Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 4.9e-54 214.2 103 100.0
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 1.3e-30 136.3 67 98.5
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 1.7e-11 72.8 36 100.0
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 1.7e-11 72.8 36 100.0
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 6.6e-11 70.9 41 85.4
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 6.6e-11 70.9 41 85.4
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 8.7e-11 70.5 43 74.4
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 1.1e-10 70.1 42 81.0
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 1.5e-10 69.7 43 72.1
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 1.9e-10 69.3 40 80.0
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 1.9e-10 69.3 43 76.7
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 1.9e-10 69.3 43 74.4
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 2.5e-10 68.9 43 74.4
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 2.5e-10 68.9 38 86.8
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 3.3e-10 68.6 43 72.1
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 4.3e-10 68.2 40 87.5
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 5.6e-10 67.8 40 85.0
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 5.6e-10 67.8 40 85.0
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 5.6e-10 67.8 43 74.4
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 7.3e-10 67.4 43 74.4
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 7.3e-10 67.4 43 74.4
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 9.6e-10 67.0 60 58.3
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 9.6e-10 67.0 41 82.9
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 1.3e-09 66.6 41 75.6
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 1.3e-09 66.6 40 82.5
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.1e-09 65.9 41 78.0
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.1e-09 65.9 41 78.0
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 2.8e-09 65.5 43 74.4
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 2.8e-09 65.5 43 74.4
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 2.8e-09 65.5 43 74.4
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 2.8e-09 65.5 43 74.4
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 2.8e-09 65.5 43 74.4
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 3.6e-09 65.1 43 72.1
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 3.6e-09 65.1 40 85.0
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 3.6e-09 65.1 51 62.7
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 3.6e-09 65.1 44 70.5
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 3.6e-09 65.1 43 74.4
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 3.6e-09 65.1 40 80.0
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 3.6e-09 65.1 43 72.1
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 3.6e-09 65.1 41 75.6
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 3.6e-09 65.1 43 72.1
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 3.6e-09 65.1 40 80.0
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 3.6e-09 65.1 43 72.1
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 3.6e-09 65.1 40 72.5
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 3.6e-09 65.1 43 72.1
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 4.8e-09 64.7 41 75.6
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 4.8e-09 64.7 41 75.6
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 4.8e-09 64.7 40 77.5
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 6.2e-09 64.3 40 75.0
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 6.2e-09 64.3 42 71.4
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.2e-09 64.3 40 77.5
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 6.2e-09 64.3 40 75.0
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 6.2e-09 64.3 46 71.7
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 6.2e-09 64.3 40 75.0
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 6.2e-09 64.3 40 75.0
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 6.2e-09 64.3 40 75.0
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 6.2e-09 64.3 44 70.5
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 6.2e-09 64.3 40 75.0
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 8.1e-09 63.9 41 73.2
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 8.1e-09 63.9 40 75.0
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 8.1e-09 63.9 38 76.3
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 8.1e-09 63.9 41 73.2
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.1e-08 63.5 40 77.5
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.4e-08 63.2 40 77.5
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 1.4e-08 63.2 41 73.2
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 1.4e-08 63.2 41 73.2
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 1.4e-08 63.2 35 88.6
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 1.4e-08 63.2 35 88.6
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 1.4e-08 63.2 35 88.6
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 1.4e-08 63.2 35 80.0
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 1.4e-08 63.2 40 72.5
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 1.8e-08 62.8 36 77.8
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.8e-08 62.8 40 75.0
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 1.8e-08 62.8 35 85.7
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 1.8e-08 62.8 35 85.7
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 1.8e-08 62.8 39 76.9
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 2.4e-08 62.4 43 67.4
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 3.1e-08 62.0 41 73.2
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 3.1e-08 62.0 40 77.5
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 5.3e-08 61.2 46 69.6
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 6.9e-08 60.8 40 70.0
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 6.9e-08 60.8 35 82.9
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 9.0e-08 60.5 36 75.0
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 9.0e-08 60.5 36 75.0
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 9.0e-08 60.5 36 75.0
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 9.0e-08 60.5 36 75.0
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 9.0e-08 60.5 40 75.0
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 9.0e-08 60.5 43 67.4
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.2e-07 60.1 35 77.1
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 1.5e-07 59.7 35 77.1
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 1.5e-07 59.7 51 54.9
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.5e-07 59.7 35 80.0
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 2.0e-07 59.3 35 82.9
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 2.6e-07 58.9 51 54.9
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 2.6e-07 58.9 40 70.0
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 3.4e-07 58.5 43 65.1
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 3.4e-07 58.5 51 56.9
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.4e-07 58.5 40 70.0
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.5e-07 58.2 51 56.9
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 5.8e-07 57.8 51 52.9
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 5.8e-07 57.8 51 52.9
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 5.8e-07 57.8 51 52.9
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 5.8e-07 57.8 51 52.9
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 5.8e-07 57.8 51 52.9
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 5.8e-07 57.8 51 52.9
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 5.8e-07 57.8 51 52.9
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 7.6e-07 57.4 40 70.0
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 9.9e-07 57.0 51 52.9
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 9.9e-07 57.0 51 54.9
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 9.9e-07 57.0 51 54.9
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 9.9e-07 57.0 51 54.9
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 9.9e-07 57.0 51 54.9
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 1.3e-06 56.6 41 65.9
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.3e-06 56.6 51 51.0
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.7e-06 56.2 51 52.9
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.7e-06 56.2 51 51.0
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.2e-06 55.8 32 75.0
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 2.2e-06 55.8 51 52.9
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.9e-06 55.5 40 67.5
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 2.9e-06 55.5 51 51.0
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 2.9e-06 55.5 32 75.0
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 2.9e-06 55.5 51 54.9
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 2.9e-06 55.5 51 52.9
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 3.8e-06 55.1 51 52.9
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 3.8e-06 55.1 51 54.9
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 3.8e-06 55.1 32 71.9
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 3.8e-06 55.1 32 75.0
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 3.8e-06 55.1 51 52.9
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 3.8e-06 55.1 51 52.9
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 3.8e-06 55.1 51 52.9
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 4.9e-06 54.7 53 47.2
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 4.9e-06 54.7 46 54.3
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 4.9e-06 54.7 51 52.9
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 4.9e-06 54.7 51 52.9
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 4.9e-06 54.7 51 52.9
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 6.4e-06 54.3 51 54.9
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 6.4e-06 54.3 51 54.9
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 6.4e-06 54.3 51 54.9
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 6.4e-06 54.3 51 54.9
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 6.4e-06 54.3 51 54.9
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 6.4e-06 54.3 51 54.9
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 6.4e-06 54.3 51 54.9
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 6.4e-06 54.3 51 49.0
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 6.4e-06 54.3 51 49.0
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 6.4e-06 54.3 51 52.9
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 6.4e-06 54.3 60 50.0
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.4e-06 54.3 57 50.9
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.4e-06 54.3 57 50.9
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 8.4e-06 53.9 51 51.0
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 8.4e-06 53.9 53 52.8
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 8.4e-06 53.9 43 62.8
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 8.4e-06 53.9 51 51.0
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 8.4e-06 53.9 32 71.9
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 8.4e-06 53.9 32 71.9
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 8.4e-06 53.9 51 52.9
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 8.4e-06 53.9 51 52.9


User provided reference genes

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