Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 4088.9 2102 100.0
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 2962.2 2123 74.4
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 2857.0 2095 71.4
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 2528.1 2071 65.5
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2206.4 2108 57.5
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2060.4 2117 53.3
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1999.6 2113 52.8
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 1984.9 2096 52.0
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 1961.8 2097 52.0
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 1959.1 2137 51.3
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1949.1 2101 51.0
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1945.6 2118 51.1
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 1944.9 2095 50.7
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 1941.4 2089 51.0
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1940.2 2092 51.5
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1939.1 2135 51.1
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 1935.6 2099 50.4
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1931.8 2129 51.3
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 1927.1 2096 50.9
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1915.6 2100 50.8
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1908.3 2096 50.0
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 1892.9 2092 49.5
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1873.2 1263 77.1
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1869.4 2098 49.1
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1865.5 2096 49.6
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1860.5 2097 50.2
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1856.6 2096 49.6
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1850.9 2095 49.5
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1849.7 2189 47.9
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1843.9 2092 48.7
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1795.4 2098 47.9
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1792.7 2288 45.5
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1791.2 2098 48.0
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1781.9 2160 47.4
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1774.6 2091 47.1
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1771.9 2091 47.4
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1771.1 2085 47.4
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1761.1 2093 48.1
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1757.3 2095 47.1
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1754.6 2112 47.8
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1754.6 2135 47.8
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1753.0 2104 46.8
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1751.5 2132 47.6
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1750.3 2086 47.2
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1749.2 2092 47.0
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1745.7 2100 47.0
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1740.3 2107 46.5
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1738.0 2099 47.6
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1734.2 2166 45.6
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1724.5 2097 46.2
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1721.8 2093 47.4
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1715.3 2092 46.3
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1713.0 2132 46.5
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1709.5 1906 49.4
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1694.9 2089 45.7
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1689.5 2088 45.9
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1685.6 2175 44.6
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1671.4 2087 45.2
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1661.0 2089 45.4
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1659.0 2085 45.2
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1654.8 2115 45.3
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1647.1 2096 44.9
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1646.7 2093 44.9
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1645.6 2096 44.8
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1644.8 2287 43.2
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1643.2 2093 44.9
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1642.1 2100 46.0
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1641.3 2089 44.8
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1586.6 2085 44.1
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1580.8 1940 46.3
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1558.1 2117 43.7
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1515.4 1860 46.3
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1515.0 2140 41.7
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1505.0 2119 42.6
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1483.0 2085 42.4
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1419.8 2120 41.1
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1325.1 2099 40.4
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1216.4 1386 48.8
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1215.3 1401 49.9
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1193.7 1587 44.2
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1166.8 1294 51.5
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1150.2 2448 34.8
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1100.5 1393 46.4
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 1.4e-296 1024.2 2140 33.6
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 2.3e-275 953.7 2191 30.7
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 3.0e-259 900.2 2213 29.9
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 4.3e-250 869.8 1254 42.3
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 5.3e-240 836.3 2202 28.2
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.1e-232 812.0 1118 42.7
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 5.7e-226 789.6 875 49.3
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 4.2e-221 773.5 1030 43.5
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 4.5e-215 753.4 629 61.2
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 2.6e-210 737.6 662 58.2
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 2.0e-202 711.4 1377 36.5
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 1.7e-193 681.8 805 48.1
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.5e-181 642.1 824 44.5
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 5.6e-181 640.2 1558 29.1
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 5.4e-168 597.0 736 44.3
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 7.6e-162 576.6 509 58.5
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.4e-160 571.6 942 36.7
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 1.1e-147 529.6 811 40.3
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 6.1e-143 513.8 802 37.8
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 5.3e-139 500.7 2311 23.5
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 1.7e-132 479.2 796 41.5
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.5e-122 444.9 514 47.7
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 2.4e-115 422.2 536 44.8
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 6.1e-111 407.5 768 35.4
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.4e-107 396.4 417 53.0
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 6.3e-100 370.9 370 50.3
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 5.4e-99 367.9 595 37.0
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.5e-98 365.2 735 35.1
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 5.9e-98 364.4 390 50.5
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.4e-91 343.2 662 36.7
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 5.4e-83 314.7 643 32.7
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.4e-70 273.5 202 65.3
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.1e-67 263.8 266 51.1
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 7.8e-58 231.1 473 30.0
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 2.9e-52 212.6 140 70.7
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.6e-42 180.3 131 63.4
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 4.6e-42 178.7 203 47.3
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.5e-40 173.7 353 33.4
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 9.0e-38 164.5 133 60.9
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 1.2e-37 164.1 146 52.7
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 3.4e-37 162.5 130 60.0
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.7e-34 152.9 622 25.7
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.3e-33 150.6 262 39.7
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.9e-32 146.7 120 63.3
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 5.0e-28 132.1 100 64.0
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 1.6e-26 127.1 533 25.5
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 3.9e-25 122.5 97 60.8
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.5e-24 120.6 92 58.7
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 1.8e-22 113.6 95 54.7
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 4.1e-22 112.5 107 55.1
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 6.9e-22 111.7 716 23.5
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.0e-20 107.8 146 44.5
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 1.9e-19 103.6 151 37.7
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 5.5e-19 102.1 136 39.7
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 7.2e-19 101.7 122 42.6
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 8.8e-17 94.7 169 32.0
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.0e-16 93.6 90 56.7
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 7.4e-16 91.7 125 38.4
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 1.1e-14 87.8 68 64.7
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.8e-14 87.0 156 34.6
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 1.5e-13 84.0 86 46.5
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 1.5e-13 84.0 119 40.3
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 5.9e-13 82.0 71 50.7
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 7.7e-13 81.6 61 62.3
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.8e-12 79.3 230 27.0
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 2.5e-11 76.6 115 38.3
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 3.2e-11 76.3 75 48.0
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 6.1e-10 72.0 69 53.6
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 1.0e-09 71.2 162 33.3
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 3.9e-09 69.3 50 60.0
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 1.7e-07 63.9 61 45.9
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 2.2e-07 63.5 45 68.9
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 4.8e-07 62.4 43 58.1
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.1e-06 61.2 59 54.2
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 4.1e-06 59.3 68 44.1
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 4.1e-06 59.3 56 50.0


User provided reference genes

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