Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g19744 Beta vulgaris HOM05D001045 ORTHO05D001542 1.4e-46 189.5 114 100.0
EL10Ac7g17580 Beta vulgaris HOM05D001045 ORTHO05D001542 1.5e-16 89.7 51 92.2
EL10As4g23407 Beta vulgaris HOM05D001045 ORTHO05D001542 1.5e-16 89.7 51 92.2
AUR62033079 Chenopodium quinoa HOM05D001045 ORTHO05D001542 3.8e-15 85.1 48 91.7
AUR62042038 Chenopodium quinoa HOM05D001045 ORTHO05D001542 1.1e-14 83.6 48 89.6
Migut.I00523 Erythranthe guttata HOM05D001045 ORTHO05D001542 6.0e-13 77.8 67 62.7
Phvul.001G007700 Phaseolus vulgaris HOM05D001045 ORTHO05D001542 7.9e-13 77.4 49 79.6
Actinidia08863 Actinidia chinensis HOM05D001045 ORTHO05D004836 3.9e-12 75.1 52 75.0
CARHR029200 Cardamine hirsuta HOM05D001045 ORTHO05D001542 5.1e-12 74.7 53 79.2
CAN.G1125.5 Capsicum annuum HOM05D001045 ORTHO05D001542 6.7e-12 74.3 50 80.0
Lalb_Chr08g0237091 Lupinus albus HOM05D001045 ORTHO05D001542 6.7e-12 74.3 53 73.6
VMungo1309G2243 Vigna mungo HOM05D001045 ORTHO05D001542 6.7e-12 74.3 49 75.5
VMungo0647G0204 Vigna mungo HOM05D001045 ORTHO05D003147 8.7e-12 73.9 49 77.6
Gorai.008G205500 Gossypium raimondii HOM05D001045 ORTHO05D001542 1.5e-11 73.2 49 81.6
Thhalv10026150m.g Eutrema salsugineum HOM05D001045 ORTHO05D001542 2.5e-11 72.4 53 77.4
PGSC0003DMG400009775 Solanum tuberosum HOM05D001045 ORTHO05D001542 2.5e-11 72.4 50 78.0
MSTRG.9327 Avicennia marina HOM05D001045 ORTHO05D001542 3.3e-11 72.0 53 73.6
Ciclev10021530m.g Citrus clementina HOM05D001045 ORTHO05D001542 3.3e-11 72.0 49 79.6
Thhalv10008675m.g Eutrema salsugineum HOM05D001045 ORTHO05D001542 3.3e-11 72.0 51 78.4
Gohir.D08G211100 Gossypium hirsutum HOM05D001045 ORTHO05D001542 3.3e-11 72.0 49 79.6
Gorai.004G223800 Gossypium raimondii HOM05D001045 ORTHO05D001542 3.3e-11 72.0 49 79.6
Peaxi162Scf00365g00110 Petunia axillaris HOM05D001045 ORTHO05D001542 3.3e-11 72.0 51 76.5
arahy.Tifrunner.gnm1.ann1.4Q9CQT Arachis hypogaea HOM05D001045 ORTHO05D001542 4.3e-11 71.6 47 78.7
CAN.G100.84 Capsicum annuum HOM05D001045 ORTHO05D001542 4.3e-11 71.6 49 77.6
Glyma.04G195100 Glycine max HOM05D001045 ORTHO05D001542 4.3e-11 71.6 47 78.7
Phvul.009G167000 Phaseolus vulgaris HOM05D001045 ORTHO05D001542 4.3e-11 71.6 48 75.0
Solyc07g016150.4 Solanum lycopersicum HOM05D001045 ORTHO05D001542 4.3e-11 71.6 53 71.7
Lj5A97T98 Lonicera japonica HOM05D001045 ORTHO05D001542 5.6e-11 71.2 53 66.0
Sp1g26050 Schrenkiella parvula HOM05D001045 ORTHO05D001542 5.6e-11 71.2 53 75.5
TAR629G0582 Trochodendron aralioides HOM05D001045 ORTHO05D001542 5.6e-11 71.2 55 69.1
BcaC01g00170 Brassica carinata HOM05D001045 ORTHO05D001542 7.4e-11 70.9 68 75.0
COL.COLO4_28091 Corchorus olitorius HOM05D001045 ORTHO05D001542 7.4e-11 70.9 47 80.9
BcaB07g32621 Brassica carinata HOM05D001045 ORTHO05D001542 9.6e-11 70.5 53 75.5
A09p36320 Brassica napus HOM05D001045 ORTHO05D001542 9.6e-11 70.5 53 75.5
BolC3t19906H Brassica oleracea HOM05D001045 ORTHO05D001542 9.6e-11 70.5 53 75.5
Glyma.06G170900 Glycine max HOM05D001045 ORTHO05D001542 9.6e-11 70.5 47 76.6
Manes.06G118500 Manihot esculenta HOM05D001045 ORTHO05D001542 9.6e-11 70.5 53 71.7
Hund02431 Selenicereus undatus HOM05D001045 ORTHO05D001542 9.6e-11 70.5 52 71.2
Gohir.D12G191232 Gossypium hirsutum HOM05D001045 ORTHO05D001542 1.3e-10 70.1 49 79.6
AT1G30230 Arabidopsis thaliana HOM05D001045 ORTHO05D001542 1.6e-10 69.7 51 76.5
BcaB03g13840 Brassica carinata HOM05D001045 ORTHO05D001542 1.6e-10 69.7 53 75.5
BcaC01g00172 Brassica carinata HOM05D001045 ORTHO05D001542 1.6e-10 69.7 53 73.6
A08p24620 Brassica napus HOM05D001045 ORTHO05D001542 1.6e-10 69.7 53 73.6
C03p76490 Brassica napus HOM05D001045 ORTHO05D001542 1.6e-10 69.7 53 73.6
C05p29060 Brassica napus HOM05D001045 ORTHO05D001542 1.6e-10 69.7 53 75.5
BraA08t34417Z Brassica rapa HOM05D001045 ORTHO05D001542 1.6e-10 69.7 53 73.6
Duzib205G0805 Durio zibethinus HOM05D001045 ORTHO05D001542 1.6e-10 69.7 50 74.0
Gohir.A08G193100 Gossypium hirsutum HOM05D001045 ORTHO05D001542 1.6e-10 69.7 49 77.6
Rhsim12G0173700 Rhododendron simsii HOM05D001045 ORTHO05D001542 1.6e-10 69.7 54 68.5
BcaB03g12202 Brassica carinata HOM05D001045 ORTHO05D001542 2.1e-10 69.3 53 73.6
CSS0047623 Camellia sinensis var. sinensis HOM05D001045 ORTHO05D001542 2.1e-10 69.3 53 67.9
Duzib068G0253 Durio zibethinus HOM05D001045 ORTHO05D001542 2.1e-10 69.3 48 75.0
Thecc.03G127400 Theobroma cacao HOM05D001045 ORTHO05D001542 2.1e-10 69.3 48 79.2
Medtr4g019610 Medicago truncatula HOM05D001045 ORTHO05D001542 2.8e-10 68.9 52 71.2
Peaxi162Scf00017g03253 Petunia axillaris HOM05D001045 ORTHO05D001542 2.8e-10 68.9 50 72.0
Lj3g0003505 Lotus japonicus HOM05D001045 ORTHO05D001542 3.6e-10 68.6 49 73.5
Nitab4.5_0001797g0010 Nicotiana tabacum HOM05D001045 ORTHO05D001542 3.6e-10 68.6 50 74.0
Sc08g0009250 Simmondsia chinensis HOM05D001045 ORTHO05D001542 3.6e-10 68.6 51 72.5
TAR371G1051 Trochodendron aralioides HOM05D001045 ORTHO05D001542 3.6e-10 68.6 54 66.7
CARHR108590 Cardamine hirsuta HOM05D001045 ORTHO05D001542 4.8e-10 68.2 51 74.5
Psat7g241360 Pisum sativum HOM05D001045 ORTHO05D001542 4.8e-10 68.2 54 66.7
TWI36G0247 Tripterygium wilfordii HOM05D001045 ORTHO05D001542 4.8e-10 68.2 52 69.2
Carub.0001s2846 Capsella rubella HOM05D001045 ORTHO05D001542 6.2e-10 67.8 51 74.5
Psat0s2826g0040 Pisum sativum HOM05D001045 ORTHO05D001542 6.2e-10 67.8 50 70.0
Gohir.A12G188900 Gossypium hirsutum HOM05D001045 ORTHO05D001542 8.1e-10 67.4 45 82.2
THA.LOC104819764 Tarenaya hassleriana HOM05D001045 ORTHO05D001542 8.1e-10 67.4 51 74.5
Hma1.2p1_2786F.1_g328500 Hydrangea macrophylla HOM05D001045 ORTHO05D001542 1.1e-09 67.0 53 67.9
GSVIVG01008526001 Vitis vinifera HOM05D001045 ORTHO05D001542 1.1e-09 67.0 52 65.4
Actinidia36799 Actinidia chinensis HOM05D001045 ORTHO05D004836 1.4e-09 66.6 44 77.3
CSS0002834 Camellia sinensis var. sinensis HOM05D001045 ORTHO05D001542 1.4e-09 66.6 54 63.0
HPP92_020408 Vanilla planifolia HOM05D001045 ORTHO05D001542 1.4e-09 66.6 55 63.6
Medtr2g461200 Medicago truncatula HOM05D001045 ORTHO05D001542 1.8e-09 66.2 52 67.3
Carub.0003s3224 Capsella rubella HOM05D001045 ORTHO05D001542 2.4e-09 65.9 51 68.6
DCAR_026222 Daucus carota HOM05D001045 ORTHO05D001542 2.4e-09 65.9 49 73.5
HanXRQChr16g0497701 Helianthus annuus HOM05D001045 ORTHO05D001542 2.4e-09 65.9 66 63.6
PGR142G2139 Punica granatum HOM05D001045 ORTHO05D001542 3.1e-09 65.5 50 70.0
RcHm_v2.0_Chr1g0314841 Rosa chinensis HOM05D001045 ORTHO05D001542 3.1e-09 65.5 54 66.7
Haze_07212 Corylus avellana HOM05D001045 ORTHO05D001542 5.3e-09 64.7 51 66.7
ECA232G3111 Erigeron canadensis HOM05D001045 ORTHO05D001542 5.3e-09 64.7 68 67.6
CiPaw.12G042100 Carya illinoinensis HOM05D001045 ORTHO05D001542 6.9e-09 64.3 54 61.1
Lsat_1_v5_gn_4_76880 Lactuca sativa HOM05D001045 ORTHO05D001542 6.9e-09 64.3 68 57.4
AT2G18110 Arabidopsis thaliana HOM05D001045 ORTHO05D001542 9.0e-09 63.9 51 68.6
FAN03G1044 Fragaria x ananassa HOM05D001045 ORTHO05D001542 9.0e-09 63.9 53 67.9
FAN10G3642 Fragaria x ananassa HOM05D001045 ORTHO05D001542 9.0e-09 63.9 53 69.8
FvH4_7g00650 Fragaria vesca HOM05D001045 ORTHO05D001542 1.2e-08 63.5 51 72.5
Nn3g20310 Nelumbo nucifera HOM05D001045 ORTHO05D001542 1.2e-08 63.5 53 62.3
CDE05G3338 Ceratophyllum demersum HOM05D001045 ORTHO05D001542 1.5e-08 63.2 53 64.2
Prupe.1G190100 Prunus persica HOM05D001045 ORTHO05D001542 1.5e-08 63.2 54 63.0
Prupe.4G287700 Prunus persica HOM05D001045 ORTHO05D001542 1.5e-08 63.2 54 63.0
Lsat_1_v5_gn_5_113161 Lactuca sativa HOM05D001045 ORTHO05D001542 2.0e-08 62.8 66 57.6
MD07G1005900 Malus domestica HOM05D001045 ORTHO05D001542 2.0e-08 62.8 54 63.0
PGSC0003DMG400022500 Solanum tuberosum HOM05D001045 ORTHO05D001542 2.0e-08 62.8 46 73.9
FAN01G1777 Fragaria x ananassa HOM05D001045 ORTHO05D001542 2.6e-08 62.4 53 66.0
Lsat_1_v5_gn_1_19821 Lactuca sativa HOM05D001045 ORTHO05D001542 2.6e-08 62.4 66 57.6
Lsat_1_v5_gn_1_29241 Lactuca sativa HOM05D001045 ORTHO05D001542 2.6e-08 62.4 66 57.6
Cfa018836 Carpinus fangiana HOM05D001045 ORTHO05D001542 5.8e-08 61.2 51 62.7
Manes.14G052200 Manihot esculenta HOM05D001045 ORTHO05D001542 5.8e-08 61.2 47 72.3
Atru.chr9.1071 Acer truncatum HOM05D001045 ORTHO05D001542 7.6e-08 60.8 51 70.6
Atru.chr9.1072 Acer truncatum HOM05D001045 ORTHO05D001542 7.6e-08 60.8 51 70.6
Aqoxy5G00311 Aquilegia oxysepala HOM05D001045 ORTHO05D001542 7.6e-08 60.8 53 64.2
CANSAT21G2309 Cannabis sativa HOM05D001045 ORTHO05D001542 7.6e-08 60.8 49 67.3
Nn3g20305 Nelumbo nucifera HOM05D001045 ORTHO05D001542 7.6e-08 60.8 54 57.4
Prupe.2G008700 Prunus persica HOM05D001045 ORTHO05D001542 7.6e-08 60.8 54 61.1
Rhsim02G0250400 Rhododendron simsii HOM05D001045 ORTHO05D001542 9.9e-08 60.5 50 68.0
Atru.chr11.1171 Acer truncatum HOM05D001045 ORTHO05D001542 1.3e-07 60.1 68 69.1
Cpa.g.sc13.135 Carica papaya HOM05D001045 ORTHO05D001542 1.3e-07 60.1 51 64.7
Solyc01g098000.3 Solanum lycopersicum HOM05D001045 ORTHO05D001542 1.3e-07 60.1 46 71.7
THA.LOC104804253 Tarenaya hassleriana HOM05D001045 ORTHO05D001542 1.3e-07 60.1 47 70.2
FAN01G1396 Fragaria x ananassa HOM05D001045 ORTHO05D001542 1.7e-07 59.7 53 64.2
PSO782G3919 Papaver somniferum HOM05D001045 ORTHO05D001542 1.7e-07 59.7 68 58.8
Potri.012G096400 Populus trichocarpa HOM05D001045 ORTHO05D001542 1.7e-07 59.7 51 62.7
TWI14G0516 Tripterygium wilfordii HOM05D001045 ORTHO05D001542 1.7e-07 59.7 51 62.7
Lj9A478T88 Lonicera japonica HOM05D001045 ORTHO05D001542 2.2e-07 59.3 48 66.7
MD02G1316000 Malus domestica HOM05D001045 ORTHO05D001542 2.2e-07 59.3 54 57.4
C07p15420 Brassica napus HOM05D001045 ORTHO05D001542 2.9e-07 58.9 68 63.2
Cc04_g08260 Coffea canephora HOM05D001045 ORTHO05D001542 2.9e-07 58.9 45 68.9
MELO3C020023.2 Cucumis melo HOM05D001045 ORTHO05D001542 3.8e-07 58.5 68 51.5
HanXRQChr09g0273081 Helianthus annuus HOM05D001045 ORTHO05D001542 3.8e-07 58.5 67 56.7
PSO063G6281 Papaver somniferum HOM05D001045 ORTHO05D001542 3.8e-07 58.5 68 61.8
vmacro16671 Vaccinium macrocarpon HOM05D001045 ORTHO05D001542 3.8e-07 58.5 68 54.4
VMungo1309G2245 Vigna mungo HOM05D001045 ORTHO05D001542 3.8e-07 58.5 44 65.9
Ca_20629_v3 Cicer arietinum L. HOM05D001045 ORTHO05D001542 4.9e-07 58.2 39 74.4
Lsat_1_v5_gn_8_114001 Lactuca sativa HOM05D001045 ORTHO05D001542 6.4e-07 57.8 66 56.1
Sp1g26060 Schrenkiella parvula HOM05D001045 ORTHO05D001542 6.4e-07 57.8 66 68.2
Eucgr.H03140 Eucalyptus grandis HOM05D001045 ORTHO05D001542 8.4e-07 57.4 51 58.8
Sabra12G0070600 Salix brachista HOM05D001045 ORTHO05D001542 8.4e-07 57.4 51 58.8
BcaC05g27049 Brassica carinata HOM05D001045 ORTHO05D001542 1.1e-06 57.0 35 82.9
BolC5t31638H Brassica oleracea HOM05D001045 ORTHO05D001542 1.1e-06 57.0 35 82.9
Ciclev10018101m.g Citrus clementina HOM05D001045 ORTHO05D001542 1.1e-06 57.0 52 63.5
QL10p003818 Quercus lobata HOM05D001045 ORTHO05D001542 1.1e-06 57.0 54 55.6
SGA_v2.0_scaffold37G14625 Striga asiatica HOM05D001045 ORTHO05D001542 1.1e-06 57.0 36 77.8
CiPaw.06G009100 Carya illinoinensis HOM05D001045 ORTHO05D001542 1.9e-06 56.2 51 54.9
Ciclev10027451m.g Citrus clementina HOM05D001045 ORTHO05D001542 1.9e-06 56.2 47 68.1
Oeu023488.1 Olea europaea HOM05D001045 ORTHO05D001542 1.9e-06 56.2 45 68.9
Oeu023489.1 Olea europaea HOM05D001045 ORTHO05D001542 1.9e-06 56.2 45 68.9
Ca_08786_v3 Cicer arietinum L. HOM05D001045 ORTHO05D001542 2.4e-06 55.8 34 79.4
RcHm_v2.0_Chr7g0190391 Rosa chinensis HOM05D001045 ORTHO05D001542 2.4e-06 55.8 38 73.7
PSO017G3186 Papaver somniferum HOM05D001045 ORTHO05D001542 3.2e-06 55.5 68 50.0
Sed0010059 Sechium edule HOM05D001045 ORTHO05D001542 7.1e-06 54.3 51 60.8


User provided reference genes

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