Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 3648.2 1887 100.0
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 3033.0 1896 83.9
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2999.5 1896 83.3
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2805.0 1897 77.5
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2761.9 1905 75.3
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2651.7 1907 72.6
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2581.2 1908 70.9
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2578.5 1919 70.3
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2578.1 1907 70.5
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2559.6 1907 70.0
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2554.6 1906 69.9
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2550.8 1909 69.2
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2545.0 1904 69.5
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2541.1 1933 68.4
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2536.9 1907 69.5
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2529.2 1908 69.1
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2509.2 1905 68.1
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2506.1 1907 68.3
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2499.5 1908 68.2
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2496.5 1907 67.6
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2494.9 1904 68.3
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2490.3 1964 66.3
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2479.9 1905 67.8
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2471.8 1905 67.3
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2469.5 1906 67.5
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2468.7 1902 67.7
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2467.6 1904 67.8
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2466.4 1903 68.1
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2466.0 1901 67.5
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2464.5 1905 67.9
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2463.3 1940 67.7
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2461.8 1912 67.4
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2459.9 1904 67.7
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2443.3 1918 67.0
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2442.2 1909 67.7
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2441.0 1922 67.0
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2429.1 1910 66.6
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2419.4 1907 66.0
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2419.0 1900 66.7
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2417.5 1905 66.5
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2414.8 1904 66.4
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2406.7 1906 65.0
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2399.4 1912 66.2
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2390.5 1904 65.9
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2387.1 1900 66.0
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2386.3 1974 64.7
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2383.2 1911 65.5
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2380.9 1907 66.3
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2380.1 1911 66.1
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2375.9 1905 64.6
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2374.0 1918 65.7
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2370.5 2040 63.2
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2369.7 1907 64.7
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2364.0 1911 65.0
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2354.7 1907 64.0
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2354.3 1908 65.0
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2334.7 1905 63.8
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2317.7 1968 62.8
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2316.2 1733 69.6
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2265.7 1905 61.9
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2263.8 1904 61.9
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2258.4 1910 62.0
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2256.1 2335 55.0
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2254.2 1906 62.0
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2253.4 1904 61.9
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2223.7 1940 61.9
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2204.1 1942 60.1
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2202.6 1906 60.7
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2199.9 2019 58.5
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2183.7 1908 60.5
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2178.3 1910 60.4
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2176.7 1652 68.5
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2173.7 1911 60.3
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2159.8 1899 60.8
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2118.2 1910 58.5
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2089.7 1606 67.6
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 1968.7 1527 68.0
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 1950.3 1493 67.9
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1894.4 1581 62.2
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1832.4 1449 66.1
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1783.5 1212 77.1
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1751.1 1425 64.6
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1722.2 1929 49.0
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1666.4 1924 48.0
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1645.9 1189 71.5
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1609.0 1938 47.0
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1577.0 1445 59.4
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1546.9 1934 45.3
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1545.8 1453 56.2
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1506.9 1898 48.4
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1286.6 1257 55.1
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1221.5 1964 39.1
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1209.9 840 71.5
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1153.7 712 85.0
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1140.9 971 63.0
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1135.2 1142 54.7
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.9e-305 1053.5 1251 48.5
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 1.7e-293 1013.8 780 65.3
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 5.0e-290 1002.3 1644 41.2
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 1.4e-276 957.6 783 61.9
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 2.8e-264 916.8 1644 39.0
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.9e-252 877.5 776 58.4
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 1.5e-214 751.5 1052 44.6
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 2.5e-212 744.2 698 57.3
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 2.5e-204 717.6 1052 40.4
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 1.5e-201 708.4 624 60.9
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.1e-199 702.2 1094 39.7
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.1e-191 675.6 700 52.9
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 7.8e-174 616.3 518 61.6
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.2e-169 602.4 513 61.8
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.2e-155 555.8 493 61.3
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.6e-126 459.1 400 59.0
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 5.1e-109 401.0 299 71.6
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 4.2e-103 381.3 433 54.3
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.1e-98 366.7 443 50.3
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.8e-93 349.4 230 79.6
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 6.7e-93 347.4 328 58.8
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 6.5e-88 330.9 329 58.1
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 6.5e-88 330.9 359 54.6
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 4.4e-84 318.2 278 59.0
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 7.5e-84 317.4 210 76.2
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 7.5e-84 317.4 330 53.6
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 2.8e-83 315.5 298 59.4
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.0e-80 307.0 347 49.0
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 3.6e-78 298.5 300 56.3
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 4.2e-71 275.0 266 58.3
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 4.4e-68 265.0 176 78.4
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.4e-60 238.4 182 67.6
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 3.6e-54 218.8 299 47.5
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 3.1e-53 215.7 216 56.5
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 8.9e-53 214.2 216 57.9
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 2.2e-51 209.5 331 42.3
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-48 200.7 226 49.6
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-48 200.7 226 49.6
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 1.3e-48 200.3 1720 22.3
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.5e-47 196.8 255 45.5
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 3.6e-46 192.2 402 36.3
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-42 180.6 400 35.0
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 2.3e-40 172.9 168 57.7
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 4.0e-37 162.2 172 56.4
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 8.9e-37 161.0 126 65.9
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 4.9e-35 155.2 116 70.7
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 2.1e-33 149.8 173 49.1
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 2.3e-32 146.4 326 33.1
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.1e-32 145.2 122 57.4
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.9e-31 143.3 778 24.0
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 3.6e-30 139.0 82 76.8
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 2.6e-28 132.9 117 59.8
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 4.4e-28 132.1 976 24.1
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 1.4e-26 127.1 121 57.9
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 7.1e-26 124.8 133 51.9
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 2.5e-23 116.3 75 76.0
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 2.1e-22 113.2 96 59.4
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 4.8e-22 112.1 265 33.6
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 8.1e-22 111.3 81 70.4
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.9e-21 108.2 134 43.3
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.2e-17 97.4 83 57.8
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 1.2e-17 97.4 106 50.0
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 6.7e-16 91.7 57 75.4
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 6.2e-14 85.1 55 72.7
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.8e-13 83.6 85 50.6
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 9.0e-13 81.3 106 40.6
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 7.6e-12 78.2 95 41.1
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 1.4e-10 73.9 74 54.1
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 2.5e-10 73.2 46 73.9
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 5.5e-10 72.0 37 83.8
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 2.7e-09 69.7 85 54.1
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 6.0e-09 68.6 91 46.2
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.0e-09 68.6 69 52.2
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.0e-08 67.8 64 48.4
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.7e-08 65.1 43 67.4
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 8.7e-08 64.7 34 82.4
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 4.3e-07 62.4 49 67.3
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.3e-06 60.8 44 63.6
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-06 60.8 39 71.8
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 1.6e-06 60.5 57 56.1
SEGI_02226 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.6e-06 60.5 83 37.3
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 3.7e-06 59.3 50 62.0


User provided reference genes

Program Settings