Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 3.3e-107 391.7 201 100.0
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 4.1e-65 251.9 199 63.3
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.6e-64 250.0 198 64.6
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 2.3e-63 246.1 196 64.8
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 3.8e-63 245.4 199 60.8
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 8.6e-63 244.2 196 63.3
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 3.3e-62 242.3 200 60.5
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 4.2e-62 241.9 201 61.7
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 7.2e-62 241.1 200 61.0
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 2.1e-61 239.6 200 59.5
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 2.8e-61 239.2 199 60.3
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 3.6e-61 238.8 198 61.1
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 8.0e-61 237.7 196 61.7
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.4e-60 236.9 201 60.2
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.8e-60 236.5 199 57.8
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.8e-60 236.5 196 62.2
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 2.3e-60 236.1 197 61.4
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.3e-60 236.1 200 59.0
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.0e-60 235.3 199 57.3
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 4.0e-60 235.3 199 58.3
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 8.9e-60 234.2 200 59.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.2e-59 233.8 199 60.8
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.4e-59 231.9 189 61.4
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 5.7e-59 231.5 198 60.1
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 7.5e-59 231.1 195 61.0
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.7e-58 229.9 188 62.2
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 2.2e-58 229.6 196 59.2
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 3.7e-58 228.8 200 58.0
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.1e-57 227.3 198 60.6
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.8e-57 226.5 189 60.3
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 2.4e-57 226.1 195 60.0
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.4e-57 226.1 191 57.6
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 3.1e-57 225.7 191 60.7
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 4.1e-57 225.3 199 56.3
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 5.4e-57 224.9 198 56.6
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 5.4e-57 224.9 199 57.3
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 5.4e-57 224.9 195 61.0
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 7.0e-57 224.6 189 59.3
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 9.2e-57 224.2 200 57.0
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 9.2e-57 224.2 199 57.3
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.2e-56 223.8 198 58.1
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.2e-56 223.8 246 49.2
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.2e-56 223.8 198 55.1
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.6e-56 223.4 198 59.1
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.7e-56 222.6 192 55.7
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 3.5e-56 222.2 201 56.2
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 4.5e-56 221.9 200 58.0
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 5.9e-56 221.5 195 56.9
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-55 220.7 199 56.8
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.3e-55 220.3 198 55.6
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.3e-55 219.5 199 54.8
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.3e-55 219.5 190 56.3
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 3.8e-55 218.8 196 54.6
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 3.8e-55 218.8 199 56.3
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 6.6e-55 218.0 193 57.0
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.6e-55 218.0 190 55.8
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.9e-54 216.5 197 54.3
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.9e-54 216.5 199 56.8
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.6e-54 214.9 185 56.2
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 9.5e-54 214.2 192 56.2
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.6e-53 213.4 199 53.8
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 2.8e-53 212.6 199 53.8
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.8e-53 212.6 199 55.3
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 4.7e-53 211.8 199 54.8
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 4.7e-53 211.8 199 54.8
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 4.7e-53 211.8 198 53.0
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 6.1e-53 211.5 199 53.3
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.1e-53 211.5 191 57.1
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.0e-52 210.7 191 56.0
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.4e-52 210.3 186 55.4
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 3.1e-52 209.1 197 52.8
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.2e-52 208.4 195 53.3
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.8e-52 208.0 192 54.2
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-51 206.8 190 52.6
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.6e-51 206.1 191 54.5
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.6e-51 206.1 200 56.5
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.4e-51 205.7 192 54.7
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 4.4e-51 205.3 200 54.5
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 5.8e-51 204.9 194 52.6
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 7.5e-51 204.5 200 53.5
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 7.5e-51 204.5 189 55.0
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.3e-50 203.8 199 51.8
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.2e-50 203.0 194 50.5
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 2.2e-50 203.0 189 54.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.2e-50 203.0 185 55.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.9e-50 201.8 201 54.2
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.9e-50 201.8 199 52.3
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 8.3e-50 201.1 191 52.9
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.1e-49 200.7 199 52.3
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 3.2e-49 199.1 192 55.2
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 3.2e-49 199.1 181 58.6
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 5.4e-49 198.4 195 52.3
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 7.0e-49 198.0 199 51.3
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 9.2e-49 197.6 192 54.7
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-48 196.8 192 54.2
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.0e-48 196.4 199 52.3
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 2.0e-48 196.4 194 49.5
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.0e-48 196.4 196 53.6
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 2.7e-48 196.1 199 50.8
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 3.5e-48 195.7 194 47.9
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 3.5e-48 195.7 192 53.1
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.0e-48 194.9 197 52.3
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 7.8e-48 194.5 194 47.9
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 7.8e-48 194.5 192 54.2
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 7.8e-48 194.5 199 51.3
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.0e-47 194.1 199 50.8
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.3e-47 193.7 201 51.2
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.3e-47 193.7 174 55.2
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.7e-47 193.4 199 51.8
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 2.3e-47 193.0 194 46.4
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.3e-47 193.0 190 52.6
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.9e-47 192.2 194 53.1
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 8.6e-47 191.0 194 47.4
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-46 190.7 192 54.2
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.9e-46 189.9 192 52.1
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.5e-46 189.5 149 59.7
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.3e-46 188.7 199 48.7
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.6e-46 188.3 195 49.2
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 7.3e-46 188.0 189 46.6
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.2e-45 187.2 198 53.0
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-45 187.2 192 53.1
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.2e-45 187.2 189 46.6
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.6e-45 186.8 189 46.0
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.7e-45 185.3 185 52.4
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 6.2e-45 184.9 178 56.7
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 8.0e-45 184.5 189 47.1
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.1e-44 184.1 192 50.0
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.1e-44 184.1 194 51.5
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.1e-44 184.1 149 60.4
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 1.4e-44 183.7 189 46.6
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 2.3e-44 183.0 194 51.5
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.0e-44 182.2 164 53.0
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.0e-44 182.2 198 50.5
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.6e-43 179.5 178 53.4
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.4e-43 179.1 187 50.3
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 3.4e-43 179.1 189 48.1
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.3e-42 177.2 190 48.4
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.4e-41 173.7 197 47.2
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.4e-41 173.7 181 54.1
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.2e-40 170.6 144 58.3
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 7.8e-40 167.9 199 44.7
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.3e-39 167.2 189 43.4
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.7e-39 166.8 192 47.4
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.0e-39 166.0 192 46.4
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 8.6e-39 164.5 193 46.6
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.3e-38 162.2 189 45.5
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 4.3e-38 162.2 161 54.0
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 2.3e-36 156.4 192 43.8
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.5e-35 153.7 164 47.6
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 3.4e-35 152.5 192 43.2
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.8e-35 151.8 158 52.5
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 7.5e-35 151.4 193 42.0
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.2e-33 146.0 124 58.1
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 5.4e-33 145.2 195 41.5
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.5e-32 142.5 190 44.7
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.8e-32 141.4 157 45.9
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-30 137.5 200 42.0
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.3e-30 136.0 150 48.0
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.6e-29 133.7 130 51.5
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 4.7e-29 132.1 131 51.1
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.8e-27 125.2 149 41.6
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 5.8e-27 125.2 114 56.1
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.8e-26 122.5 159 44.0
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.6e-23 111.7 188 37.2
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 5.8e-19 98.6 112 49.1
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 5.8e-19 98.6 191 33.0
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 7.1e-17 91.7 185 36.8
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 1.3e-15 87.4 78 53.8
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 3.3e-14 82.8 204 30.9
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.6e-14 81.3 105 46.7
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.6e-13 80.5 215 27.0
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 9.0e-12 74.7 74 50.0
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.5e-11 73.9 84 45.2
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.4e-11 72.8 75 48.0
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.2e-10 70.1 163 31.9
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 8.4e-10 68.2 160 32.5
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.1e-09 67.8 91 45.1
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 3.2e-09 66.2 99 43.4
FAN17G0163 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.9e-08 61.6 71 49.3


User provided reference genes

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