Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00014 Eucalyptus grandis HOM05D001792 ORTHO05D001821 4.8e-42 174.1 89 100.0
Eucgr.L01927 Eucalyptus grandis HOM05D001792 ORTHO05D001821 5.0e-31 137.5 71 100.0
Eucgr.A00249 Eucalyptus grandis HOM05D001792 ORTHO05D001821 2.3e-28 128.6 71 94.4
Eucgr.A00052 Eucalyptus grandis HOM05D001792 ORTHO05D001821 4.0e-28 127.9 72 93.1
QL10p045285 Quercus lobata HOM05D001792 ORTHO05D001821 2.8e-26 121.7 83 74.7
Eucgr.A00248 Eucalyptus grandis HOM05D001792 ORTHO05D001821 6.3e-26 120.6 77 84.4
Haze_00712 Corylus avellana HOM05D001792 ORTHO05D001821 2.0e-24 115.5 81 72.8
Prupe.6G172500 Prunus persica HOM05D001792 ORTHO05D001821 2.7e-24 115.2 81 70.4
CAN.G136.14 Capsicum annuum HOM05D001792 ORTHO05D001821 3.5e-24 114.8 81 70.4
Peaxi162Scf00180g00127 Petunia axillaris HOM05D001792 ORTHO05D001821 7.7e-24 113.6 81 69.1
Sopen06g018460 Solanum pennellii HOM05D001792 ORTHO05D001821 7.7e-24 113.6 81 69.1
TWI31G0216 Tripterygium wilfordii HOM05D001792 ORTHO05D001821 7.7e-24 113.6 81 71.6
Nitab4.5_0002544g0050 Nicotiana tabacum HOM05D001792 ORTHO05D001821 1.0e-23 113.2 81 70.4
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 1.3e-23 112.8 87 64.4
Solyc06g053400.3 Solanum lycopersicum HOM05D001792 ORTHO05D001821 1.3e-23 112.8 81 69.1
PGSC0003DMG400016337 Solanum tuberosum HOM05D001792 ORTHO05D001821 1.3e-23 112.8 69 78.3
Duzib151G0160 Durio zibethinus HOM05D001792 ORTHO05D001821 1.7e-23 112.5 73 78.1
Nitab4.5_0001586g0080 Nicotiana tabacum HOM05D001792 ORTHO05D001821 1.7e-23 112.5 69 79.7
PSO017G0743 Papaver somniferum HOM05D001792 ORTHO05D001821 1.7e-23 112.5 77 70.1
PSO675G0030 Papaver somniferum HOM05D001792 ORTHO05D001821 1.7e-23 112.5 77 70.1
SGA_v2.0_scaffold17G08087 Striga asiatica HOM05D001792 ORTHO05D001821 1.7e-23 112.5 77 72.7
Cfa015782 Carpinus fangiana HOM05D001792 ORTHO05D001821 2.2e-23 112.1 81 70.4
Thhalv10007073m.g Eutrema salsugineum HOM05D001792 ORTHO05D001821 3.8e-23 111.3 81 66.7
Lj5g0027743 Lotus japonicus HOM05D001792 ORTHO05D001821 3.8e-23 111.3 72 72.2
Duzib212G0950 Durio zibethinus HOM05D001792 ORTHO05D001821 5.0e-23 110.9 81 70.4
A06p14540 Brassica napus HOM05D001792 ORTHO05D001821 8.5e-23 110.2 81 66.7
BraA06t24580Z Brassica rapa HOM05D001792 ORTHO05D001821 8.5e-23 110.2 81 66.7
BcaB07g31860 Brassica carinata HOM05D001792 ORTHO05D001821 1.1e-22 109.8 77 67.5
GSVIVG01013566001 Vitis vinifera HOM05D001792 ORTHO05D001821 1.1e-22 109.8 77 71.4
Cpa.g.sc71.35 Carica papaya HOM05D001792 ORTHO05D001821 1.5e-22 109.4 73 76.7
AL2G33895 Arabidopsis lyrata HOM05D001792 ORTHO05D001821 1.9e-22 109.0 83 68.7
AT1G74040 Arabidopsis thaliana HOM05D001792 ORTHO05D001821 1.9e-22 109.0 83 68.7
PGR142G2160 Punica granatum HOM05D001792 ORTHO05D001821 1.9e-22 109.0 82 70.7
C08p43360 Brassica napus HOM05D001792 ORTHO05D001821 2.5e-22 108.6 81 66.7
BolC8t51885H Brassica oleracea HOM05D001792 ORTHO05D001821 2.5e-22 108.6 81 66.7
CiPaw.01G103600 Carya illinoinensis HOM05D001792 ORTHO05D001821 2.5e-22 108.6 81 66.7
Hma1.2p1_0554F.1_g177850 Hydrangea macrophylla HOM05D001792 ORTHO05D001821 2.5e-22 108.6 66 83.3
MD01G1019700 Malus domestica HOM05D001792 ORTHO05D001821 2.5e-22 108.6 81 67.9
Thecc.04G184000 Theobroma cacao HOM05D001792 ORTHO05D001821 2.5e-22 108.6 81 67.9
TPR.G10415 Trifolium pratense HOM05D001792 ORTHO05D001821 2.5e-22 108.6 85 65.9
A09p59930 Brassica napus HOM05D001792 ORTHO05D001821 3.2e-22 108.2 76 69.7
AL1G30940 Arabidopsis lyrata HOM05D001792 ORTHO05D001821 4.2e-22 107.8 77 66.2
BcaC05g25747 Brassica carinata HOM05D001792 ORTHO05D001821 4.2e-22 107.8 77 67.5
BolC5t30378H Brassica oleracea HOM05D001792 ORTHO05D001821 4.2e-22 107.8 77 67.5
BraA09t41364Z Brassica rapa HOM05D001792 ORTHO05D001821 4.2e-22 107.8 76 68.4
Gohir.A03G096100 Gossypium hirsutum HOM05D001792 ORTHO05D001821 4.2e-22 107.8 73 74.0
Ciclev10020218m.g Citrus clementina HOM05D001792 ORTHO05D001821 5.5e-22 107.5 81 69.1
Gohir.D02G112700 Gossypium hirsutum HOM05D001792 ORTHO05D001821 5.5e-22 107.5 73 72.6
Gorai.005G127500 Gossypium raimondii HOM05D001792 ORTHO05D001821 5.5e-22 107.5 73 72.6
THA.LOC104813896 Tarenaya hassleriana HOM05D001792 ORTHO05D001821 5.5e-22 107.5 81 67.9
CARHR019120 Cardamine hirsuta HOM05D001792 ORTHO05D001821 7.2e-22 107.1 77 67.5
Atru.chr8.1337 Acer truncatum HOM05D001792 ORTHO05D001821 9.4e-22 106.7 82 68.3
C05p16770 Brassica napus HOM05D001792 ORTHO05D001821 9.4e-22 106.7 77 66.2
Rhsim04G0176700 Rhododendron simsii HOM05D001792 ORTHO05D001821 9.4e-22 106.7 81 70.4
Sp1g16450 Schrenkiella parvula HOM05D001792 ORTHO05D001821 9.4e-22 106.7 77 66.2
Carub.0001s1813 Capsella rubella HOM05D001792 ORTHO05D001821 1.2e-21 106.3 81 65.4
TAR628G0485 Trochodendron aralioides HOM05D001792 ORTHO05D001821 1.2e-21 106.3 81 64.2
Atru.chr3.1618 Acer truncatum HOM05D001792 ORTHO05D001821 1.6e-21 105.9 68 77.9
Lalb_Chr06g0164461 Lupinus albus HOM05D001792 ORTHO05D001821 1.6e-21 105.9 66 80.3
TWI79G1439 Tripterygium wilfordii HOM05D001792 ORTHO05D001821 2.1e-21 105.5 81 67.9
Aa31LG7G3190 Aethionema arabicum HOM05D001792 ORTHO05D001821 2.7e-21 105.1 77 64.9
SalBow3G0730 Salvia bowleyana HOM05D001792 ORTHO05D001821 2.7e-21 105.1 77 68.8
Sp5g29260 Schrenkiella parvula HOM05D001792 ORTHO05D001821 2.7e-21 105.1 86 64.0
AT1G18500 Arabidopsis thaliana HOM05D001792 ORTHO05D001821 3.6e-21 104.8 77 64.9
Thhalv10018267m.g Eutrema salsugineum HOM05D001792 ORTHO05D001821 3.6e-21 104.8 68 75.0
Duzib268G1036 Durio zibethinus HOM05D001792 ORTHO05D001821 8.0e-21 103.6 81 66.7
unitig_52.g17676 Utricularia gibba HOM05D001792 ORTHO05D001821 8.0e-21 103.6 73 72.6
SGA_v2.0_scaffold12G06157 Striga asiatica HOM05D001792 ORTHO05D001821 1.0e-20 103.2 77 70.1
CARHR067180 Cardamine hirsuta HOM05D001792 ORTHO05D001821 1.4e-20 102.8 68 73.5
Migut.G01068 Erythranthe guttata HOM05D001792 ORTHO05D001821 1.4e-20 102.8 66 75.8
Aqoxy7G00120 Aquilegia oxysepala HOM05D001792 ORTHO05D001821 2.3e-20 102.1 66 74.2
arahy.Tifrunner.gnm1.ann1.Y12SSB Arachis hypogaea HOM05D001792 ORTHO05D001821 2.3e-20 102.1 69 71.0
Ca_11395_v3 Cicer arietinum L. HOM05D001792 ORTHO05D001821 2.3e-20 102.1 83 62.7
MELO3C020296.2 Cucumis melo HOM05D001792 ORTHO05D001821 2.3e-20 102.1 73 71.2
arahy.Tifrunner.gnm1.ann1.S3LEX3 Arachis hypogaea HOM05D001792 ORTHO05D001821 4.0e-20 101.3 68 72.1
ClCG05G010890 Citrullus lanatus HOM05D001792 ORTHO05D001821 4.0e-20 101.3 66 77.3
CsaV3_3G021690 Cucumis sativus L. HOM05D001792 ORTHO05D001821 4.0e-20 101.3 66 77.3
Actinidia35902 Actinidia chinensis HOM05D001792 ORTHO05D001821 5.2e-20 100.9 81 67.9
Carub.0002s2083 Capsella rubella HOM05D001792 ORTHO05D001821 5.2e-20 100.9 68 73.5
MD15G1332600 Malus domestica HOM05D001792 ORTHO05D001821 6.8e-20 100.5 81 63.0
AagrBONN_evm.TU.Sc2ySwM_344.5482 Anthoceros agrestis HOM05D001792 ORTHO05D001821 8.8e-20 100.1 75 66.7
Dinv44173 Davidia involucrata HOM05D001792 ORTHO05D001821 8.8e-20 100.1 66 78.8
Eucgr.A00246 Eucalyptus grandis HOM05D001792 ORTHO05D001821 8.8e-20 100.1 63 84.1
Cc04_g12930 Coffea canephora HOM05D001792 ORTHO05D001821 1.2e-19 99.8 74 70.3
ATR0743G008 Amborella trichopoda HOM05D001792 ORTHO05D001821 1.5e-19 99.4 78 66.7
Glyma.20G245300 Glycine max HOM05D001792 ORTHO05D001821 1.5e-19 99.4 74 70.3
Hund12357 Selenicereus undatus HOM05D001792 ORTHO05D001821 1.5e-19 99.4 85 61.2
Sc13g0007350 Simmondsia chinensis HOM05D001792 ORTHO05D001821 1.5e-19 99.4 66 72.7
Aa31LG4G4350 Aethionema arabicum HOM05D001792 ORTHO05D001821 2.0e-19 99.0 86 64.0
Medtr1g116500 Medicago truncatula HOM05D001792 ORTHO05D001821 2.6e-19 98.6 66 72.7
CiPaw.01G103800 Carya illinoinensis HOM05D001792 ORTHO05D001821 3.4e-19 98.2 69 75.4
CDE08G0437 Ceratophyllum demersum HOM05D001792 ORTHO05D001821 3.4e-19 98.2 81 63.0
Oeu053854.1 Olea europaea HOM05D001792 ORTHO05D001821 3.4e-19 98.2 75 68.0
Potri.005G083100 Populus trichocarpa HOM05D001792 ORTHO05D001821 3.4e-19 98.2 68 72.1
CSS0045396 Camellia sinensis var. sinensis HOM05D001792 ORTHO05D001821 4.4e-19 97.8 66 77.3
Nn4g25034 Nelumbo nucifera HOM05D001792 ORTHO05D001821 4.4e-19 97.8 69 71.0
Gohir.A10G134600 Gossypium hirsutum HOM05D001792 ORTHO05D001821 5.7e-19 97.4 81 64.2
Gohir.D10G131900 Gossypium hirsutum HOM05D001792 ORTHO05D001821 7.5e-19 97.1 81 64.2
Gorai.011G145600 Gossypium raimondii HOM05D001792 ORTHO05D001821 7.5e-19 97.1 81 64.2
SEGI_37051 Sequoiadendron giganteum HOM05D001792 ORTHO05D001821 7.5e-19 97.1 66 72.7
Ah.13g073380 Amaranthus hybridus HOM05D001792 ORTHO05D001821 9.8e-19 96.7 77 68.8
CAN.G653.6 Capsicum annuum HOM05D001792 ORTHO05D001821 9.8e-19 96.7 69 69.6
Nitab4.5_0000013g0570 Nicotiana tabacum HOM05D001792 ORTHO05D001821 9.8e-19 96.7 69 69.6
Rhsim04G0176800 Rhododendron simsii HOM05D001792 ORTHO05D001821 9.8e-19 96.7 76 69.7
Sabra05G0068200 Salix brachista HOM05D001792 ORTHO05D001821 1.3e-18 96.3 73 65.8
Sed0023965 Sechium edule HOM05D001792 ORTHO05D001821 1.3e-18 96.3 66 69.7
AUR62002418 Chenopodium quinoa HOM05D001792 ORTHO05D001821 1.7e-18 95.9 77 64.9
AUR62023771 Chenopodium quinoa HOM05D001792 ORTHO05D001821 1.7e-18 95.9 77 64.9
Glyma.10G295400 Glycine max HOM05D001792 ORTHO05D001821 2.8e-18 95.1 74 68.9
vmacro08538 Vaccinium macrocarpon HOM05D001792 ORTHO05D001821 4.8e-18 94.4 94 58.5
Phvul.007G004600 Phaseolus vulgaris HOM05D001792 ORTHO05D001821 6.3e-18 94.0 74 70.3
Hund22533 Selenicereus undatus HOM05D001792 ORTHO05D001821 8.3e-18 93.6 66 75.8
PGSC0003DMG400014622 Solanum tuberosum HOM05D001792 ORTHO05D001821 1.1e-17 93.2 69 68.1
VMungo0720G2015 Vigna mungo HOM05D001792 ORTHO05D001821 1.4e-17 92.8 75 66.7
Nitab4.5_0001411g0050 Nicotiana tabacum HOM05D001792 ORTHO05D001821 1.8e-17 92.4 69 68.1
FAN26G1767 Fragaria x ananassa HOM05D001792 ORTHO05D001821 2.4e-17 92.0 77 66.2
Manes.04G049401 Manihot esculenta HOM05D001792 ORTHO05D001821 3.1e-17 91.7 72 66.7
Sopen08g005060 Solanum pennellii HOM05D001792 ORTHO05D001821 3.1e-17 91.7 69 66.7
RcHm_v2.0_Chr2g0116551 Rosa chinensis HOM05D001792 ORTHO05D001821 4.1e-17 91.3 77 67.5
Atru.chr3.370 Acer truncatum HOM05D001792 ORTHO05D001821 5.4e-17 90.9 78 61.5
FAN28G1553 Fragaria x ananassa HOM05D001792 ORTHO05D001821 5.4e-17 90.9 77 64.9
Manes.11G115800 Manihot esculenta HOM05D001792 ORTHO05D001821 5.4e-17 90.9 72 68.1
MSTRG.21991 Avicennia marina HOM05D001792 ORTHO05D001821 9.1e-17 90.1 85 57.6
EL10Ac3g06112 Beta vulgaris HOM05D001792 ORTHO05D001821 9.1e-17 90.1 74 66.2
HanXRQChr14g0454131 Helianthus annuus HOM05D001792 ORTHO05D001821 9.1e-17 90.1 65 70.8
CANSAT78G0602 Cannabis sativa HOM05D001792 ORTHO05D001821 1.2e-16 89.7 70 68.6
FvH4_1g22570 Fragaria vesca HOM05D001792 ORTHO05D001821 1.6e-16 89.4 77 63.6
CSS0041272 Camellia sinensis var. sinensis HOM05D001792 ORTHO05D001821 2.0e-16 89.0 66 72.7
Solyc08g014130.3 Solanum lycopersicum HOM05D001792 ORTHO05D001821 2.7e-16 88.6 69 65.2
Peaxi162Scf00075g01331 Petunia axillaris HOM05D001792 ORTHO05D001821 4.5e-16 87.8 69 62.3
SMO200G0184 Selaginella moellendorffii HOM05D001792 ORTHO05D001821 5.9e-16 87.4 72 61.1
Zm00001eb405040 Zea mays HOM05D001792 ORTHO05D001821 7.7e-16 87.0 66 63.6
FAN19G3177 Fragaria x ananassa HOM05D001792 ORTHO05D001821 1.3e-15 86.3 77 62.3
ECA248G0333 Erigeron canadensis HOM05D001792 ORTHO05D001821 1.7e-15 85.9 65 67.7
FvH4_1g22460 Fragaria vesca HOM05D001792 ORTHO05D001821 1.7e-15 85.9 77 62.3
Zm00001eb093160 Zea mays HOM05D001792 ORTHO05D001821 2.3e-15 85.5 66 63.6
Zm00001eb196510 Zea mays HOM05D001792 ORTHO05D001821 2.3e-15 85.5 78 57.7
SHI06500 Sapria himalayana HOM05D001792 ORTHO05D001821 3.8e-15 84.7 72 61.1
DCAR_023912 Daucus carota HOM05D001792 ORTHO05D001821 6.6e-15 84.0 65 66.2
Mapoly0002s0332 Marchantia polymorpha HOM05D001792 ORTHO05D001821 1.1e-14 83.2 72 55.6
Glyma.19G120600 Glycine max HOM05D001792 ORTHO05D001821 1.5e-14 82.8 68 60.3
SalBow6G2448 Salvia bowleyana HOM05D001792 ORTHO05D001821 4.2e-14 81.3 80 57.5
CBR_g23345 Chara braunii HOM05D001792 ORTHO05D001821 5.5e-14 80.9 72 63.9
Lsat_1_v5_gn_1_71501 Lactuca sativa HOM05D001792 ORTHO05D001821 5.5e-14 80.9 63 68.3
Os12g0138900 Oryza sativa ssp. japonica HOM05D001792 ORTHO05D001821 1.6e-13 79.3 67 61.2
Os11g0142500 Oryza sativa ssp. japonica HOM05D001792 ORTHO05D001821 2.8e-13 78.6 67 61.2
Lalb_Chr07g0191381 Lupinus albus HOM05D001792 ORTHO05D001821 4.7e-13 77.8 66 66.7
HPP92_011299 Vanilla planifolia HOM05D001792 ORTHO05D001821 8.0e-13 77.0 67 59.7
Glyma.19G120400 Glycine max HOM05D001792 ORTHO05D001821 2.3e-12 75.5 68 57.4
C08p43210 Brassica napus HOM05D001792 ORTHO05D001821 4.0e-12 74.7 79 53.2
BolC8t51875H Brassica oleracea HOM05D001792 ORTHO05D001821 4.0e-12 74.7 79 53.2
Pp3c3_21830 Physcomitrium patens HOM05D001792 ORTHO05D001821 1.2e-11 73.2 66 59.1
Glyma.03G005700 Glycine max HOM05D001792 ORTHO05D001821 2.0e-11 72.4 67 59.7
Lalb_Chr07g0191371 Lupinus albus HOM05D001792 ORTHO05D001821 2.6e-11 72.0 68 55.9
Pp3c4_4420 Physcomitrium patens HOM05D001792 ORTHO05D001821 3.4e-11 71.6 66 60.6
Peaxi162Scf00075g01421 Petunia axillaris HOM05D001792 ORTHO05D001821 9.8e-11 70.1 68 50.0
Glyma.13G024900 Glycine max HOM05D001792 ORTHO05D001821 2.8e-10 68.6 68 52.9
arahy.Tifrunner.gnm1.ann1.Y8K7VT Arachis hypogaea HOM05D001792 ORTHO05D001821 8.3e-10 67.0 69 53.6
Glyma.11G169473 Glycine max HOM05D001792 ORTHO05D001821 8.3e-10 67.0 68 51.5
VMungo1383G1729 Vigna mungo HOM05D001792 ORTHO05D001821 1.1e-09 66.6 68 51.5
arahy.Tifrunner.gnm1.ann1.R43499 Arachis hypogaea HOM05D001792 ORTHO05D001821 1.4e-09 66.2 66 51.5
PGR004G1113 Punica granatum HOM05D001792 ORTHO05D001821 3.1e-09 65.1 72 55.6
Phvul.001G091600 Phaseolus vulgaris HOM05D001792 ORTHO05D001821 4.1e-09 64.7 68 50.0
Phvul.001G103833 Phaseolus vulgaris HOM05D001792 ORTHO05D001821 4.1e-09 64.7 68 51.5
Sed0001526 Sechium edule HOM05D001792 ORTHO05D001821 5.4e-09 64.3 63 55.6
Cre06.g258733 Chlamydomonas reinhardtii HOM05D001792 ORTHO05D001821 9.2e-09 63.5 79 44.3
Peaxi162Scf00075g01420 Petunia axillaris HOM05D001792 ORTHO05D001821 9.2e-09 63.5 61 52.5
HPP92_011278 Vanilla planifolia HOM05D001792 ORTHO05D001821 1.2e-08 63.2 58 56.9
MCO04G119 Micromonas commoda HOM05D001792 ORTHO05D001821 4.5e-08 61.2 83 42.2
Lj1g0001497 Lotus japonicus HOM05D001792 ORTHO05D001821 2.3e-07 58.9 66 48.5
Lalb_Chr24g0403551 Lupinus albus HOM05D001792 ORTHO05D001821 6.6e-07 57.4 63 46.0
PRCOL_00001161 Prasinoderma coloniale HOM05D001792 ORTHO05D001821 4.3e-06 54.7 70 47.1
Os12g0589898 Oryza sativa ssp. japonica HOM05D001792 ORTHO05D001821 9.5e-06 53.5 53 54.7


User provided reference genes

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