Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 6.9e-69 263.8 132 100.0
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 6.5e-11 71.2 37 89.2
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 6.5e-11 71.2 37 89.2
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 2.5e-10 69.3 37 83.8
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 4.2e-10 68.6 37 81.1
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 4.2e-10 68.6 44 70.5
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 4.2e-10 68.6 37 81.1
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 4.2e-10 68.6 37 81.1
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.2e-10 67.8 37 78.4
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 9.4e-10 67.4 37 81.1
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 9.4e-10 67.4 37 78.4
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.2e-09 67.0 37 81.1
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 1.2e-09 67.0 37 78.4
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.6e-09 66.6 37 78.4
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.6e-09 66.6 37 78.4
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 2.1e-09 66.2 37 78.4
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.7e-09 65.9 37 75.7
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.7e-09 65.9 44 65.9
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 2.7e-09 65.9 37 75.7
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 2.7e-09 65.9 37 75.7
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 3.6e-09 65.5 37 75.7
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 3.6e-09 65.5 37 75.7
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.6e-09 65.5 37 78.4
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.6e-09 65.5 37 78.4
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.7e-09 65.1 37 78.4
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.7e-09 65.1 37 78.4
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 4.7e-09 65.1 37 75.7
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 4.7e-09 65.1 38 71.1
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 6.1e-09 64.7 37 75.7
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 6.1e-09 64.7 37 75.7
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 6.1e-09 64.7 37 78.4
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 6.1e-09 64.7 37 81.1
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 6.1e-09 64.7 37 75.7
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 8.0e-09 64.3 37 73.0
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 8.0e-09 64.3 38 73.7
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 8.0e-09 64.3 37 73.0
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.0e-09 64.3 37 75.7
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 8.0e-09 64.3 41 70.7
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.0e-08 63.9 37 73.0
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 1.0e-08 63.9 37 75.7
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.0e-08 63.9 37 73.0
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.0e-08 63.9 37 73.0
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.0e-08 63.9 37 75.7
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.4e-08 63.5 37 73.0
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.4e-08 63.5 37 73.0
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.8e-08 63.2 37 75.7
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 2.3e-08 62.8 37 75.7
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 3.0e-08 62.4 37 73.0
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 3.0e-08 62.4 38 71.1
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 3.0e-08 62.4 37 73.0
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 4.0e-08 62.0 37 70.3
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 4.0e-08 62.0 38 68.4
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 4.0e-08 62.0 38 68.4
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.0e-08 62.0 37 70.3
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.0e-08 62.0 37 70.3
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 5.2e-08 61.6 38 71.1
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 8.8e-08 60.8 35 68.6
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 8.8e-08 60.8 37 70.3
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 8.8e-08 60.8 37 70.3
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 1.2e-07 60.5 37 70.3
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 1.2e-07 60.5 37 67.6
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.2e-07 60.5 37 67.6
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.5e-07 60.1 38 65.8
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.5e-07 60.1 38 65.8
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 2.0e-07 59.7 37 70.3
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 2.0e-07 59.7 38 65.8
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 2.0e-07 59.7 38 65.8
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 2.0e-07 59.7 37 67.6
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 2.6e-07 59.3 37 70.3
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 3.3e-07 58.9 37 70.3
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 3.3e-07 58.9 37 67.6
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 4.4e-07 58.5 37 67.6
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 5.7e-07 58.2 37 67.6
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 5.7e-07 58.2 37 67.6
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 5.7e-07 58.2 37 67.6
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 7.5e-07 57.8 37 67.6
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 7.5e-07 57.8 37 70.3
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 7.5e-07 57.8 38 71.1
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 7.5e-07 57.8 37 64.9
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 9.7e-07 57.4 37 64.9
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.3e-06 57.0 38 65.8
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.3e-06 57.0 38 68.4
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.3e-06 57.0 37 64.9
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.3e-06 57.0 36 66.7
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.7e-06 56.6 37 64.9
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.7e-06 56.6 37 67.6
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.7e-06 56.6 37 62.2
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.7e-06 56.6 37 64.9
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 2.2e-06 56.2 96 39.6
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 2.2e-06 56.2 96 39.6
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.2e-06 56.2 37 67.6
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 2.8e-06 55.8 51 51.0
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 2.8e-06 55.8 38 68.4
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 2.8e-06 55.8 38 68.4
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 2.8e-06 55.8 38 68.4
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 3.7e-06 55.5 37 67.6
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 4.8e-06 55.1 38 65.8
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 6.3e-06 54.7 38 65.8
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 6.3e-06 54.7 38 65.8
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 6.3e-06 54.7 38 65.8
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 6.3e-06 54.7 38 65.8
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 6.3e-06 54.7 38 65.8
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 6.3e-06 54.7 38 65.8
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 6.3e-06 54.7 38 60.5


User provided reference genes

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