Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 2.5e-83 312.4 195 100.0
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 7.5e-64 247.7 195 65.6
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 7.3e-51 204.5 194 56.7
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 2.1e-50 203.0 184 58.7
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 8.9e-49 197.6 194 53.6
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 4.4e-48 195.3 194 53.6
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 4.4e-48 195.3 194 53.6
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 5.8e-48 194.9 203 51.7
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 5.8e-48 194.9 203 51.7
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 5.8e-48 194.9 203 51.7
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 7.5e-48 194.5 197 53.3
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 9.9e-48 194.1 187 54.0
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 3.7e-47 192.2 198 52.5
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.9e-47 191.8 188 56.9
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 6.4e-47 191.4 198 51.0
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 6.4e-47 191.4 197 50.8
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 8.3e-47 191.0 189 53.4
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.1e-46 190.7 185 55.7
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.4e-46 190.3 193 50.8
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 1.9e-46 189.9 193 50.8
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 2.4e-46 189.5 182 56.6
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.4e-46 189.5 200 51.5
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 3.2e-46 189.1 198 51.0
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 4.1e-46 188.7 199 53.3
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 5.4e-46 188.3 194 52.1
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 5.4e-46 188.3 172 59.9
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 9.2e-46 187.6 195 51.3
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 9.2e-46 187.6 195 51.3
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.6e-45 186.8 199 52.3
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 1.6e-45 186.8 195 50.3
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.1e-45 186.4 198 53.5
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 2.7e-45 186.0 194 51.5
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 3.5e-45 185.7 178 57.3
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 3.5e-45 185.7 179 53.6
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 4.6e-45 185.3 178 52.8
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 4.6e-45 185.3 195 50.8
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.0e-44 184.1 202 50.5
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 1.0e-44 184.1 195 50.3
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 1.0e-44 184.1 195 50.3
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.0e-44 184.1 198 50.5
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 1.3e-44 183.7 192 68.8
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.3e-44 183.7 194 48.5
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 2.3e-44 183.0 179 53.1
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.3e-44 183.0 198 50.5
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 3.9e-44 182.2 182 54.4
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 5.1e-44 181.8 201 51.2
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 6.6e-44 181.4 174 56.9
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 6.6e-44 181.4 179 53.6
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.1e-43 180.6 179 52.5
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.1e-43 180.6 185 53.0
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.9e-43 179.9 183 54.1
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 1.9e-43 179.9 190 51.1
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.5e-43 179.5 194 49.0
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 3.3e-43 179.1 194 51.0
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.3e-43 179.1 185 52.4
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 4.3e-43 178.7 194 50.0
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 5.6e-43 178.3 199 49.2
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 5.6e-43 178.3 174 63.2
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 7.3e-43 177.9 199 48.7
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 7.3e-43 177.9 170 53.5
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 9.5e-43 177.6 198 50.0
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.1e-42 176.4 181 53.0
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 2.1e-42 176.4 177 53.1
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 2.8e-42 176.0 182 51.1
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 2.8e-42 176.0 179 51.4
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 3.6e-42 175.6 181 50.8
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 3.6e-42 175.6 194 50.5
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 4.7e-42 175.3 169 58.0
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 4.7e-42 175.3 198 48.5
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 6.2e-42 174.9 195 47.7
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 6.2e-42 174.9 195 47.7
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 6.2e-42 174.9 194 50.0
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.8e-41 173.3 166 55.4
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.8e-41 173.3 200 48.5
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.4e-41 172.9 194 50.5
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 3.1e-41 172.6 178 52.2
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 6.8e-41 171.4 199 48.7
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 8.9e-41 171.0 174 51.7
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 8.9e-41 171.0 194 50.0
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 1.2e-40 170.6 194 50.5
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 2.6e-40 169.5 174 60.9
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 2.6e-40 169.5 174 60.9
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 4.4e-40 168.7 170 52.4
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 7.6e-40 167.9 170 51.8
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 7.6e-40 167.9 174 51.1
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 9.9e-40 167.5 200 48.0
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 9.9e-40 167.5 166 54.2
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.7e-39 166.8 179 62.6
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.2e-39 166.4 197 56.3
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 2.9e-39 166.0 165 52.7
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 2.9e-39 166.0 172 53.5
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 3.8e-39 165.6 197 47.2
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 4.9e-39 165.2 181 51.4
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 6.4e-39 164.9 147 60.5
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.4e-39 164.5 191 54.5
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 8.4e-39 164.5 194 46.9
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.4e-38 163.7 182 48.4
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.9e-38 163.3 165 52.1
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.9e-38 163.3 165 52.1
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 1.9e-38 163.3 165 51.5
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 4.1e-38 162.2 172 50.6
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 9.2e-38 161.0 165 52.1
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 9.2e-38 161.0 165 52.1
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 9.2e-38 161.0 197 46.2
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.2e-37 160.6 174 50.6
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.2e-37 160.6 164 51.8
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 2.1e-37 159.8 180 46.7
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 2.7e-37 159.5 169 50.9
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.0e-36 157.5 197 46.2
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.7e-36 156.8 177 48.6
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.2e-34 150.6 161 59.6
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 3.1e-33 146.0 169 58.6
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 2.6e-32 142.9 187 43.9
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 5.8e-32 141.7 247 36.0
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 6.4e-31 138.3 168 48.8
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 4.6e-29 132.1 173 42.2
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.0e-28 131.0 87 64.4
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 3.0e-28 129.4 99 67.7
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.3e-27 125.9 88 64.8
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 6.9e-25 118.2 164 51.8
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 2.6e-24 116.3 164 42.1
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 4.5e-24 115.5 86 65.1
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.1e-22 110.9 185 35.7
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 7.1e-22 108.2 199 34.2
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 6.0e-21 105.1 95 54.7
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.0e-20 104.4 144 40.3
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 1.1e-19 100.9 153 40.5
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 1.5e-19 100.5 139 53.2
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.9e-19 100.1 66 66.7
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 9.6e-19 97.8 108 46.3
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 4.8e-18 95.5 139 41.7
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 4.0e-17 92.4 59 69.5
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 7.6e-16 88.2 112 44.6
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 6.2e-10 68.6 173 31.8
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 1.4e-09 67.4 54 63.0
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 1.2e-08 64.3 69 40.6


User provided reference genes

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