Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 1.4e-137 493.0 272 100.0
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 2.4e-52 209.9 272 54.8
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.7e-51 206.5 282 52.5
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 8.6e-50 201.4 282 52.1
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.6e-38 163.3 239 46.4
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 2.2e-37 160.2 243 46.9
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 3.8e-37 159.5 239 46.4
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 3.8e-37 159.5 222 50.5
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.1e-36 157.9 244 48.4
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.4e-36 157.5 249 45.8
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 4.1e-36 156.0 246 47.6
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 7.1e-36 155.2 289 43.3
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.5e-35 152.9 235 46.4
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 5.1e-34 149.1 237 46.8
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 8.6e-34 148.3 247 45.3
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 1.1e-33 147.9 229 46.3
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 2.5e-33 146.7 279 42.3
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 4.3e-33 146.0 253 43.9
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.2e-32 144.4 230 42.6
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 1.6e-32 144.1 244 46.7
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 2.1e-32 143.7 235 44.7
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 3.6e-32 142.9 247 43.7
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 3.6e-32 142.9 240 42.5
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 8.1e-32 141.7 250 42.8
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.4e-31 141.0 270 41.9
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 4.0e-31 139.4 236 45.3
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 5.2e-31 139.0 167 53.3
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 5.2e-31 139.0 252 43.3
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 6.9e-31 138.7 287 43.2
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 8.9e-31 138.3 253 46.2
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.2e-30 137.9 232 45.3
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 1.2e-30 137.9 261 41.4
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 1.5e-30 137.5 233 42.9
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 2.0e-30 137.1 228 43.4
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 2.0e-30 137.1 240 42.9
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 2.0e-30 137.1 180 46.7
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 2.6e-30 136.7 251 43.8
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 3.4e-30 136.3 236 44.1
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 5.8e-30 135.6 236 44.9
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 5.8e-30 135.6 261 42.1
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 5.8e-30 135.6 254 43.7
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 5.8e-30 135.6 273 41.4
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 7.6e-30 135.2 253 43.1
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 7.6e-30 135.2 227 44.5
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 9.9e-30 134.8 255 43.9
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 9.9e-30 134.8 277 42.6
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 1.3e-29 134.4 235 43.8
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 1.7e-29 134.0 276 42.0
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.7e-29 134.0 279 40.9
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.8e-29 132.9 256 42.2
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 4.9e-29 132.5 215 45.1
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 4.9e-29 132.5 228 43.0
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 6.4e-29 132.1 180 45.0
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 6.4e-29 132.1 236 39.4
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.1e-28 131.3 231 42.0
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 1.4e-28 131.0 239 43.1
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.9e-28 130.6 231 42.4
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 2.4e-28 130.2 263 39.9
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.2e-28 129.8 231 41.6
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 4.2e-28 129.4 180 44.4
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 1.2e-27 127.9 235 43.4
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 1.2e-27 127.9 235 43.4
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.2e-27 127.9 213 46.0
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 1.6e-27 127.5 234 43.2
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 1.6e-27 127.5 234 43.2
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 2.1e-27 127.1 219 43.8
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 2.7e-27 126.7 194 47.4
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 3.5e-27 126.3 284 40.5
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 3.5e-27 126.3 260 41.9
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 7.8e-27 125.2 180 43.3
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 1.7e-26 124.0 218 43.6
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.0e-26 123.2 248 40.7
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 3.9e-26 122.9 174 44.3
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 3.9e-26 122.9 174 44.3
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 6.6e-26 122.1 245 39.2
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 8.7e-26 121.7 228 42.1
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 4.3e-25 119.4 211 38.9
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 5.6e-25 119.0 197 43.7
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 5.6e-25 119.0 247 40.9
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 7.3e-25 118.6 243 42.0
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.3e-24 117.9 212 43.4
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 9.0e-23 111.7 143 50.3
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.3e-21 107.8 230 41.3
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.7e-21 107.5 273 36.3
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 2.2e-21 107.1 261 37.5
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 4.9e-21 105.9 130 60.0
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 7.1e-20 102.1 91 70.3
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 1.2e-19 101.3 92 68.5
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 2.7e-19 100.1 65 73.8
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 6.0e-19 99.0 118 47.5
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 5.1e-18 95.9 134 53.0
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.9e-17 94.0 237 34.6
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 4.3e-17 92.8 163 37.4
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 5.6e-17 92.4 141 53.9
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 9.6e-17 91.7 74 73.0
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 3.6e-16 89.7 154 39.0
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 4.8e-16 89.4 115 50.4
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 2.4e-15 87.0 161 38.5
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 6.4e-13 79.0 153 37.9
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 3.2e-12 76.6 143 36.4
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 4.2e-12 76.3 94 59.6
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 9.3e-12 75.1 126 46.0
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 9.3e-12 75.1 62 64.5
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 9.3e-12 75.1 62 64.5
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.1e-11 73.9 179 32.4
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 2.7e-11 73.6 188 36.2
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 2.7e-11 73.6 180 33.3
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 4.6e-11 72.8 62 62.9
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 4.6e-11 72.8 153 36.6
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.0e-10 71.6 212 30.2
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.0e-10 71.6 212 30.2
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 1.8e-10 70.9 179 30.7
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 3.9e-10 69.7 82 57.3
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 3.9e-10 69.7 144 49.3
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.9e-10 69.7 177 38.4
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 3.9e-10 69.7 99 44.4
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 5.1e-10 69.3 156 39.7
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 5.1e-10 69.3 126 46.0
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 5.1e-10 69.3 198 30.3
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 5.1e-10 69.3 217 29.5
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 6.7e-10 68.9 59 62.7
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.1e-09 68.2 59 61.0
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.1e-09 68.2 60 56.7
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 1.1e-09 68.2 150 33.3
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 1.1e-09 68.2 150 33.3
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.5e-09 67.8 80 51.2
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.5e-09 67.8 60 55.0
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 1.5e-09 67.8 80 50.0
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 1.9e-09 67.4 156 37.8
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.9e-09 67.4 106 43.4
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.5e-09 67.0 60 55.0
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 2.5e-09 67.0 58 62.1
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 2.5e-09 67.0 114 43.9
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.5e-09 67.0 86 55.8
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 3.3e-09 66.6 60 53.3
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 3.3e-09 66.6 60 55.0
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 4.3e-09 66.2 252 28.6
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 4.3e-09 66.2 62 59.7
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 4.3e-09 66.2 81 45.7
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 5.6e-09 65.9 99 53.5
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 5.6e-09 65.9 60 58.3
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 5.6e-09 65.9 111 37.8
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 7.4e-09 65.5 60 53.3
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 7.4e-09 65.5 60 55.0
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 9.6e-09 65.1 128 42.2
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.3e-08 64.7 177 29.9
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 1.3e-08 64.7 99 51.5
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 1.3e-08 64.7 80 47.5
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 2.1e-08 63.9 80 45.0
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 3.7e-08 63.2 121 43.8
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 2.4e-07 60.5 58 56.9
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 2.4e-07 60.5 58 56.9
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 2.4e-07 60.5 180 30.6
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 2.6e-06 57.0 49 55.1


User provided reference genes

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