Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00114 Eucalyptus grandis HOM05D002204 ORTHO05D015753 2.3e-84 315.5 152 100.0
Eucgr.J02541 Eucalyptus grandis HOM05D002204 ORTHO05D002875 4.3e-75 284.6 136 100.0
QL06p053171 Quercus lobata HOM05D002204 ORTHO05D002875 1.1e-30 137.1 112 59.8
PGR102G3164 Punica granatum HOM05D002204 ORTHO05D002875 2.7e-29 132.5 108 62.0
Haze_03628 Corylus avellana HOM05D000109 ORTHO05D002875 2.3e-28 129.4 117 49.6
Dinv28312 Davidia involucrata HOM05D002204 ORTHO05D002875 6.3e-26 121.3 122 53.3
ClCG01G020930 Citrullus lanatus HOM05D002204 ORTHO05D002875 1.8e-25 119.8 135 51.1
CsaV3_6G047890 Cucumis sativus L. HOM05D002204 ORTHO05D002875 9.1e-25 117.5 114 56.1
GSVIVG01022299001 Vitis vinifera HOM05D002204 ORTHO05D015753 1.7e-23 113.2 113 54.0
Hma1.2p1_0085F.1_g044540 Hydrangea macrophylla HOM05D002204 ORTHO05D002875 3.8e-23 112.1 127 48.8
Sed0008668 Sechium edule HOM05D002204 ORTHO05D002875 1.1e-22 110.5 110 54.5
CSS0012958 Camellia sinensis var. sinensis HOM05D002204 ORTHO05D002875 9.5e-22 107.5 86 65.1
AUR62016567 Chenopodium quinoa HOM05D002204 ORTHO05D002875 1.8e-20 103.2 117 47.9
GSVIVG01013402001 Vitis vinifera HOM05D002204 ORTHO05D002875 2.3e-20 102.8 118 46.6
Actinidia15511 Actinidia chinensis HOM05D002204 ORTHO05D002875 3.0e-20 102.4 131 43.5
MELO3C008016.2 Cucumis melo HOM05D002204 ORTHO05D002875 2.6e-19 99.4 137 43.8
Hund03595 Selenicereus undatus HOM05D002204 ORTHO05D002875 3.4e-19 99.0 106 50.0
Nitab4.5_0008540g0010 Nicotiana tabacum HOM05D002204 ORTHO05D002875 5.7e-19 98.2 117 50.4
ClCG01G015810 Citrullus lanatus HOM05D002204 ORTHO05D002875 7.5e-19 97.8 137 44.5
CsaV3_6G042090 Cucumis sativus L. HOM05D002204 ORTHO05D002875 9.8e-19 97.4 141 42.6
EL10Ac6g15042 Beta vulgaris HOM05D002204 ORTHO05D002875 1.3e-18 97.1 112 43.8
Manes.05G125100 Manihot esculenta HOM05D002204 ORTHO05D002875 2.2e-18 96.3 87 51.7
arahy.Tifrunner.gnm1.ann1.DF5JNQ Arachis hypogaea HOM05D002204 ORTHO05D002875 2.8e-18 95.9 90 53.3
Sabra05G0197000 Salix brachista HOM05D002204 ORTHO05D002875 8.3e-18 94.4 83 53.0
Gohir.A02G178850 Gossypium hirsutum HOM05D002204 ORTHO05D015753 1.1e-17 94.0 103 49.5
Gohir.D03G000900 Gossypium hirsutum HOM05D002204 ORTHO05D002875 1.1e-17 94.0 103 49.5
Gorai.003G001300 Gossypium raimondii HOM05D002204 ORTHO05D002875 1.1e-17 94.0 103 49.5
Actinidia22889 Actinidia chinensis HOM05D002204 ORTHO05D002875 1.4e-17 93.6 110 50.0
Rhsim10G0192900 Rhododendron simsii HOM05D002204 ORTHO05D002875 1.4e-17 93.6 117 47.0
Nitab4.5_0001467g0130 Nicotiana tabacum HOM05D002204 ORTHO05D002875 1.8e-17 93.2 77 58.4
Phvul.003G271000 Phaseolus vulgaris HOM05D002204 ORTHO05D002875 1.8e-17 93.2 97 50.5
Potri.005G254000 Populus trichocarpa HOM05D002204 ORTHO05D002875 1.8e-17 93.2 86 52.3
arahy.Tifrunner.gnm1.ann1.QAQH8E Arachis hypogaea HOM05D002204 ORTHO05D002875 2.4e-17 92.8 90 52.2
Lj2C501T13 Lonicera japonica HOM05D002204 ORTHO05D015753 3.1e-17 92.4 116 48.3
Lj4A810T53 Lonicera japonica HOM05D002204 ORTHO05D002875 4.1e-17 92.0 129 39.5
TAR628G0862 Trochodendron aralioides HOM05D002204 ORTHO05D002875 5.4e-17 91.7 131 40.5
Migut.L00780 Erythranthe guttata HOM05D002204 ORTHO05D002875 7.0e-17 91.3 101 50.5
Prupe.7G185000 Prunus persica HOM05D002204 ORTHO05D002875 7.0e-17 91.3 91 51.6
Rhsim06G0004700 Rhododendron simsii HOM05D002204 ORTHO05D002875 7.0e-17 91.3 83 55.4
Peaxi162Scf00040g03134 Petunia axillaris HOM05D002204 ORTHO05D002875 1.2e-16 90.5 87 54.0
Ca_02845_v3 Cicer arietinum L. HOM05D002204 ORTHO05D002875 1.6e-16 90.1 79 54.4
Glyma.16G111800 Glycine max HOM05D002204 ORTHO05D002875 1.6e-16 90.1 92 50.0
MSTRG.3635 Avicennia marina HOM05D002204 ORTHO05D002875 2.0e-16 89.7 83 60.2
Gohir.A01G103100 Gossypium hirsutum HOM05D002204 ORTHO05D002875 2.0e-16 89.7 97 47.4
Cc07_g11990 Coffea canephora HOM05D002204 ORTHO05D002875 2.7e-16 89.4 87 57.5
Duzib147G1495 Durio zibethinus HOM05D002204 ORTHO05D002875 2.7e-16 89.4 92 53.3
ECA246G1616 Erigeron canadensis HOM05D002204 ORTHO05D000001 3.5e-16 89.0 81 58.0
Lalb_Chr05g0229591 Lupinus albus HOM05D002204 ORTHO05D002875 3.5e-16 89.0 90 51.1
Sed0026219 Sechium edule HOM05D002467 ORTHO05D002875 4.5e-16 88.6 137 40.1
Glyma.09G197000 Glycine max HOM05D002204 ORTHO05D002875 5.9e-16 88.2 92 50.0
Oeu021991.1 Olea europaea HOM05D002204 ORTHO05D015753 5.9e-16 88.2 131 45.8
Sc07g0001410 Simmondsia chinensis HOM05D002204 ORTHO05D002875 5.9e-16 88.2 79 55.7
TPR.G13732 Trifolium pratense HOM05D002204 ORTHO05D002875 5.9e-16 88.2 100 53.0
Gohir.D01G088400 Gossypium hirsutum HOM05D002204 ORTHO05D002875 7.8e-16 87.8 97 47.4
Gorai.002G114100 Gossypium raimondii HOM05D002204 ORTHO05D002875 7.8e-16 87.8 97 47.4
Lj4g0027136 Lotus japonicus HOM05D002204 ORTHO05D002875 7.8e-16 87.8 97 50.5
Phvul.002G117600 Phaseolus vulgaris HOM05D002204 ORTHO05D002875 7.8e-16 87.8 75 56.0
VMungo1215G3413 Vigna mungo HOM05D002204 ORTHO05D002875 7.8e-16 87.8 75 56.0
SalBow5G0659 Salvia bowleyana HOM05D002204 ORTHO05D002875 1.0e-15 87.4 83 54.2
HanXRQChr16g0531931 Helianthus annuus HOM05D002204 ORTHO05D002875 1.3e-15 87.0 86 53.5
CDE02G2925 Ceratophyllum demersum HOM05D002204 ORTHO05D002875 1.7e-15 86.7 96 47.9
Thecc.08G063100 Theobroma cacao HOM05D002204 ORTHO05D002875 1.7e-15 86.7 85 50.6
Duzib093G0243 Durio zibethinus HOM05D002204 ORTHO05D002875 2.3e-15 86.3 86 48.8
CiPaw.07G135500 Carya illinoinensis HOM05D002204 ORTHO05D002875 2.9e-15 85.9 132 38.6
Duzib116G0792 Durio zibethinus HOM05D002204 ORTHO05D002875 3.8e-15 85.5 84 51.2
Solyc02g082470.4 Solanum lycopersicum HOM05D002204 ORTHO05D002875 5.0e-15 85.1 140 44.3
Sopen02g027160 Solanum pennellii HOM05D002204 ORTHO05D002875 6.6e-15 84.7 140 44.3
CDE04G0343 Ceratophyllum demersum HOM05D002204 ORTHO05D015753 8.6e-15 84.3 128 40.6
Medtr8g073190 Medicago truncatula HOM05D002204 ORTHO05D002875 1.5e-14 83.6 102 48.0
QL02p015199 Quercus lobata HOM05D002204 ORTHO05D002875 1.9e-14 83.2 118 39.8
Potri.007G059000 Populus trichocarpa HOM05D002204 ORTHO05D002875 3.3e-14 82.4 93 47.3
PGSC0003DMG400001509 Solanum tuberosum HOM05D002204 ORTHO05D002875 4.3e-14 82.0 100 48.0
Ciclev10000190m.g Citrus clementina HOM05D002204 ORTHO05D002875 5.6e-14 81.6 120 41.7
COL.COLO4_22561 Corchorus olitorius HOM05D002204 ORTHO05D002875 5.6e-14 81.6 93 48.4
EL10Ac1g01902 Beta vulgaris HOM05D002204 ORTHO05D002875 9.5e-14 80.9 138 37.7
TWI09G0074 Tripterygium wilfordii HOM05D002204 ORTHO05D002875 9.5e-14 80.9 119 42.0
arahy.Tifrunner.gnm1.ann1.770S43 Arachis hypogaea HOM05D002204 ORTHO05D002875 1.2e-13 80.5 75 54.7
arahy.Tifrunner.gnm1.ann1.9UP1GZ Arachis hypogaea HOM05D002204 ORTHO05D002875 1.2e-13 80.5 75 54.7
DCAR_016789 Daucus carota HOM05D002204 ORTHO05D002875 1.2e-13 80.5 108 43.5
CAN.G1238.25 Capsicum annuum HOM05D002204 ORTHO05D002875 1.6e-13 80.1 140 42.1
MD02G1114000 Malus domestica HOM05D002204 ORTHO05D002875 2.1e-13 79.7 124 42.7
Nitab4.5_0009646g0050 Nicotiana tabacum HOM05D002204 ORTHO05D002875 2.1e-13 79.7 110 39.1
Migut.C00370 Erythranthe guttata HOM05D002204 ORTHO05D002875 3.6e-13 79.0 130 36.9
Oeu035852.2 Olea europaea HOM05D002204 ORTHO05D002875 3.6e-13 79.0 80 45.0
COL.COLO4_37749 Corchorus olitorius HOM05D002204 ORTHO05D010558 4.7e-13 78.6 85 47.1
Hund01790 Selenicereus undatus HOM05D002204 ORTHO05D002875 4.7e-13 78.6 76 50.0
Sc02g0009200 Simmondsia chinensis HOM05D002204 ORTHO05D002875 4.7e-13 78.6 76 50.0
SGA_v2.0_scaffold133G34586 Striga asiatica HOM05D002204 ORTHO05D002875 4.7e-13 78.6 124 37.1
Glyma.01G157800 Glycine max HOM05D002204 ORTHO05D002875 6.1e-13 78.2 93 52.7
Peaxi162Scf00680g00118 Petunia axillaris HOM05D002204 ORTHO05D002875 8.0e-13 77.8 85 44.7
Glyma.11G087200 Glycine max HOM05D002204 ORTHO05D002875 1.4e-12 77.0 108 46.3
SalBow7G2538 Salvia bowleyana HOM05D002204 ORTHO05D002875 1.4e-12 77.0 78 44.9
Psat2g147920 Pisum sativum HOM05D002204 ORTHO05D002875 1.8e-12 76.6 87 51.7
TPR.G33891 Trifolium pratense HOM05D002204 ORTHO05D002875 1.8e-12 76.6 107 45.8
MSTRG.24917 Avicennia marina HOM05D002204 ORTHO05D002875 2.3e-12 76.3 83 43.4
MSTRG.995 Avicennia marina HOM05D002204 ORTHO05D002875 3.0e-12 75.9 75 45.3
Haze_22837 Corylus avellana HOM05D002204 ORTHO05D002875 3.0e-12 75.9 115 37.4
Lj2g0022367 Lotus japonicus HOM05D002204 ORTHO05D002875 3.0e-12 75.9 76 53.9
Ca_24990_v3 Cicer arietinum L. HOM05D002204 ORTHO05D002875 6.8e-12 74.7 75 56.0
CAN.G311.140 Capsicum annuum HOM05D002204 ORTHO05D002875 8.9e-12 74.3 86 41.9
Sopen04g036250 Solanum pennellii HOM05D002204 ORTHO05D002875 8.9e-12 74.3 113 36.3
Ah.11g041810 Amaranthus hybridus HOM05D002204 ORTHO05D002875 1.2e-11 73.9 81 49.4
Solyc04g082620.3 Solanum lycopersicum HOM05D002204 ORTHO05D002875 2.0e-11 73.2 85 40.0
TWI36G0160 Tripterygium wilfordii HOM05D002204 ORTHO05D002875 2.0e-11 73.2 117 40.2
CANSAT25G1037 Cannabis sativa HOM05D002204 ORTHO05D002875 4.4e-11 72.0 76 48.7
CAN.G27.58 Capsicum annuum HOM05D000032 ORTHO05D014358 4.4e-11 72.0 72 52.8
Medtr5g024510 Medicago truncatula HOM05D002204 ORTHO05D002875 4.4e-11 72.0 76 56.6
Cc10_g00420 Coffea canephora HOM05D002204 ORTHO05D002875 9.8e-11 70.9 71 47.9
PGSC0003DMG400009991 Solanum tuberosum HOM05D002204 ORTHO05D002875 9.8e-11 70.9 85 38.8
AUR62042588 Chenopodium quinoa HOM05D002204 ORTHO05D002875 1.3e-10 70.5 75 49.3
HanXRQChr14g0427841 Helianthus annuus HOM05D002204 ORTHO05D002875 1.7e-10 70.1 73 47.9
ECA238G1625 Erigeron canadensis HOM05D002204 ORTHO05D002875 2.2e-10 69.7 73 45.2
Atru.chr3.25 Acer truncatum HOM05D002204 ORTHO05D015753 2.9e-10 69.3 117 40.2
Lsat_1_v5_gn_2_660 Lactuca sativa HOM05D002204 ORTHO05D002875 6.4e-10 68.2 74 45.9
Cpa.g.sc26.160 Carica papaya HOM05D002204 ORTHO05D002875 8.3e-10 67.8 79 41.8
Psat4g104640 Pisum sativum HOM05D002204 ORTHO05D002875 8.3e-10 67.8 66 48.5
Cpa.g.sc6.359 Carica papaya HOM05D002204 ORTHO05D002875 1.8e-09 66.6 77 46.8
Atru.chr13.93 Acer truncatum HOM05D002204 ORTHO05D030794 2.4e-09 66.2 82 45.1
CAN.G1167.2 Capsicum annuum HOM05D002204 ORTHO05D015753 7.0e-09 64.7 68 51.5
TWI56G0036 Tripterygium wilfordii HOM05D002204 ORTHO05D002875 9.2e-09 64.3 112 35.7
MBI08_g06881_MAGBIO Magnolia biondii HOM05D002204 ORTHO05D002875 2.0e-08 63.2 96 40.6
Ciclev10027213m.g Citrus clementina HOM05D002204 ORTHO05D002875 3.5e-08 62.4 65 49.2
RcHm_v2.0_Chr2g0096971 Rosa chinensis HOM05D002204 ORTHO05D002875 1.3e-07 60.5 89 42.7
THA.LOC104813183 Tarenaya hassleriana HOM05D002204 ORTHO05D002875 3.9e-07 58.9 81 38.3
ATR0807G006 Amborella trichopoda HOM05D002204 ORTHO05D002875 5.0e-07 58.5 91 40.7
unitig_46.g18026 Utricularia gibba HOM05D002204 ORTHO05D002875 5.0e-07 58.5 69 37.7
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 1.5e-06 57.0 66 47.0
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.9e-06 56.6 78 41.0
FAN13G3236 Fragaria x ananassa HOM05D002204 ORTHO05D002875 5.6e-06 55.1 122 30.3
Medtr8g072590 Medicago truncatula HOM05D002204 ORTHO05D002875 5.6e-06 55.1 83 34.9
Prupe.5G008100 Prunus persica HOM05D002204 ORTHO05D002875 7.3e-06 54.7 123 32.5


User provided reference genes

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