Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22030 Beta vulgaris HOM05D006064 ORTHO05D007619 4.6e-52 207.6 105 100.0
Ah.01g005550 Amaranthus hybridus HOM05D006064 ORTHO05D007619 1.7e-41 172.6 103 83.5
Ah.01g021630 Amaranthus hybridus HOM05D006064 ORTHO05D007619 2.8e-41 171.8 102 85.3
Cfa002095 Carpinus fangiana HOM05D006064 ORTHO05D007619 5.5e-37 157.5 101 81.2
Haze_16361 Corylus avellana HOM05D006064 ORTHO05D007619 1.2e-36 156.4 101 79.2
AUR62011660 Chenopodium quinoa HOM05D006064 ORTHO05D007619 1.6e-36 156.0 113 73.5
AUR62016483 Chenopodium quinoa HOM05D006064 ORTHO05D007619 6.1e-36 154.1 113 73.5
Hma1.2p1_1195F.1_g265790 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 2.3e-35 152.1 98 77.6
Hma1.2p1_3147F.1_g333156 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 2.3e-35 152.1 98 77.6
MBI09_g14014_MAGBIO Magnolia biondii HOM05D006064 ORTHO05D007619 2.3e-35 152.1 100 77.0
ClCG09G001940 Citrullus lanatus HOM05D006064 ORTHO05D007619 3.9e-35 151.4 101 73.3
CANSAT56G1509 Cannabis sativa HOM05D006064 ORTHO05D007619 6.7e-35 150.6 100 75.0
Sed0002776 Sechium edule HOM05D006064 ORTHO05D007619 8.8e-35 150.2 101 73.3
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 1.1e-34 149.8 107 70.1
MELO3C024255.2 Cucumis melo HOM05D006064 ORTHO05D007619 2.0e-34 149.1 102 74.5
Potri.001G184000 Populus trichocarpa HOM05D006064 ORTHO05D007619 2.0e-34 149.1 104 74.0
Gohir.D05G131300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 2.6e-34 148.7 102 74.5
Gorai.009G135000 Gossypium raimondii HOM05D006064 ORTHO05D007619 2.6e-34 148.7 102 74.5
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 3.3e-34 148.3 103 74.8
CsaV3_7G033420 Cucumis sativus L. HOM05D006064 ORTHO05D007619 3.3e-34 148.3 104 74.0
GSVIVG01017072001 Vitis vinifera HOM05D006064 ORTHO05D007619 3.3e-34 148.3 98 75.5
Manes.04G130000 Manihot esculenta HOM05D006064 ORTHO05D007619 4.4e-34 147.9 104 72.1
QL05p021654 Quercus lobata HOM05D006064 ORTHO05D007619 5.7e-34 147.5 99 75.8
arahy.Tifrunner.gnm1.ann1.MEX591 Arachis hypogaea HOM05D006064 ORTHO05D007619 7.4e-34 147.1 100 74.0
Gohir.A05G131800 Gossypium hirsutum HOM05D006064 ORTHO05D007619 7.4e-34 147.1 102 73.5
CSS0016455 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 9.7e-34 146.7 98 74.5
Thecc.06G092400 Theobroma cacao HOM05D006064 ORTHO05D007619 9.7e-34 146.7 105 70.5
Cpa.g.sc98.5 Carica papaya HOM05D006064 ORTHO05D007619 1.3e-33 146.4 104 73.1
DCAR_016211 Daucus carota HOM05D006064 ORTHO05D007619 1.3e-33 146.4 98 73.5
Duzib160G0510 Durio zibethinus HOM05D006064 ORTHO05D007619 1.3e-33 146.4 102 72.5
Lsat_1_v5_gn_5_130940 Lactuca sativa HOM05D006064 ORTHO05D007619 1.3e-33 146.4 96 74.0
PGR102G3343 Punica granatum HOM05D006064 ORTHO05D007619 1.3e-33 146.4 102 76.5
Dinv38021 Davidia involucrata HOM05D006064 ORTHO05D007619 1.7e-33 146.0 98 74.5
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 2.8e-33 145.2 102 71.6
Gohir.D10G070100 Gossypium hirsutum HOM05D006064 ORTHO05D007619 2.8e-33 145.2 98 74.5
RcHm_v2.0_Chr2g0138941 Rosa chinensis HOM05D006064 ORTHO05D007619 2.8e-33 145.2 100 73.0
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 3.7e-33 144.8 99 76.8
SGA_v2.0_scaffold69G23360 Striga asiatica HOM05D006064 ORTHO05D007619 3.7e-33 144.8 100 73.0
Sc12g0009460 Simmondsia chinensis HOM05D006064 ORTHO05D007619 4.8e-33 144.4 102 74.5
CSS0001890 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 6.3e-33 144.1 98 73.5
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 6.3e-33 144.1 98 74.5
Duzib235G0379 Durio zibethinus HOM05D006064 ORTHO05D007619 6.3e-33 144.1 102 69.6
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 6.3e-33 144.1 100 74.0
Gorai.011G074400 Gossypium raimondii HOM05D006064 ORTHO05D007619 6.3e-33 144.1 98 74.5
HanXRQChr12g0360791 Helianthus annuus HOM05D006064 ORTHO05D007619 6.3e-33 144.1 100 75.0
Solyc03g120630.4 Solanum lycopersicum HOM05D006064 ORTHO05D007619 6.3e-33 144.1 98 73.5
TAR383G1034 Trochodendron aralioides HOM05D006064 ORTHO05D007619 6.3e-33 144.1 98 73.5
Lalb_Chr22g0351371 Lupinus albus HOM05D006064 ORTHO05D007619 8.2e-33 143.7 101 73.3
PGSC0003DMG400002547 Solanum tuberosum HOM05D006064 ORTHO05D007619 8.2e-33 143.7 98 74.5
Actinidia21680 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.1e-32 143.3 94 74.5
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 1.4e-32 142.9 102 74.5
Aqoxy7G01608 Aquilegia oxysepala HOM05D006064 ORTHO05D007619 1.8e-32 142.5 101 72.3
Gohir.A10G081300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 1.8e-32 142.5 105 69.5
Lj5C58T14 Lonicera japonica HOM05D006064 ORTHO05D007619 3.1e-32 141.7 103 67.0
Sabra01G0155400 Salix brachista HOM05D006064 ORTHO05D007619 3.1e-32 141.7 100 73.0
CAN.G438.28 Capsicum annuum HOM05D006064 ORTHO05D007619 4.1e-32 141.4 100 71.0
Eucgr.F03039 Eucalyptus grandis HOM05D006064 ORTHO05D007619 4.1e-32 141.4 104 71.2
Glyma.13G357200 Glycine max HOM05D006064 ORTHO05D007619 5.3e-32 141.0 97 72.2
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 9.1e-32 140.2 99 71.7
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 9.1e-32 140.2 98 71.4
Nn2g11694 Nelumbo nucifera HOM05D006064 ORTHO05D007619 9.1e-32 140.2 97 69.1
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.2e-31 139.8 98 73.5
Nitab4.5_0007217g0010 Nicotiana tabacum HOM05D006064 ORTHO05D007619 1.2e-31 139.8 100 72.0
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.2e-31 139.8 109 67.0
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 1.6e-31 139.4 98 70.4
Prupe.3G067300 Prunus persica HOM05D006064 ORTHO05D007619 1.6e-31 139.4 100 71.0
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.6e-31 139.4 108 67.6
Glyma.15G016400 Glycine max HOM05D006064 ORTHO05D007619 2.0e-31 139.0 99 69.7
TAR626G0023 Trochodendron aralioides HOM05D006064 ORTHO05D007619 2.0e-31 139.0 98 72.4
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 2.6e-31 138.7 100 72.0
SGA_v2.0_scaffold5G02555 Striga asiatica HOM05D006064 ORTHO05D007619 2.6e-31 138.7 100 74.0
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 4.5e-31 137.9 98 70.4
Ciclev10026679m.g Citrus clementina HOM05D006064 ORTHO05D007619 4.5e-31 137.9 104 68.3
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 4.5e-31 137.9 99 71.7
Nitab4.5_0001315g0190 Nicotiana tabacum HOM05D006064 ORTHO05D007619 5.9e-31 137.5 97 72.2
PSO566G0311 Papaver somniferum HOM05D006064 ORTHO05D007619 5.9e-31 137.5 95 72.6
PSO782G0135 Papaver somniferum HOM05D006064 ORTHO05D007619 5.9e-31 137.5 95 72.6
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.0e-30 136.7 99 71.7
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 1.3e-30 136.3 99 70.7
Ca_01132_v3 Cicer arietinum L. HOM05D006064 ORTHO05D007619 1.3e-30 136.3 103 67.0
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 1.7e-30 136.0 99 70.7
MD17G1191100 Malus domestica HOM05D006064 ORTHO05D007619 2.2e-30 135.6 100 70.0
CSS0048088 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 2.9e-30 135.2 98 69.4
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 2.9e-30 135.2 99 70.7
TPR.G37258 Trifolium pratense HOM05D006064 ORTHO05D007619 3.8e-30 134.8 104 68.3
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 8.5e-30 133.7 98 70.4
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 8.5e-30 133.7 98 70.4
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 1.9e-29 132.5 99 68.7
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 2.5e-29 132.1 98 69.4
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 2.5e-29 132.1 98 69.4
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 2.5e-29 132.1 98 69.4
Migut.I00941 Erythranthe guttata HOM05D006064 ORTHO05D007619 2.5e-29 132.1 104 68.3
unitig_46.g18557 Utricularia gibba HOM05D006064 ORTHO05D007619 3.2e-29 131.7 101 69.3
Medtr2g101770 Medicago truncatula HOM05D006064 ORTHO05D007619 4.2e-29 131.3 100 65.0
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 4.2e-29 131.3 98 69.4
Oeu033507.1 Olea europaea HOM05D006064 ORTHO05D007619 7.2e-29 130.6 100 66.0
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 9.4e-29 130.2 98 67.3
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 9.4e-29 130.2 98 67.3
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 9.4e-29 130.2 98 68.4
unitig_37.g12253 Utricularia gibba HOM05D000346 ORTHO05D000326 1.2e-28 129.8 99 68.7
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 2.1e-28 129.0 97 67.0
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 2.1e-28 129.0 97 67.0
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 2.1e-28 129.0 97 67.0
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 2.1e-28 129.0 104 66.3
Phvul.005G168800 Phaseolus vulgaris HOM05D006064 ORTHO05D007619 2.7e-28 128.6 99 66.7
Lj3g0008796 Lotus japonicus HOM05D006064 ORTHO05D007619 6.1e-28 127.5 96 67.7
VMungo1080G0744 Vigna mungo HOM05D006064 ORTHO05D007619 8.0e-28 127.1 87 70.1
MSTRG.11053 Avicennia marina HOM05D006064 ORTHO05D007619 6.7e-27 124.0 99 67.7
Nn3g18074 Nelumbo nucifera HOM05D006064 ORTHO05D007619 1.1e-26 123.2 100 64.0
CSS0034695 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.7e-25 119.4 98 65.3
vmacro18887 Vaccinium macrocarpon HOM05D006064 ORTHO05D007619 3.7e-25 118.2 97 63.9
AagrBONN_evm.TU.Sc2ySwM_344.4090 Anthoceros agrestis HOM05D006064 ORTHO05D007619 1.4e-24 116.3 96 59.4
SEGI_37104 Sequoiadendron giganteum HOM05D006064 ORTHO05D007619 1.8e-24 115.9 94 64.9
AagrBONN_evm.TU.Sc2ySwM_344.4095 Anthoceros agrestis HOM05D006064 ORTHO05D007619 3.1e-24 115.2 96 58.3
Zm00001eb367450 Zea mays HOM05D006064 ORTHO05D007619 9.1e-24 113.6 102 62.7
Os04g0691600 Oryza sativa ssp. japonica HOM05D006064 ORTHO05D007619 1.6e-23 112.8 96 65.6
Pp3c1_12860 Physcomitrium patens HOM05D006064 ORTHO05D007619 2.5e-21 105.5 72 63.9
Pp3c11_14630 Physcomitrium patens HOM05D006064 ORTHO05D007619 3.2e-21 105.1 72 62.5
Zm00001eb434460 Zea mays HOM05D006064 ORTHO05D007619 7.2e-21 104.0 96 61.5
Actinidia32730 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.7e-17 92.8 98 53.1
Mapoly0027s0119 Marchantia polymorpha HOM05D006064 ORTHO05D007619 4.8e-17 91.3 96 46.9
CBR_g33913 Chara braunii HOM05D006064 ORTHO05D007619 4.1e-16 88.2 77 51.9
MD09G1209400 Malus domestica HOM05D006064 ORTHO05D007619 5.9e-15 84.3 49 79.6
SMO358G0237 Selaginella moellendorffii HOM05D006064 ORTHO05D007619 1.7e-14 82.8 69 56.5
Peaxi162Scf00015g00005 Petunia axillaris HOM05D006064 ORTHO05D007619 3.2e-13 78.6 60 65.0
Actinidia13476 Actinidia chinensis HOM05D006064 ORTHO05D007619 9.5e-13 77.0 64 62.5
SalBow1G4549 Salvia bowleyana HOM05D006064 ORTHO05D007619 2.2e-09 65.9 38 78.9
PRCOL_00005962 Prasinoderma coloniale HOM05D006064 ORTHO05D007619 3.7e-09 65.1 89 39.3
MCO03G166 Micromonas commoda HOM05D006064 ORTHO05D007619 4.9e-09 64.7 61 45.9
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 6.3e-09 64.3 55 60.0
Actinidia35657 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.2e-07 60.1 98 38.8
AagrBONN_evm.TU.Sc2ySwM_362.494 Anthoceros agrestis HOM05D004588 ORTHO05D005365 1.6e-07 59.7 79 40.5
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 7.7e-07 57.4 70 41.4
Cre02.g118950 Chlamydomonas reinhardtii HOM05D004588 ORTHO05D005365 7.7e-07 57.4 69 42.0
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 7.7e-07 57.4 70 40.0
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 1.3e-06 56.6 70 41.4
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 2.3e-06 55.8 70 37.1
Sed0013564 Sechium edule HOM05D004588 ORTHO05D005365 2.9e-06 55.5 91 35.2
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 5.0e-06 54.7 67 44.8
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 5.0e-06 54.7 67 43.3
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 5.0e-06 54.7 70 41.4
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 5.0e-06 54.7 98 34.7
Oeu008630.1 Olea europaea HOM05D004588 ORTHO05D005365 6.6e-06 54.3 72 43.1


User provided reference genes

Program Settings