Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As1g23079 Beta vulgaris HOM05D001787 ORTHO05D003488 2.0e-74 282.7 185 100.0
EL10Ac7g16970 Beta vulgaris HOM05D000810 ORTHO05D014916 2.5e-24 116.3 155 51.6
EL10Ac2g03801 Beta vulgaris HOM05D001787 ORTHO05D003488 3.4e-13 79.3 40 97.5
EL10Ac2g02789 Beta vulgaris HOM05D001787 ORTHO05D003488 7.5e-13 78.2 40 97.5
Sc06g0001080 Simmondsia chinensis HOM05D001787 ORTHO05D003488 8.3e-12 74.7 41 87.8
Ah.10g034000 Amaranthus hybridus HOM05D001787 ORTHO05D003488 1.8e-11 73.6 40 87.5
EL10Ac5g10765 Beta vulgaris HOM05D001787 ORTHO05D088741 2.4e-11 73.2 165 37.6
AUR62009096 Chenopodium quinoa HOM05D001787 ORTHO05D003488 5.4e-11 72.0 40 87.5
AUR62020575 Chenopodium quinoa HOM05D001787 ORTHO05D003488 7.0e-11 71.6 40 85.0
Gorai.009G041600 Gossypium raimondii HOM05D001787 ORTHO05D003488 1.2e-10 70.9 63 58.7
EL10Ac9g22941 Beta vulgaris HOM05D002658 ORTHO05D003000 2.0e-10 70.1 42 90.5
Lj7C240T12 Lonicera japonica HOM05D001787 ORTHO05D003488 2.0e-10 70.1 53 67.9
Atru.chr7.1870 Acer truncatum HOM05D001787 ORTHO05D003488 2.7e-10 69.7 40 82.5
Thecc.09G060900 Theobroma cacao HOM05D001787 ORTHO05D003488 2.7e-10 69.7 40 82.5
Ciclev10008710m.g Citrus clementina HOM05D001787 ORTHO05D003488 3.5e-10 69.3 40 77.5
COL.COLO4_21119 Corchorus olitorius HOM05D001787 ORTHO05D003488 3.5e-10 69.3 39 84.6
ECA234G2841 Erigeron canadensis HOM05D001787 ORTHO05D003488 3.5e-10 69.3 40 85.0
Potri.006G222900 Populus trichocarpa HOM05D001787 ORTHO05D003488 3.5e-10 69.3 40 85.0
Solyc08g062190.3 Solanum lycopersicum HOM05D001787 ORTHO05D003488 3.5e-10 69.3 40 85.0
HanXRQChr10g0303441 Helianthus annuus HOM05D001787 ORTHO05D003488 4.5e-10 68.9 40 85.0
MD15G1052500 Malus domestica HOM05D001787 ORTHO05D003488 4.5e-10 68.9 44 79.5
PGR031G0779 Punica granatum HOM05D001787 ORTHO05D003488 4.5e-10 68.9 40 82.5
arahy.Tifrunner.gnm1.ann1.0IZ382 Arachis hypogaea HOM05D001787 ORTHO05D003488 5.9e-10 68.6 43 76.7
Gohir.A07G020600 Gossypium hirsutum HOM05D001787 ORTHO05D003488 5.9e-10 68.6 40 82.5
Gohir.D05G041100 Gossypium hirsutum HOM05D001787 ORTHO05D003488 5.9e-10 68.6 63 57.1
Gorai.001G021100 Gossypium raimondii HOM05D001787 ORTHO05D003488 5.9e-10 68.6 40 82.5
Lj7A234G38 Lonicera japonica HOM05D001787 ORTHO05D003488 5.9e-10 68.6 39 84.6
MBI19_g20415_MAGBIO Magnolia biondii HOM05D001787 ORTHO05D003488 5.9e-10 68.6 40 82.5
THA.LOC104811224 Tarenaya hassleriana HOM05D001787 ORTHO05D003488 5.9e-10 68.6 40 82.5
ATR0598G171 Amborella trichopoda HOM05D001787 ORTHO05D003488 7.7e-10 68.2 40 85.0
A03p05370 Brassica napus HOM05D001787 ORTHO05D003488 7.7e-10 68.2 40 80.0
BraA03t09875Z Brassica rapa HOM05D001787 ORTHO05D003488 7.7e-10 68.2 40 80.0
Gohir.A05G039600 Gossypium hirsutum HOM05D001787 ORTHO05D003488 7.7e-10 68.2 40 80.0
Prupe.1G406400 Prunus persica HOM05D001787 ORTHO05D003488 7.7e-10 68.2 40 82.5
CANSAT25G0744 Cannabis sativa HOM05D001787 ORTHO05D003488 1.0e-09 67.8 40 82.5
Dinv41832 Davidia involucrata HOM05D001787 ORTHO05D003488 1.0e-09 67.8 40 82.5
Dinv42368 Davidia involucrata HOM05D001787 ORTHO05D003488 1.0e-09 67.8 40 82.5
Lsat_1_v5_gn_5_82521 Lactuca sativa HOM05D001787 ORTHO05D003488 1.0e-09 67.8 40 82.5
Nitab4.5_0004953g0080 Nicotiana tabacum HOM05D001787 ORTHO05D003488 1.0e-09 67.8 40 82.5
Sopen08g017770 Solanum pennellii HOM05D001787 ORTHO05D003488 1.3e-09 67.4 40 82.5
GSVIVG01035444001 Vitis vinifera HOM05D001787 ORTHO05D003488 1.3e-09 67.4 40 80.0
Aa31LG3G15190 Aethionema arabicum HOM05D001787 ORTHO05D003488 1.7e-09 67.0 40 80.0
AUR62025177 Chenopodium quinoa HOM05D001787 ORTHO05D003488 1.7e-09 67.0 46 67.4
Duzib187G1874 Durio zibethinus HOM05D001787 ORTHO05D003488 1.7e-09 67.0 40 80.0
FAN15G0901 Fragaria x ananassa HOM05D001787 ORTHO05D003488 1.7e-09 67.0 40 82.5
FAN20G1398 Fragaria x ananassa HOM05D001787 ORTHO05D003488 1.7e-09 67.0 40 82.5
FAN27G0678 Fragaria x ananassa HOM05D001787 ORTHO05D003488 1.7e-09 67.0 40 82.5
Gohir.D07G020300 Gossypium hirsutum HOM05D001787 ORTHO05D003488 1.7e-09 67.0 40 80.0
MD08G1069600 Malus domestica HOM05D001787 ORTHO05D003488 1.7e-09 67.0 39 84.6
Sabra06G0172300 Salix brachista HOM05D001787 ORTHO05D003488 1.7e-09 67.0 39 84.6
Sed0025039 Sechium edule HOM05D001787 ORTHO05D003488 1.7e-09 67.0 40 77.5
vmacro06316 Vaccinium macrocarpon HOM05D001787 ORTHO05D003488 1.7e-09 67.0 40 82.5
ClCG05G015620 Citrullus lanatus HOM05D001787 ORTHO05D003488 2.3e-09 66.6 40 77.5
MELO3C016902.2 Cucumis melo HOM05D001787 ORTHO05D003488 2.3e-09 66.6 40 77.5
CsaV3_4G035950 Cucumis sativus L. HOM05D001787 ORTHO05D003488 2.3e-09 66.6 40 77.5
DCAR_000814 Daucus carota HOM05D001787 ORTHO05D003488 2.3e-09 66.6 40 82.5
FvH4_2g31270 Fragaria vesca HOM05D001787 ORTHO05D003488 2.3e-09 66.6 40 82.5
FAN24G0956 Fragaria x ananassa HOM05D001787 ORTHO05D003488 2.3e-09 66.6 40 82.5
Nitab4.5_0013731g0010 Nicotiana tabacum HOM05D001787 ORTHO05D003488 2.3e-09 66.6 40 80.0
Peaxi162Scf00809g00036 Petunia axillaris HOM05D001787 ORTHO05D003488 2.3e-09 66.6 40 80.0
Rhsim03G0230100 Rhododendron simsii HOM05D001787 ORTHO05D003488 2.3e-09 66.6 40 82.5
Atru.chr7.1868 Acer truncatum HOM05D001787 ORTHO05D003488 2.9e-09 66.2 40 80.0
Actinidia25700 Actinidia chinensis HOM05D001787 ORTHO05D003488 2.9e-09 66.2 40 80.0
AL6G22830 Arabidopsis lyrata HOM05D001787 ORTHO05D003488 2.9e-09 66.2 40 77.5
AT5G12040 Arabidopsis thaliana HOM05D001787 ORTHO05D003488 2.9e-09 66.2 40 77.5
C03p06190 Brassica napus HOM05D001787 ORTHO05D003488 2.9e-09 66.2 40 77.5
BolC3t13126H Brassica oleracea HOM05D001787 ORTHO05D003488 2.9e-09 66.2 40 77.5
Duzib150G0917 Durio zibethinus HOM05D001787 ORTHO05D003488 2.9e-09 66.2 40 80.0
Hma1.2p1_0231F.1_g097470 Hydrangea macrophylla HOM05D001787 ORTHO05D003488 2.9e-09 66.2 40 77.5
Manes.16G084000 Manihot esculenta HOM05D001787 ORTHO05D003488 2.9e-09 66.2 40 82.5
PSO210G6170 Papaver somniferum HOM05D001787 ORTHO05D003488 2.9e-09 66.2 40 80.0
CSS0029585 Camellia sinensis var. sinensis HOM05D001787 ORTHO05D003488 3.8e-09 65.9 39 82.1
Carub.0006s1056 Capsella rubella HOM05D001787 ORTHO05D003488 3.8e-09 65.9 40 77.5
SGA_v2.0_scaffold163G38003 Striga asiatica HOM05D001787 ORTHO05D003488 3.8e-09 65.9 40 80.0
arahy.Tifrunner.gnm1.ann1.DZ6J9T Arachis hypogaea HOM05D001787 ORTHO05D003488 5.0e-09 65.5 39 79.5
MSTRG.1688 Avicennia marina HOM05D001787 ORTHO05D003488 5.0e-09 65.5 40 77.5
CARHR201090 Cardamine hirsuta HOM05D001787 ORTHO05D003488 5.0e-09 65.5 40 77.5
RcHm_v2.0_Chr6g0311531 Rosa chinensis HOM05D001787 ORTHO05D003488 5.0e-09 65.5 40 80.0
Sp6g31560 Schrenkiella parvula HOM05D001787 ORTHO05D003488 5.0e-09 65.5 40 77.5
Cc08_g01340 Coffea canephora HOM05D001787 ORTHO05D003488 6.5e-09 65.1 39 82.1
Haze_18124 Corylus avellana HOM05D001787 ORTHO05D003488 6.5e-09 65.1 39 79.5
Lj7A682G50 Lonicera japonica HOM05D001787 ORTHO05D003488 6.5e-09 65.1 40 77.5
Nn8g38721 Nelumbo nucifera HOM05D001787 ORTHO05D003488 6.5e-09 65.1 40 77.5
Oeu003980.1 Olea europaea HOM05D001787 ORTHO05D003488 6.5e-09 65.1 40 77.5
TWI63G1842 Tripterygium wilfordii HOM05D001787 ORTHO05D003488 6.5e-09 65.1 40 77.5
CAN.G179.21 Capsicum annuum HOM05D001787 ORTHO05D003488 8.6e-09 64.7 40 77.5
CiPaw.15G090400 Carya illinoinensis HOM05D001787 ORTHO05D003488 8.6e-09 64.7 40 77.5
Thhalv10013923m.g Eutrema salsugineum HOM05D001787 ORTHO05D003488 8.6e-09 64.7 40 77.5
MD15G1052400 Malus domestica HOM05D001787 ORTHO05D003488 8.6e-09 64.7 44 75.0
Phvul.009G081000 Phaseolus vulgaris HOM05D001787 ORTHO05D003488 8.6e-09 64.7 40 77.5
TAR624G1095 Trochodendron aralioides HOM05D001787 ORTHO05D003488 8.6e-09 64.7 40 77.5
TAR633G0053 Trochodendron aralioides HOM05D001787 ORTHO05D003488 8.6e-09 64.7 40 77.5
Hund08712 Selenicereus undatus HOM05D001787 ORTHO05D003488 1.1e-08 64.3 40 75.0
TWI34G1008 Tripterygium wilfordii HOM05D001787 ORTHO05D003488 1.1e-08 64.3 40 77.5
VMungo1309G1305 Vigna mungo HOM05D001787 ORTHO05D003488 1.1e-08 64.3 40 77.5
AUR62028997 Chenopodium quinoa HOM05D001787 ORTHO05D003488 1.5e-08 63.9 40 75.0
Cc06_g11880 Coffea canephora HOM05D001787 ORTHO05D003488 1.5e-08 63.9 39 79.5
Duzib168G1000 Durio zibethinus HOM05D001787 ORTHO05D003488 1.5e-08 63.9 40 77.5
Lalb_Chr11g0063301 Lupinus albus HOM05D001787 ORTHO05D003488 1.5e-08 63.9 40 77.5
Medtr3g104850 Medicago truncatula HOM05D001787 ORTHO05D003488 1.5e-08 63.9 39 76.9
Nn6g35589 Nelumbo nucifera HOM05D001787 ORTHO05D003488 1.5e-08 63.9 49 67.3
vmacro06319 Vaccinium macrocarpon HOM05D001787 ORTHO05D003488 1.5e-08 63.9 40 80.0
PSO421G0350 Papaver somniferum HOM05D001787 ORTHO05D003488 1.9e-08 63.5 40 75.0
Hund03302 Selenicereus undatus HOM05D001787 ORTHO05D003488 1.9e-08 63.5 40 77.5
Zm00001eb402000 Zea mays HOM05D001787 ORTHO05D003488 1.9e-08 63.5 49 67.3
Aqoxy7G01096 Aquilegia oxysepala HOM05D001787 ORTHO05D003488 2.5e-08 63.2 40 75.0
Migut.E01575 Erythranthe guttata HOM05D001787 ORTHO05D003488 2.5e-08 63.2 40 77.5
PSO063G6311 Papaver somniferum HOM05D001787 ORTHO05D003488 2.5e-08 63.2 40 75.0
SalBow1G1427 Salvia bowleyana HOM05D001787 ORTHO05D003488 2.5e-08 63.2 40 72.5
Cpa.g.sc126.42 Carica papaya HOM05D001787 ORTHO05D003488 3.2e-08 62.8 40 75.0
SEGI_18391 Sequoiadendron giganteum HOM05D001787 ORTHO05D003488 3.2e-08 62.8 43 74.4
EL10Ac8g19134 Beta vulgaris HOM05D001787 ORTHO05D003488 4.2e-08 62.4 40 75.0
Eucgr.C00706 Eucalyptus grandis HOM05D001787 ORTHO05D003488 4.2e-08 62.4 40 75.0
Psat5g035080 Pisum sativum HOM05D001787 ORTHO05D003488 4.2e-08 62.4 40 75.0
Solyc07g041280.4 Solanum lycopersicum HOM05D001787 ORTHO05D003488 4.2e-08 62.4 40 72.5
Nitab4.5_0002842g0080 Nicotiana tabacum HOM05D001787 ORTHO05D003488 5.5e-08 62.0 39 74.4
unitig_85.g27252 Utricularia gibba HOM05D001787 ORTHO05D003488 5.5e-08 62.0 40 75.0
Migut.L01543 Erythranthe guttata HOM05D001787 ORTHO05D003488 7.2e-08 61.6 40 72.5
Nitab4.5_0010890g0010 Nicotiana tabacum HOM05D001787 ORTHO05D003488 7.2e-08 61.6 39 74.4
Sed0024349 Sechium edule HOM05D001787 ORTHO05D003488 7.2e-08 61.6 40 70.0
TPR.G3515 Trifolium pratense HOM05D001787 ORTHO05D003488 7.2e-08 61.6 39 74.4
Zm00001eb005710 Zea mays HOM05D001787 ORTHO05D003488 7.2e-08 61.6 40 75.0
Actinidia38464 Actinidia chinensis HOM05D001787 ORTHO05D003488 9.5e-08 61.2 40 72.5
Hund05745 Selenicereus undatus HOM05D001787 ORTHO05D003488 9.5e-08 61.2 41 73.2
Actinidia29918 Actinidia chinensis HOM05D001787 ORTHO05D003488 1.2e-07 60.8 40 72.5
Peaxi162Scf00219g00512 Petunia axillaris HOM05D001787 ORTHO05D003488 1.2e-07 60.8 39 71.8
Aqoxy7G01090 Aquilegia oxysepala HOM05D001787 ORTHO05D003488 1.6e-07 60.5 40 75.0
MSTRG.10525 Avicennia marina HOM05D001787 ORTHO05D003488 1.6e-07 60.5 40 67.5
Sc18g0002390 Simmondsia chinensis HOM05D001787 ORTHO05D003488 1.6e-07 60.5 40 70.0
PGSC0003DMG400019574 Solanum tuberosum HOM05D001787 ORTHO05D003488 1.6e-07 60.5 40 70.0
vmacro01705 Vaccinium macrocarpon HOM05D002143 ORTHO05D002260 1.6e-07 60.5 40 75.0
A10p25730 Brassica napus HOM05D001787 ORTHO05D003488 2.1e-07 60.1 39 71.8
BraA10t44639Z Brassica rapa HOM05D001787 ORTHO05D003488 2.1e-07 60.1 39 71.8
SGA_v2.0_scaffold21G09471 Striga asiatica HOM05D001787 ORTHO05D003488 2.1e-07 60.1 40 67.5
THA.LOC104811223 Tarenaya hassleriana HOM05D001787 ORTHO05D003488 2.1e-07 60.1 40 72.5
C09p64810 Brassica napus HOM05D001787 ORTHO05D003488 2.8e-07 59.7 39 71.8
BolC9t59312H Brassica oleracea HOM05D001787 ORTHO05D003488 2.8e-07 59.7 39 71.8
Glyma.06G055100 Glycine max HOM05D001787 ORTHO05D003488 2.8e-07 59.7 39 74.4
Os03g0175600 Oryza sativa ssp. japonica HOM05D001787 ORTHO05D003488 2.8e-07 59.7 40 75.0
Pp3c16_17560 Physcomitrium patens HOM05D001787 ORTHO05D003488 2.8e-07 59.7 42 64.3
vmacro15022 Vaccinium macrocarpon HOM05D001787 ORTHO05D003488 2.8e-07 59.7 53 58.5
Lj1g0020987 Lotus japonicus HOM05D001787 ORTHO05D003488 3.6e-07 59.3 40 75.0
SalBow1G2786 Salvia bowleyana HOM05D001787 ORTHO05D003488 3.6e-07 59.3 39 69.2
HPP92_007990 Vanilla planifolia HOM05D001787 ORTHO05D003488 3.6e-07 59.3 40 75.0
Dinv04033 Davidia involucrata HOM05D001787 ORTHO05D003488 4.7e-07 58.9 41 70.7
Mapoly0001s0148 Marchantia polymorpha HOM05D001787 ORTHO05D003488 6.1e-07 58.5 41 68.3
PSO210G0001 Papaver somniferum HOM05D001787 ORTHO05D003488 6.1e-07 58.5 40 70.0
Migut.I01064 Erythranthe guttata HOM05D001787 ORTHO05D003488 8.0e-07 58.2 40 67.5
TAR636G0342 Trochodendron aralioides HOM05D001787 ORTHO05D003488 8.0e-07 58.2 43 62.8
QL06p008188 Quercus lobata HOM05D001787 ORTHO05D003488 1.0e-06 57.8 39 69.2
Atru.chr1.3910 Acer truncatum HOM05D001787 ORTHO05D003488 1.4e-06 57.4 40 67.5
PSO063G0122 Papaver somniferum HOM05D001787 ORTHO05D003488 1.4e-06 57.4 40 67.5
CSS0046300 Camellia sinensis var. sinensis HOM05D001787 ORTHO05D003488 1.8e-06 57.0 40 70.0
EL10Ac1g00620 Beta vulgaris HOM05D001787 ORTHO05D003488 2.3e-06 56.6 40 65.0
BcaC03g13408 Brassica carinata HOM05D001787 ORTHO05D003488 3.0e-06 56.2 42 69.0
C02p05580 Brassica napus HOM05D001787 ORTHO05D003488 3.0e-06 56.2 42 69.0
AUR62009876 Chenopodium quinoa HOM05D001787 ORTHO05D003488 3.0e-06 56.2 40 67.5
Cre11.g467717 Chlamydomonas reinhardtii HOM05D001787 ORTHO05D003488 3.0e-06 56.2 38 73.7
Cre12.g507558 Chlamydomonas reinhardtii HOM05D001787 ORTHO05D003488 3.0e-06 56.2 38 73.7
Actinidia32179 Actinidia chinensis HOM05D001787 ORTHO05D003488 4.0e-06 55.8 40 70.0
Thecc.05G144000 Theobroma cacao HOM05D001787 ORTHO05D003488 4.0e-06 55.8 37 73.0
TAR383G0339 Trochodendron aralioides HOM05D001787 ORTHO05D003488 4.0e-06 55.8 40 65.0
Pp3c5_22250 Physcomitrium patens HOM05D001787 ORTHO05D003488 6.8e-06 55.1 42 61.9
SMO116G0031 Selaginella moellendorffii HOM05D001787 ORTHO05D003488 6.8e-06 55.1 40 62.5
SMO269G0004 Selaginella moellendorffii HOM05D001787 ORTHO05D003488 6.8e-06 55.1 40 62.5


User provided reference genes

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