396.4 326 63.2
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.3e-101 374.0 343 57.4
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.4e-100 370.5 226 81.0
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 7.6e-99 364.8 332 56.3
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 2.5e-94 349.7 279 64.9
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.8e-92 343.6 242 68.6
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.3e-90 337.4 229 73.8
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.3e-90 337.4 206 81.1
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 4.6e-88 328.9 292 58.2
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 6.7e-87 325.1 267 62.9
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 7.4e-86 321.6 202 78.7
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.4e-84 316.6 230 70.4
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.6e-80 302.4 188 80.3
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 5.0e-74 282.3 163 84.7
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 9.7e-70 268.1 371 42.9
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 5.0e-66 255.8 184 66.8
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 3.3e-62 243.0 186 67.7
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.8e-60 237.3 211 58.8
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 4.1e-60 236.1 154 74.0
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 7.0e-60 235.3 164 72.0
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 8.0e-56 221.9 143 74.8
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 5.7e-54 215.7 269 46.8
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.7e-51 206.8 198 57.6
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 2.2e-50 203.8 336 40.8
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 5.2e-39 166.0 115 74.8
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.7e-32 142.9 138 52.9
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.6e-27 127.9 382 31.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.6e-27 127.9 256 37.5
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 5.6e-25 119.4 285 31.9
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.2e-24 118.2 63 88.9
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 9.8e-22 108.6 66 80.3
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.9e-21 107.1 214 36.9
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.1e-20 103.2 63 77.8
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.0e-18 97.1 57 80.7
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.9e-18 96.7 60 80.0
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 4.7e-16 89.7 86 53.5
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 6.4e-13 79.3 77 51.9
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.3e-09 65.9 55 58.2
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 3.6e-08 63.5 51 56.9
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 1.1e-07 62.0 35 80.0
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 1.1e-07 62.0 57 54.4


User provided reference genes

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