Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.4e-132 476.1 216 100.0
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 4.0e-50 202.2 167 50.9
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 2.1e-35 153.3 194 41.2
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 8.1e-35 151.4 145 42.8
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 1.4e-34 150.6 148 44.6
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 3.4e-33 146.0 151 44.4
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 1.3e-32 144.1 160 40.0
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 2.2e-32 143.3 146 43.2
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 2.9e-32 142.9 151 43.7
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 3.8e-32 142.5 147 42.2
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 4.9e-32 142.1 166 41.0
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.4e-31 140.6 141 45.4
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 7.1e-31 138.3 214 33.6
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 2.1e-30 136.7 188 38.3
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 7.9e-30 134.8 211 33.6
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.3e-29 134.0 193 38.9
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 3.0e-29 132.9 129 43.4
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.0e-29 132.9 217 34.1
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 6.7e-29 131.7 195 36.9
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 8.7e-29 131.3 151 38.4
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 1.1e-28 131.0 120 47.5
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.9e-28 130.2 161 38.5
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 1.9e-28 130.2 144 42.4
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 5.6e-28 128.6 141 41.1
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 5.6e-28 128.6 141 41.1
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 7.4e-28 128.3 194 35.6
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.3e-27 127.5 141 41.1
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 1.3e-27 127.5 141 41.1
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 1.6e-27 127.1 187 35.8
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 2.8e-27 126.3 147 43.5
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.6e-27 125.9 155 38.1
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 8.1e-27 124.8 191 34.0
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.4e-26 124.0 171 38.0
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 1.4e-26 124.0 156 39.7
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 6.9e-26 121.7 148 39.2
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 1.2e-25 120.9 161 39.1
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 4.5e-25 119.0 205 35.1
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 5.8e-25 118.6 158 39.2
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 9.9e-25 117.9 191 33.5
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 2.9e-24 116.3 208 34.1
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 4.9e-24 115.5 164 36.0
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 6.4e-24 115.2 212 35.4
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 6.4e-24 115.2 208 34.1
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 6.4e-24 115.2 208 34.1
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 1.1e-23 114.4 183 36.1
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 5.5e-23 112.1 156 40.4
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 7.1e-23 111.7 163 35.0
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 7.1e-23 111.7 141 41.1
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 9.3e-23 111.3 141 39.7
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.6e-22 110.5 131 38.2
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 1.6e-22 110.5 183 37.2
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 2.7e-22 109.8 158 34.8
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 2.3e-21 106.7 146 36.3
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 3.9e-21 105.9 115 40.9
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 5.1e-21 105.5 150 34.0
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 8.7e-21 104.8 145 38.6
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 1.5e-20 104.0 148 34.5
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 1.9e-20 103.6 152 38.2
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 2.5e-20 103.2 174 32.8
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 3.3e-20 102.8 185 29.7
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 4.3e-20 102.4 101 43.6
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 4.3e-20 102.4 101 43.6
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 4.3e-20 102.4 192 34.9
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 5.6e-20 102.1 149 32.2
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 5.6e-20 102.1 152 37.5
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 5.6e-20 102.1 157 32.5
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 5.6e-20 102.1 151 37.1
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.3e-19 100.9 154 32.5
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 1.6e-19 100.5 160 33.1
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 2.8e-19 99.8 174 32.2
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 2.8e-19 99.8 115 39.1
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 4.8e-19 99.0 115 38.3
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 4.8e-19 99.0 154 32.5
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 8.1e-19 98.2 115 40.9
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 8.1e-19 98.2 115 40.9
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 8.1e-19 98.2 146 34.9
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 1.1e-18 97.8 111 38.7
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 1.1e-18 97.8 145 35.9
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.4e-18 97.4 115 40.0
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 1.4e-18 97.4 115 40.0
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 1.4e-18 97.4 154 31.8
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.4e-18 96.7 153 33.3
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 2.4e-18 96.7 158 31.0
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 3.1e-18 96.3 112 38.4
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 3.1e-18 96.3 108 41.7
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 3.1e-18 96.3 135 32.6
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.1e-18 96.3 163 33.1
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 4.0e-18 95.9 155 34.8
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 4.0e-18 95.9 152 31.6
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 6.9e-18 95.1 145 35.2
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 6.9e-18 95.1 171 29.2
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 6.9e-18 95.1 147 36.1
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 6.9e-18 95.1 229 24.5
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 9.0e-18 94.7 145 35.9
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 9.0e-18 94.7 148 31.8
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 9.0e-18 94.7 148 33.8
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.2e-17 94.4 134 33.6
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 1.2e-17 94.4 151 30.5
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.2e-17 94.4 151 31.8
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 1.5e-17 94.0 163 31.3
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 3.4e-17 92.8 193 30.6
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.4e-17 92.8 147 35.4
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 3.4e-17 92.8 134 33.6
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 4.5e-17 92.4 100 40.0
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 5.8e-17 92.0 98 42.9
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 7.6e-17 91.7 159 32.7
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 7.6e-17 91.7 146 32.9
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.3e-16 90.9 146 32.9
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 2.9e-16 89.7 129 34.9
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 2.9e-16 89.7 150 31.3
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 2.9e-16 89.7 102 40.2
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 3.8e-16 89.4 138 32.6
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 8.4e-16 88.2 114 37.7
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.4e-15 87.4 110 37.3
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 4.2e-15 85.9 132 33.3
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 5.5e-15 85.5 117 35.9
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 5.5e-15 85.5 116 35.3
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 7.1e-15 85.1 118 35.6
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 1.2e-14 84.3 139 32.4
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 2.7e-14 83.2 140 33.6
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 3.5e-14 82.8 104 38.5
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 7.9e-14 81.6 113 35.4
DCAR_008617 Daucus carota HOM05D007742 ORTHO05D004072 7.9e-14 81.6 142 31.7
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.3e-13 80.9 111 36.0
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 1.8e-13 80.5 121 32.2
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.3e-13 80.1 161 31.7
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.1e-12 77.8 148 28.4
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 4.3e-12 75.9 91 39.6
Lj7P618T64 Lonicera japonica HOM05D007742 ORTHO05D004072 4.1e-10 69.3 146 29.5
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 6.9e-10 68.6 86 38.4
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 5.9e-09 65.5 67 41.8
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 1.7e-08 63.9 88 35.2
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 3.8e-08 62.8 42 57.1
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 8.5e-08 61.6 69 36.2
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 8.5e-08 61.6 69 36.2
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 8.5e-08 61.6 80 36.2
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.9e-07 60.5 81 37.0
Dinv12439 Davidia involucrata HOM05D007742 ORTHO05D004072 2.5e-07 60.1 55 43.6
GSVIVG01032966001 Vitis vinifera HOM05D007742 ORTHO05D004072 2.5e-07 60.1 84 36.9
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 5.5e-07 58.9 61 39.3
ATR0582G234 Amborella trichopoda HOM05D007742 ORTHO05D004072 7.2e-07 58.5 99 31.3
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 1.2e-06 57.8 108 34.3
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 6.1e-06 55.5 92 31.5
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 6.1e-06 55.5 72 37.5


User provided reference genes

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