Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.8e-148 529.3 265 100.0
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 3.6e-109 398.7 260 76.9
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.3e-95 352.8 248 73.0
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.8e-90 335.9 258 67.4
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.9e-86 323.2 258 65.1
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 2.9e-82 309.3 255 63.1
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.8e-80 301.2 258 62.0
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.2e-72 277.3 264 56.4
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 1.1e-68 264.2 273 53.1
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 2.5e-62 243.0 251 53.8
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.3e-58 230.7 263 47.9
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 6.0e-56 221.9 263 47.9
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.9e-54 216.9 258 46.5
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.3e-53 214.2 259 47.5
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.8e-53 213.0 259 45.9
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.0e-51 206.8 242 47.5
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.7e-47 193.7 259 42.1
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.3e-47 193.4 223 46.2
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 5.1e-47 192.2 259 40.9
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 4.3e-46 189.1 259 44.4
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.1e-45 186.8 259 40.5
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 2.8e-45 186.4 260 40.4
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.4e-44 184.1 262 38.9
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.8e-44 183.7 257 42.0
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.8e-44 183.7 262 40.1
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.8e-44 183.7 262 40.1
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 4.0e-44 182.6 259 40.5
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 5.3e-44 182.2 259 40.5
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 6.9e-44 181.8 260 40.4
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 9.0e-44 181.4 258 39.9
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 1.5e-43 180.6 260 39.2
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.5e-43 180.6 260 40.4
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.0e-43 180.3 260 39.2
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 3.4e-43 179.5 264 38.6
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 3.4e-43 179.5 262 37.4
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 5.8e-43 178.7 260 40.4
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 7.6e-43 178.3 261 39.5
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 9.9e-43 177.9 261 38.7
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.3e-42 177.6 262 38.9
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 1.3e-42 177.6 261 39.8
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.7e-42 177.2 261 37.5
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 1.7e-42 177.2 259 39.4
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.7e-42 177.2 265 37.7
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.2e-42 176.8 260 39.2
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.2e-42 176.8 260 39.2
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 2.2e-42 176.8 262 39.7
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 2.2e-42 176.8 258 43.4
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 3.8e-42 176.0 260 38.5
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 3.8e-42 176.0 261 37.5
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 3.8e-42 176.0 260 39.2
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.8e-42 176.0 262 37.8
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 4.9e-42 175.6 260 39.6
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 6.4e-42 175.3 267 38.6
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.4e-42 175.3 263 40.3
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 6.4e-42 175.3 256 39.5
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 1.9e-41 173.7 257 39.3
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.2e-41 172.9 228 41.2
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 3.2e-41 172.9 259 39.8
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 3.2e-41 172.9 260 37.3
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.4e-41 172.2 261 39.5
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 5.4e-41 172.2 261 37.9
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 9.3e-41 171.4 261 39.1
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-40 171.0 261 39.5
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.2e-40 171.0 259 39.4
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 1.2e-40 171.0 260 39.6
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 1.6e-40 170.6 260 40.8
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.1e-40 170.2 263 38.4
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 2.1e-40 170.2 260 38.1
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 2.1e-40 170.2 260 38.5
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.7e-40 169.9 261 36.4
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 2.7e-40 169.9 260 38.1
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.9e-40 168.3 183 54.1
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 7.9e-40 168.3 260 38.1
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.0e-39 167.9 260 38.1
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 1.0e-39 167.9 261 38.7
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.3e-39 167.5 262 38.5
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.3e-39 167.5 263 37.3
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.3e-39 167.5 263 38.0
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 1.3e-39 167.5 261 38.7
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.8e-39 167.2 263 37.3
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 2.3e-39 166.8 263 38.8
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 2.3e-39 166.8 258 37.6
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 2.3e-39 166.8 261 37.5
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 3.0e-39 166.4 268 37.7
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.9e-39 166.0 106 75.5
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.9e-39 166.0 263 37.6
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.1e-39 165.6 260 37.3
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 1.1e-38 164.5 260 37.7
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.9e-38 163.7 263 36.9
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 5.6e-38 162.2 264 35.2
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 9.6e-38 161.4 260 37.3
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.3e-37 161.0 260 36.5
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.6e-37 160.6 260 36.2
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.6e-37 160.6 315 35.6
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 2.1e-37 160.2 231 37.7
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 3.7e-37 159.5 343 35.9
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.7e-37 159.5 220 40.5
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.7e-37 159.5 220 40.0
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 4.8e-37 159.1 268 34.3
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 8.1e-37 158.3 262 36.3
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.4e-36 157.5 270 33.7
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.4e-36 157.5 266 36.5
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.8e-36 157.1 266 35.0
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.4e-36 156.8 270 34.4
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 2.4e-36 156.8 266 34.6
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 3.1e-36 156.4 266 35.0
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 4.0e-36 156.0 264 33.3
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.3e-36 155.6 274 36.1
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 9.0e-36 154.8 266 34.6
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 9.0e-36 154.8 359 34.3
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.2e-35 154.5 258 37.6
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 1.2e-35 154.5 262 33.6
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 2.0e-35 153.7 267 34.5
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 7.6e-35 151.8 266 36.5
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.0e-34 151.4 355 32.4
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 1.0e-34 151.4 259 35.9
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 1.3e-34 151.0 262 35.5
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.7e-34 150.6 194 46.9
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.7e-34 150.6 269 33.5
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 3.8e-34 149.4 258 34.1
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 4.9e-34 149.1 276 35.9
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 6.5e-34 148.7 261 34.9
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 8.4e-34 148.3 268 33.2
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-33 147.9 320 35.3
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.1e-33 145.2 257 37.4
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 1.0e-31 141.4 271 33.2
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 1.3e-31 141.0 269 33.5
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.3e-31 141.0 320 34.4
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 1.8e-31 140.6 245 35.9
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.3e-31 140.2 270 33.3
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 6.7e-31 138.7 265 32.8
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 6.7e-31 138.7 266 33.1
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 1.5e-30 137.5 248 36.7
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.9e-30 137.1 156 44.9
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.3e-30 136.0 271 33.6
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 6.2e-29 132.1 167 46.1
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.0e-27 127.1 219 34.2
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 2.0e-27 127.1 232 31.9
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 2.5e-25 120.2 270 29.6
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 9.3e-25 118.2 223 33.2
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 2.1e-24 117.1 231 34.2
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 2.1e-24 117.1 153 44.4
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 2.1e-24 117.1 151 41.1
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.3e-23 114.4 153 42.5
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.3e-23 114.4 303 30.0
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.3e-23 114.4 152 43.4
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 3.0e-23 113.2 202 33.2
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.3e-21 107.8 266 30.1
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 2.2e-21 107.1 271 28.8
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.2e-21 107.1 264 28.8
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.4e-17 94.4 216 32.9
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 7.2e-17 92.0 186 33.9
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.7e-16 90.1 228 35.1
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 3.6e-16 89.7 221 28.5
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 3.6e-16 89.7 221 28.5
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.1e-15 85.9 82 52.4
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.3e-14 82.8 82 51.2
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 9.7e-14 81.6 74 54.1
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-12 77.8 121 38.0
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 4.5e-11 72.8 121 34.7
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 2.5e-09 67.0 165 30.3
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 1.2e-08 64.7 159 30.2
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.0e-07 61.6 68 45.6


User provided reference genes

Program Settings