Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.2e-181 639.8 344 100.0
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 4.1e-113 412.1 347 64.6
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 5.3e-113 411.8 292 72.6
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 8.8e-108 394.4 254 79.1
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 2.9e-103 379.4 252 74.2
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 3.0e-100 369.4 253 73.1
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 3.0e-100 369.4 280 68.6
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 6.7e-100 368.2 250 74.0
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 2.0e-99 366.7 252 72.2
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 4.4e-99 365.5 342 58.2
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.7e-98 363.6 248 73.4
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 3.7e-98 362.5 290 64.1
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 4.8e-98 362.1 252 72.2
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 6.3e-98 361.7 252 71.0
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 6.3e-98 361.7 250 70.8
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.1e-97 360.9 300 61.0
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.1e-97 360.9 251 72.9
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.4e-97 360.5 252 70.6
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.4e-97 360.5 252 72.2
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-97 360.5 248 72.6
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.4e-97 360.5 251 71.7
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 5.3e-97 358.6 274 65.0
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 5.3e-97 358.6 248 72.2
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 5.3e-97 358.6 250 72.8
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 7.0e-97 358.2 253 71.1
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.6e-96 357.1 246 72.8
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 2.0e-96 356.7 347 58.2
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 2.6e-96 356.3 253 69.6
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 4.5e-96 355.5 278 65.8
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 5.9e-96 355.1 254 70.5
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 7.7e-96 354.8 253 70.8
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.0e-95 354.4 254 70.1
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.0e-95 354.4 252 70.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.3e-95 354.0 252 70.2
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.7e-95 353.6 271 65.3
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 1.7e-95 353.6 252 73.0
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 2.2e-95 353.2 254 69.7
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 2.2e-95 353.2 249 70.7
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 2.2e-95 353.2 252 70.6
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 2.9e-95 352.8 252 70.6
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 3.8e-95 352.4 271 65.3
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 5.0e-95 352.1 252 70.2
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.0e-95 352.1 252 69.8
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 6.5e-95 351.7 257 69.6
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 6.5e-95 351.7 253 69.2
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 8.5e-95 351.3 252 69.8
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 1.1e-94 350.9 251 70.9
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 1.1e-94 350.9 281 64.1
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.5e-94 350.5 253 67.2
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.9e-94 350.1 252 69.8
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.9e-94 350.1 252 69.8
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.9e-94 350.1 287 65.9
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.9e-94 350.1 258 70.2
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 3.2e-94 349.4 252 69.4
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 4.2e-94 349.0 350 58.9
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 5.5e-94 348.6 252 69.0
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 5.5e-94 348.6 251 69.7
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 5.5e-94 348.6 251 68.9
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.6e-93 347.1 322 61.8
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 2.1e-93 346.7 303 62.0
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 8.0e-93 344.7 248 69.8
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 8.0e-93 344.7 294 63.9
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.4e-92 344.0 324 59.9
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.4e-92 344.0 248 68.5
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 1.8e-92 343.6 280 63.2
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.8e-92 343.6 240 69.2
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 3.0e-92 342.8 259 67.2
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 5.2e-92 342.0 331 58.3
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 5.2e-92 342.0 321 57.3
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.5e-91 340.5 296 59.1
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 4.4e-91 339.0 345 58.3
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.8e-89 333.6 243 64.6
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 7.0e-89 331.6 301 60.1
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 2.0e-88 330.1 277 62.1
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 2.7e-88 329.7 293 62.5
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 4.5e-88 328.9 285 61.8
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 5.9e-88 328.6 296 62.8
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 5.9e-88 328.6 252 66.3
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 7.7e-88 328.2 322 55.9
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.0e-87 327.8 252 66.3
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.2e-87 326.6 252 66.3
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.2e-87 326.6 252 66.3
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 6.5e-87 325.1 308 57.8
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 6.5e-87 325.1 286 60.8
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.5e-86 323.9 306 58.8
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.5e-86 323.2 290 60.0
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 7.2e-86 321.6 291 58.1
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 9.4e-86 321.2 241 64.3
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 6.1e-85 318.5 252 63.5
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 5.2e-84 315.5 350 53.7
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 6.8e-84 315.1 253 62.1
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 8.8e-84 314.7 326 53.7
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 2.5e-78 296.6 274 59.1
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 3.2e-78 296.2 259 57.5
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 5.5e-78 295.4 250 59.2
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-77 294.3 248 58.9
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.7e-77 293.1 250 58.4
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 2.0e-75 287.0 209 68.4
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 6.6e-71 271.9 243 56.0
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 8.0e-69 265.0 254 56.7
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.2e-67 261.2 196 65.3
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 2.9e-66 256.5 253 50.6
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.0e-63 248.1 249 49.8
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 2.3e-63 246.9 251 53.4
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.5e-62 244.2 339 41.0
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.2e-51 208.0 163 63.2
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.4e-51 206.5 134 73.1
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 9.8e-51 204.9 239 44.8
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 8.6e-47 191.8 195 48.2
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.5e-46 190.3 188 54.8
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 3.4e-43 179.9 163 57.7
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.7e-42 177.6 126 71.4
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-41 174.5 185 51.9
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 1.2e-37 161.4 142 57.7
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.1e-37 160.6 185 53.0
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 2.6e-35 153.7 163 52.1
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.5e-32 143.3 104 65.4
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 2.3e-31 140.6 105 63.8
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.9e-30 137.5 165 49.1
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 1.3e-29 134.8 97 66.0
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-28 131.3 104 59.6
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.0e-27 127.5 98 66.3
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.7e-26 124.4 93 65.6
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.7e-26 124.4 84 73.8
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.8e-26 123.2 103 56.3
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 4.9e-26 122.9 207 35.3
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.1e-20 105.1 82 63.4
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.1e-20 103.6 71 62.0
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 4.5e-19 99.8 81 60.5
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 5.8e-19 99.4 85 61.2
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 1.9e-17 94.4 68 63.2
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 2.4e-17 94.0 50 88.0
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 1.3e-15 88.2 72 51.4
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 3.0e-15 87.0 56 75.0
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 1.5e-14 84.7 230 28.3
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.9e-14 84.3 120 45.0
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 4.3e-14 83.2 56 73.2
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 4.3e-14 83.2 96 55.2
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 8.1e-13 79.0 124 37.1
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.2e-11 75.1 183 29.0
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.5e-11 74.7 148 33.8
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 1.8e-07 61.2 38 68.4
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 2.3e-07 60.8 120 32.5
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 2.3e-07 60.8 47 68.1
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 3.9e-07 60.1 66 48.5


User provided reference genes

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