Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 8.7e-221 770.0 392 100.0
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.7e-145 519.2 389 72.2
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 3.5e-145 518.8 389 71.7
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 2.4e-133 479.6 368 70.4
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.2e-129 467.2 388 65.7
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 3.5e-129 465.7 386 63.0
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 6.0e-129 464.9 385 64.7
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.0e-128 462.6 372 66.4
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.9e-128 462.2 390 62.8
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 8.7e-128 461.1 386 64.0
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 8.7e-128 461.1 388 65.2
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.5e-127 460.3 390 62.8
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.9e-127 459.9 386 65.0
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.9e-127 459.9 388 63.7
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.9e-127 459.9 388 64.2
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.3e-127 459.1 390 64.6
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 4.3e-127 458.8 367 64.0
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 9.6e-127 457.6 386 64.0
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 9.6e-127 457.6 388 65.2
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.3e-126 457.2 388 63.4
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.6e-126 456.8 388 63.1
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 2.8e-126 456.1 386 63.0
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.8e-126 455.3 386 63.7
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 6.2e-126 454.9 390 63.3
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.1e-125 454.1 385 61.3
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.4e-125 453.8 390 62.3
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.4e-125 453.8 388 62.4
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 9.0e-125 451.1 387 62.8
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 1.5e-124 450.3 393 61.8
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.5e-124 450.3 388 63.1
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 4.5e-124 448.7 393 62.1
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 4.5e-124 448.7 391 61.4
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 7.6e-124 448.0 388 63.1
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 2.9e-123 446.0 388 64.4
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 4.9e-123 445.3 390 62.3
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 4.9e-123 445.3 393 62.3
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 6.4e-123 444.9 385 60.3
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 1.4e-122 443.7 387 62.8
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.4e-122 443.7 390 62.1
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 4.2e-122 442.2 390 61.8
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 4.2e-122 442.2 384 63.0
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 5.5e-122 441.8 386 63.0
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 7.1e-122 441.4 388 61.3
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 9.3e-122 441.0 390 61.5
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 2.1e-121 439.9 391 62.1
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 6.0e-121 438.3 386 62.2
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 7.9e-121 438.0 388 61.6
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 3.0e-120 436.0 386 61.1
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 5.1e-120 435.3 388 61.3
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 8.7e-120 434.5 388 60.8
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 8.7e-120 434.5 382 62.0
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.5e-119 433.7 390 61.3
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 4.3e-119 432.2 386 61.4
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 5.6e-119 431.8 391 59.6
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.6e-119 431.0 385 60.5
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 3.7e-118 429.1 421 57.5
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 3.1e-117 426.0 389 61.4
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 3.1e-117 426.0 388 59.8
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 4.0e-117 425.6 388 60.3
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 5.3e-117 425.2 393 58.5
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.5e-116 423.7 401 57.6
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 2.0e-116 423.3 388 59.0
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 2.6e-116 422.9 391 58.3
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 3.4e-116 422.5 385 60.0
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 5.8e-116 421.8 385 58.4
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 3.8e-115 419.1 399 57.6
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.9e-115 418.7 383 60.3
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 4.9e-115 418.7 364 64.6
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.1e-114 417.5 383 60.3
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 1.4e-114 417.2 390 57.2
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 3.2e-114 416.0 420 55.5
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 4.2e-114 415.6 363 63.4
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 5.5e-114 415.2 393 56.5
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 5.5e-114 415.2 383 60.3
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.2e-113 414.1 384 59.4
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 2.1e-113 413.3 389 56.8
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.0e-112 411.0 390 57.7
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.0e-112 411.0 383 59.3
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 1.0e-112 411.0 388 57.0
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.8e-112 410.2 416 56.5
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 5.1e-112 408.7 387 55.8
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.1e-111 407.5 391 57.5
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 5.7e-111 405.2 386 58.8
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.6e-110 403.7 378 58.2
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 4.8e-110 402.1 390 56.2
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.8e-109 400.2 393 56.7
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 9.0e-109 397.9 366 61.7
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.4e-108 396.0 280 71.8
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.3e-107 394.0 390 56.4
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 4.2e-106 389.0 366 57.1
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 1.6e-105 387.1 401 54.6
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 1.6e-105 387.1 387 54.8
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 2.7e-105 386.3 392 55.4
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 2.7e-105 386.3 392 53.8
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 2.7e-105 386.3 392 53.8
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 2.3e-104 383.3 384 55.2
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 6.7e-104 381.7 265 72.5
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 8.7e-104 381.3 366 56.3
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 2.5e-103 379.8 389 53.7
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 4.3e-103 379.0 385 54.5
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.6e-102 377.1 389 53.2
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.6e-102 377.1 389 53.2
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.6e-102 377.1 389 53.2
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 2.8e-102 376.3 392 54.1
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 6.3e-102 375.2 389 54.5
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 6.3e-102 375.2 389 54.5
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 1.8e-101 373.6 393 54.5
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.8e-101 373.6 388 55.7
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 5.3e-101 372.1 389 54.0
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 5.3e-101 372.1 389 53.5
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 5.3e-101 372.1 389 53.5
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 5.3e-101 372.1 388 56.4
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 2.2e-99 366.7 390 52.1
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 5.0e-99 365.5 389 53.0
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 9.4e-98 361.3 389 52.4
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.2e-97 360.9 388 51.5
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 7.9e-97 358.2 275 64.7
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 8.8e-96 354.8 401 53.4
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 4.4e-95 352.4 390 51.3
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 1.3e-94 350.9 352 55.7
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 7.7e-92 341.7 389 47.6
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.9e-90 337.0 362 52.5
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 7.2e-90 335.1 394 47.0
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 3.6e-89 332.8 413 46.5
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 1.0e-88 331.3 351 54.7
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 1.1e-87 327.8 392 46.9
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 3.0e-80 303.1 334 51.8
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 6.7e-80 302.0 397 43.6
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 9.1e-77 291.6 408 44.6
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 4.8e-70 269.2 193 73.1
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.4e-69 266.9 372 47.3
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.4e-69 266.9 192 74.5
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.6e-68 264.2 294 48.6
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 4.7e-65 252.7 289 50.9
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.0e-64 251.5 172 76.2
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 2.6e-63 246.9 348 44.5
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.6e-55 220.3 214 57.5
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 9.5e-50 201.8 376 35.1
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 6.8e-48 195.7 260 45.0
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 9.2e-45 185.3 281 38.4
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.2e-41 174.9 337 37.7
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.2e-41 174.9 118 65.3
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.6e-41 174.5 264 42.0
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 7.3e-34 149.1 238 39.1
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 4.4e-31 139.8 126 61.9
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.6e-27 125.9 80 70.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 2.5e-26 124.0 158 44.3
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 3.3e-26 123.6 126 55.6
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 6.9e-24 115.9 260 32.7
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 6.0e-20 102.8 78 61.5
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 6.0e-20 102.8 78 61.5
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 5.8e-15 86.3 283 26.9
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 8.4e-14 82.4 51 82.4
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 3.5e-12 77.0 74 44.6
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 7.9e-12 75.9 72 61.1
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 4.3e-10 70.1 53 71.7
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 2.1e-09 67.8 44 75.0
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 8.1e-09 65.9 60 55.0
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 1.7e-06 58.2 152 29.6
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 3.8e-06 57.0 72 44.4
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.8e-06 57.0 72 44.4
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 6.4e-06 56.2 232 25.4
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 6.4e-06 56.2 232 25.4
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 6.4e-06 56.2 232 25.4
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 6.4e-06 56.2 232 25.9
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 8.4e-06 55.8 232 25.9


User provided reference genes

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