Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 1.1e-68 263.1 127 100.0
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 3.5e-30 135.2 66 100.0
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 3.5e-30 135.2 66 100.0
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.8e-18 96.3 75 64.0
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 2.0e-17 92.8 73 64.4
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 7.6e-17 90.9 59 79.7
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.9e-15 86.3 55 72.7
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 2.5e-15 85.9 49 79.6
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 2.5e-15 85.9 56 76.8
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 3.2e-15 85.5 61 72.1
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 5.5e-15 84.7 53 77.4
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 7.2e-15 84.3 53 77.4
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 9.4e-15 84.0 49 79.6
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 3.6e-14 82.0 49 75.5
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 1.8e-13 79.7 64 67.2
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 2.3e-13 79.3 53 71.7
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 3.0e-13 79.0 69 60.9
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 3.0e-13 79.0 71 63.4
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 5.1e-13 78.2 55 74.5
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 6.7e-13 77.8 70 58.6
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 8.8e-13 77.4 49 75.5
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 1.1e-12 77.0 57 66.7
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.5e-12 76.6 68 60.3
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 2.5e-12 75.9 55 70.9
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 3.3e-12 75.5 68 57.4
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 3.3e-12 75.5 45 75.6
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 4.3e-12 75.1 71 52.1
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 5.7e-12 74.7 56 64.3
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 9.7e-12 73.9 53 69.8
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 1.3e-11 73.6 51 68.6
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 1.3e-11 73.6 50 70.0
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.7e-11 73.2 65 58.5
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 1.7e-11 73.2 52 67.3
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.2e-11 72.8 48 70.8
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.2e-11 72.8 68 57.4
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.2e-11 72.8 48 70.8
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 2.2e-11 72.8 55 65.5
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 2.2e-11 72.8 56 67.9
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 2.8e-11 72.4 61 65.6
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 3.7e-11 72.0 73 50.7
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 3.7e-11 72.0 62 62.9
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 3.7e-11 72.0 50 70.0
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 3.7e-11 72.0 50 70.0
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 3.7e-11 72.0 67 55.2
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 4.8e-11 71.6 70 57.1
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 4.8e-11 71.6 76 57.9
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 6.3e-11 71.2 75 49.3
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.3e-11 71.2 48 68.8
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 6.3e-11 71.2 57 73.7
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 8.2e-11 70.9 53 66.0
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 8.2e-11 70.9 63 58.7
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 8.2e-11 70.9 66 63.6
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 1.1e-10 70.5 71 57.7
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 1.4e-10 70.1 69 55.1
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 1.8e-10 69.7 74 47.3
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 1.8e-10 69.7 56 60.7
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 1.8e-10 69.7 70 51.4
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 2.4e-10 69.3 72 55.6
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 3.1e-10 68.9 50 68.0
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 3.1e-10 68.9 61 67.2
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.1e-10 68.6 55 67.3
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.1e-10 68.6 55 67.3
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 6.9e-10 67.8 74 51.4
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 9.1e-10 67.4 53 62.3
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 9.1e-10 67.4 54 61.1
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 9.1e-10 67.4 60 63.3
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 9.1e-10 67.4 60 63.3
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 9.1e-10 67.4 57 66.7
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 1.2e-09 67.0 50 66.0
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 1.2e-09 67.0 73 50.7
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.2e-09 67.0 54 63.0
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 2.6e-09 65.9 50 66.0
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.6e-09 65.9 64 56.2
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 2.6e-09 65.9 53 67.9
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 3.4e-09 65.5 53 67.9
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 4.5e-09 65.1 74 50.0
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 5.9e-09 64.7 74 48.6
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 7.7e-09 64.3 48 66.7
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 7.7e-09 64.3 48 66.7
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.7e-08 63.2 53 64.2
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 2.2e-08 62.8 51 66.7
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 2.2e-08 62.8 53 64.2
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 2.2e-08 62.8 53 66.0
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 2.9e-08 62.4 61 49.2
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 2.9e-08 62.4 52 67.3
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 2.9e-08 62.4 53 66.0
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 3.8e-08 62.0 45 66.7
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 5.0e-08 61.6 57 59.6
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 5.0e-08 61.6 53 62.3
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 6.5e-08 61.2 60 55.0
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 1.9e-07 59.7 51 56.9
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 2.5e-07 59.3 67 49.3
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 3.2e-07 58.9 57 56.1
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 7.2e-07 57.8 54 57.4
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 1.6e-06 56.6 49 63.3
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 2.7e-06 55.8 60 50.0
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 3.6e-06 55.5 78 44.9
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 6.1e-06 54.7 72 43.1
SEGI_01277 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 7.9e-06 54.3 46 60.9


User provided reference genes

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