Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 3.4e-192 674.9 347 100.0
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.8e-135 485.3 343 73.5
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.9e-127 459.1 343 71.1
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.9e-127 459.1 343 71.4
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 2.3e-95 353.2 340 56.2
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.3e-87 326.6 349 54.2
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.1e-81 305.1 274 64.6
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 4.6e-80 302.4 264 58.3
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.5e-78 297.4 268 57.5
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.5e-78 296.6 256 59.4
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.1e-77 293.5 416 45.9
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 8.1e-77 291.6 284 53.2
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 8.1e-77 291.6 255 58.0
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.1e-76 291.2 301 53.5
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 8.9e-76 288.1 326 50.9
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 8.9e-76 288.1 263 56.3
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.6e-75 285.0 301 52.2
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 7.6e-75 285.0 286 54.9
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.3e-74 284.3 293 52.9
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 3.7e-74 282.7 254 55.5
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 3.7e-74 282.7 255 56.9
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.2e-72 277.7 258 55.4
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.3e-71 274.2 248 56.9
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.3e-71 274.2 288 51.0
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.1e-70 271.2 344 44.8
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.1e-70 271.2 234 58.5
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.5e-70 270.8 278 52.9
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.8e-69 266.5 280 51.1
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.6e-69 266.2 249 52.2
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 4.7e-69 265.8 264 51.5
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 8.1e-69 265.0 249 52.6
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.4e-68 264.2 264 52.3
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.8e-68 263.8 249 53.0
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.8e-68 263.8 249 53.8
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.8e-68 263.8 289 47.8
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 2.4e-68 263.5 283 48.4
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 4.0e-68 262.7 264 51.1
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.2e-68 262.3 289 51.6
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 5.2e-68 262.3 284 47.5
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.5e-67 260.8 249 52.6
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.5e-67 260.8 253 51.4
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.0e-67 260.4 289 51.2
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.4e-67 259.6 252 52.8
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.2e-66 256.9 514 37.2
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 3.8e-66 256.1 288 49.3
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 4.9e-66 255.8 281 48.8
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.9e-66 255.8 295 48.5
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 6.4e-66 255.4 253 51.8
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 8.4e-66 255.0 254 51.6
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 1.1e-65 254.6 284 47.5
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.4e-65 254.2 256 49.6
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 2.4e-65 253.4 253 49.8
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 3.2e-65 253.1 288 50.7
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 3.2e-65 253.1 249 52.2
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 5.4e-65 252.3 249 52.2
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 7.1e-65 251.9 292 45.5
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 9.3e-65 251.5 284 47.2
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 9.3e-65 251.5 284 47.9
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 3.5e-64 249.6 301 44.2
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 4.6e-64 249.2 284 44.7
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 6.0e-64 248.8 249 50.2
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.7e-63 247.3 259 48.6
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.3e-63 246.9 248 48.0
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 3.0e-63 246.5 249 49.4
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 3.9e-63 246.1 287 47.4
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.9e-63 246.1 246 48.0
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 6.6e-63 245.4 251 46.6
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.1e-62 244.6 241 49.8
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.5e-62 244.2 247 46.6
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.9e-62 243.8 345 42.9
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.9e-62 243.8 256 52.0
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 5.6e-62 242.3 288 43.8
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 7.3e-62 241.9 285 46.3
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.3e-61 241.1 292 43.5
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.6e-61 239.6 252 45.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 4.8e-61 239.2 251 45.8
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.8e-60 237.3 245 49.4
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.4e-60 236.9 249 49.0
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.4e-60 236.9 256 46.9
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.4e-60 236.9 256 46.9
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 3.1e-60 236.5 255 45.5
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 3.1e-60 236.5 264 47.3
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.0e-60 236.1 287 45.3
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 6.9e-60 235.3 255 45.9
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.0e-60 235.0 297 45.1
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 9.0e-60 235.0 318 42.8
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.2e-59 234.6 252 46.0
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 2.0e-59 233.8 283 45.2
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.0e-59 233.8 263 43.7
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 7.6e-59 231.9 253 48.6
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 9.9e-59 231.5 249 49.8
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.2e-58 230.3 300 45.3
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 2.2e-58 230.3 286 45.8
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 6.4e-58 228.8 256 48.0
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 8.4e-58 228.4 271 43.5
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.9e-57 227.3 235 48.9
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.0e-55 221.5 213 54.5
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.7e-55 220.7 269 42.8
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 8.7e-55 218.4 339 40.7
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 4.3e-54 216.1 256 46.1
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.3e-54 216.1 256 46.1
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.6e-53 214.2 265 43.8
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.1e-53 213.8 256 45.3
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.1e-53 213.8 472 32.0
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 3.6e-53 213.0 248 44.4
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 3.1e-52 209.9 258 43.8
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.3e-52 209.1 256 44.9
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 4.5e-51 206.1 334 39.5
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.9e-50 203.4 181 56.4
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 3.8e-50 203.0 283 43.1
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.1e-49 201.4 267 40.8
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.1e-49 198.7 302 39.4
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.6e-48 197.6 261 41.0
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 3.5e-48 196.4 248 43.1
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 6.0e-48 195.7 174 56.3
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 5.6e-46 189.1 186 52.7
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 7.4e-46 188.7 174 54.6
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 2.4e-44 183.7 248 44.0
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 9.0e-44 181.8 236 47.5
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.4e-41 174.5 209 47.8
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 6.9e-36 155.6 140 56.4
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.0e-35 154.1 248 37.5
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 6.5e-34 149.1 182 46.2
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.5e-33 146.0 159 50.3
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 9.3e-33 145.2 251 37.8
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 5.7e-30 136.0 154 48.1
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.6e-29 134.4 148 48.6
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 8.2e-29 132.1 181 43.1
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.1e-28 131.7 226 35.0
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.4e-28 130.6 124 50.8
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 6.9e-28 129.0 131 47.3
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 2.6e-27 127.1 103 58.3
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.1e-25 121.7 272 31.6
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 9.4e-25 118.6 336 30.7
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 2.1e-24 117.5 250 31.2
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 5.7e-22 109.4 201 36.3
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 1.7e-21 107.8 196 34.2
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.7e-21 106.7 218 35.3
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.0e-18 98.6 86 54.7
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.0e-18 98.6 167 34.7
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.0e-18 98.6 171 36.8
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 5.1e-15 86.3 141 34.8
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 8.8e-15 85.5 64 60.9
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 2.0e-14 84.3 132 34.1
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.6e-14 84.0 87 47.1
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 2.6e-14 84.0 204 30.4
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.8e-13 80.5 222 30.2
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 6.3e-13 79.3 103 40.8
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 1.1e-12 78.6 146 31.5
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 2.4e-12 77.4 141 31.9
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.2e-11 75.1 64 56.2
AUR62033882 Chenopodium quinoa HOM05D003567 ORTHO05D004117 7.7e-11 72.4 73 57.5
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 1.3e-10 71.6 63 52.4
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 5.0e-10 69.7 64 46.9
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.9e-09 67.8 101 34.7
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 1.4e-07 61.6 134 30.6
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 1.1e-06 58.5 109 33.9


User provided reference genes

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