Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 2.1e-241 838.6 413 100.0
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.0e-199 699.1 419 81.4
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.2e-197 691.8 417 81.1
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 3.5e-196 688.3 412 83.0
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 3.9e-195 684.9 408 82.4
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 6.5e-182 641.0 413 75.5
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 1.6e-180 636.3 417 76.0
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 4.2e-173 611.7 410 74.1
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 7.2e-173 610.9 405 75.1
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 7.2e-173 610.9 406 72.7
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 6.1e-172 607.8 410 72.7
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 1.0e-171 607.1 416 73.1
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 1.3e-171 606.7 408 74.3
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.3e-171 605.9 406 73.4
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.3e-171 605.9 406 73.4
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 3.9e-171 605.1 415 72.3
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 1.1e-170 603.6 414 72.0
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 1.9e-170 602.8 416 71.6
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 1.9e-170 602.8 418 71.8
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 2.5e-170 602.4 416 72.1
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 3.3e-170 602.1 416 73.1
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 9.7e-170 600.5 409 71.6
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 9.7e-170 600.5 407 72.5
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 9.7e-170 600.5 405 73.1
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 9.7e-170 600.5 412 71.1
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.3e-169 600.1 414 71.7
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 1.6e-169 599.7 406 74.6
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 2.2e-169 599.4 414 71.5
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 4.8e-169 598.2 406 72.7
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 6.3e-169 597.8 406 72.7
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 6.3e-169 597.8 414 71.3
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.1e-168 597.0 415 71.3
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.4e-168 596.7 419 69.9
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 1.4e-168 596.7 407 71.5
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 1.4e-168 596.7 414 71.3
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.8e-168 596.3 407 71.5
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.8e-168 596.3 409 71.9
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 1.8e-168 596.3 412 71.1
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 1.8e-168 596.3 407 71.5
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 3.1e-168 595.5 413 71.2
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 3.1e-168 595.5 413 71.9
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 3.1e-168 595.5 402 71.4
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 4.1e-168 595.1 413 72.2
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 4.1e-168 595.1 408 71.3
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 5.3e-168 594.7 409 71.6
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 6.9e-168 594.3 404 72.3
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 6.9e-168 594.3 411 71.3
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 9.0e-168 594.0 410 71.5
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 1.5e-167 593.2 410 71.7
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 1.5e-167 593.2 410 71.7
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 1.5e-167 593.2 409 71.6
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.5e-167 593.2 407 71.7
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 2.0e-167 592.8 404 72.0
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.0e-167 592.8 408 71.8
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.6e-167 592.4 410 73.2
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 3.4e-167 592.0 410 71.5
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 3.4e-167 592.0 412 72.3
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 4.5e-167 591.7 410 71.5
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 5.9e-167 591.3 407 72.0
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 5.9e-167 591.3 407 71.0
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 5.9e-167 591.3 404 72.3
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 7.7e-167 590.9 410 71.2
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 7.7e-167 590.9 410 71.5
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 1.0e-166 590.5 406 72.2
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 1.3e-166 590.1 407 71.5
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 1.3e-166 590.1 405 72.6
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 2.2e-166 589.3 409 72.6
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 2.2e-166 589.3 406 71.2
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 2.9e-166 589.0 413 70.2
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 3.8e-166 588.6 409 69.4
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.1e-165 587.0 413 70.2
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 1.4e-165 586.6 414 72.0
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 1.9e-165 586.3 408 71.6
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 1.9e-165 586.3 408 70.8
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 2.5e-165 585.9 410 71.5
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 2.5e-165 585.9 413 70.0
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 2.5e-165 585.9 408 72.1
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 2.5e-165 585.9 402 71.1
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 3.2e-165 585.5 413 71.7
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 5.5e-165 584.7 413 71.4
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.2e-164 583.6 412 71.4
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.2e-164 583.6 413 71.4
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 2.1e-164 582.8 417 70.5
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 2.7e-164 582.4 410 70.5
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 2.7e-164 582.4 410 71.0
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 7.9e-164 580.9 408 69.9
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 7.9e-164 580.9 410 70.7
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 1.0e-163 580.5 407 69.8
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 1.4e-163 580.1 416 69.7
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.8e-163 579.7 412 67.0
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 1.1e-162 577.0 406 71.9
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.1e-162 577.0 410 68.5
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 2.5e-162 575.9 407 71.3
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 5.7e-162 574.7 412 67.7
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 7.4e-162 574.3 406 69.7
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 9.7e-162 573.9 413 69.5
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 3.7e-161 572.0 407 70.5
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 2.6e-159 565.8 406 69.0
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 5.9e-159 564.7 402 70.4
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 6.5e-158 561.2 428 67.1
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 5.7e-154 548.1 421 67.7
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 7.4e-154 547.7 403 67.2
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 5.3e-152 541.6 407 67.6
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 9.4e-149 530.8 405 65.2
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 3.6e-148 528.9 410 65.1
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 4.4e-146 521.9 404 65.3
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 1.9e-141 506.5 413 62.7
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 2.5e-141 506.1 365 71.0
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 2.1e-140 503.1 362 70.4
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 2.7e-140 502.7 409 62.6
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.3e-137 493.8 357 68.6
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 3.7e-137 492.3 410 61.0
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 3.7e-137 492.3 383 65.5
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 4.8e-137 491.9 405 61.2
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 8.3e-137 491.1 354 68.6
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 4.1e-136 488.8 400 62.5
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 1.2e-135 487.3 410 61.7
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 1.6e-135 486.9 355 68.7
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.6e-135 486.9 408 60.8
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 1.7e-134 483.4 421 62.2
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 1.7e-134 483.4 409 60.6
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 1.1e-133 480.7 407 60.0
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 2.5e-133 479.6 411 61.6
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 4.2e-133 478.8 408 60.0
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 1.6e-132 476.9 403 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.0e-131 474.2 410 59.3
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 1.0e-131 474.2 412 61.4
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 2.7e-127 459.5 349 69.3
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 7.7e-127 458.0 416 57.7
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.2e-122 444.1 365 61.4
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.7e-121 440.3 412 55.6
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 2.3e-118 429.9 412 54.1
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 6.6e-118 428.3 433 52.2
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 1.2e-116 424.1 431 52.2
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 3.1e-115 419.5 433 51.0
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 3.4e-114 416.0 413 52.1
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 3.4e-114 416.0 411 52.8
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 9.8e-114 414.5 420 52.4
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 2.9e-113 412.9 321 65.4
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 2.0e-111 406.8 408 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.1e-109 401.0 402 53.5
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 3.1e-107 392.9 372 56.2
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.0e-106 390.2 294 66.7
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 1.9e-104 383.6 382 56.0
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 4.1e-104 382.5 376 56.4
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 6.2e-100 368.6 277 67.1
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 4.0e-99 365.9 408 47.5
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.4e-96 357.5 217 77.9
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 2.3e-94 350.1 225 72.9
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 1.9e-88 330.5 297 57.2
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 2.5e-85 320.1 380 52.6
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 2.1e-79 300.4 174 81.6
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.5e-74 284.3 283 53.7
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 1.2e-71 274.6 238 60.9
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 6.2e-68 262.3 249 57.8
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.0e-62 243.4 203 59.6
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.0e-62 243.4 203 59.6
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.1e-60 237.3 198 60.1
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.1e-60 237.3 198 60.1
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.1e-60 237.3 198 60.1
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 5.9e-50 202.6 112 84.8
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 4.6e-47 193.0 111 81.1
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.0e-46 190.3 190 55.8
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.0e-46 190.3 190 55.8
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.0e-46 190.3 190 55.8
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 2.0e-34 151.0 88 79.5
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.2e-33 147.5 88 77.3
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 8.5e-33 145.6 162 50.0
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.8e-27 127.9 101 65.3
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 3.1e-27 127.1 104 62.5
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 5.3e-27 126.3 76 75.0
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 7.7e-26 122.5 86 67.4
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 1.0e-25 122.1 77 72.7
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.9e-25 120.6 148 48.0
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.5e-21 108.2 71 73.2
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 4.4e-21 106.7 56 87.5
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 3.7e-20 103.6 54 87.0
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.4e-19 101.7 65 69.2
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.3e-17 95.1 139 47.5
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 6.5e-17 92.8 94 57.4
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 1.5e-16 91.7 77 55.8
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 2.3e-14 84.3 42 92.9
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 9.2e-11 72.4 45 71.1
FAN21G3810 Fragaria x ananassa HOM05D003673 ORTHO05D025527 1.1e-08 65.5 137 34.3
FAN10G3644 Fragaria x ananassa HOM05D003673 ORTHO05D025527 2.5e-08 64.3 137 33.6
FAN25G1183 Fragaria x ananassa HOM05D003673 ORTHO05D025527 3.3e-08 63.9 141 34.0
FAN18G2996 Fragaria x ananassa HOM05D003673 ORTHO05D025527 1.2e-07 62.0 137 33.6


User provided reference genes

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