Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 0.0e+00 1806.2 887 100.0
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 5.1e-301 1037.7 769 68.9
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 1.0e-293 1013.4 851 62.5
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 1.3e-264 916.8 873 54.6
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 2.6e-236 822.8 930 48.5
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 2.7e-233 812.8 891 48.7
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 1.5e-228 797.0 899 49.6
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 5.7e-228 795.0 895 49.5
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 7.0e-226 788.1 899 49.1
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 1.6e-225 786.9 889 48.1
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 7.3e-223 778.1 888 47.1
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 9.5e-223 777.7 897 48.4
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 2.8e-222 776.2 884 47.9
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 8.9e-221 771.2 914 46.8
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 7.5e-220 768.1 901 47.9
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 1.7e-219 766.9 894 46.8
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 1.1e-218 764.2 898 47.2
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 1.9e-218 763.5 896 46.3
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 1.6e-217 760.4 887 47.9
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 1.3e-216 757.3 893 45.7
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 5.6e-215 751.9 894 45.5
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 9.5e-215 751.1 897 46.6
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 4.7e-214 748.8 892 45.5
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 4.6e-209 732.3 965 43.2
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 1.7e-208 730.3 916 45.3
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 4.7e-206 722.2 925 45.1
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 4.0e-205 719.2 892 43.8
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 3.4e-204 716.1 839 48.0
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 1.7e-203 713.8 891 44.9
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 1.4e-202 710.7 892 43.5
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 1.7e-195 687.2 890 42.9
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 1.2e-193 681.0 893 42.1
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 2.1e-193 680.2 884 44.2
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 6.0e-193 678.7 956 43.0
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 6.0e-193 678.7 801 47.7
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 2.8e-190 669.8 901 43.7
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 6.2e-190 668.7 893 42.4
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 6.9e-189 665.2 884 41.5
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 6.9e-189 665.2 888 41.9
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 1.5e-188 664.1 888 42.3
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 3.4e-188 662.9 929 40.4
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.7e-187 660.6 919 42.3
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 2.2e-187 660.2 881 42.8
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 1.7e-184 650.6 888 42.0
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 3.0e-184 649.8 906 41.3
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 8.7e-184 648.3 886 41.9
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 4.3e-183 646.0 891 41.3
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 1.3e-182 644.4 872 42.1
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 3.6e-182 642.9 891 40.9
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 4.8e-182 642.5 971 42.1
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 2.4e-181 640.2 675 52.3
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 2.9e-179 633.3 895 41.0
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 3.8e-179 632.9 918 40.7
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 7.1e-178 628.6 832 42.2
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 3.9e-176 622.9 833 43.6
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 2.8e-174 616.7 900 41.4
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 6.9e-173 612.1 692 48.3
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 1.3e-171 607.8 834 41.6
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 8.4e-171 605.1 893 40.5
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 1.0e-168 598.2 743 45.1
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 7.4e-167 592.0 868 40.8
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 6.9e-165 585.5 738 43.5
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 2.0e-156 557.4 881 37.5
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 6.5e-155 552.4 682 45.3
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 2.2e-147 527.3 506 53.2
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.9e-146 524.2 698 43.0
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 3.2e-146 523.5 890 36.9
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 2.1e-145 520.8 664 43.5
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 2.0e-143 514.2 895 35.9
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 7.0e-141 505.8 648 44.8
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 3.6e-137 493.4 888 35.7
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 2.8e-134 483.8 535 48.8
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 4.2e-122 443.4 502 47.0
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 1.3e-115 421.8 442 50.9
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 4.3e-114 416.8 819 34.3
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 5.9e-108 396.4 357 54.6
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 9.8e-95 352.4 552 38.0
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 3.2e-93 347.4 301 56.8
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 2.2e-78 298.1 389 45.8
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 1.1e-74 285.8 390 41.0
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 9.6e-74 282.7 897 27.2
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 5.3e-64 250.4 248 51.2
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 3.8e-62 244.2 310 43.2
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 3.3e-58 231.1 392 39.5
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 1.6e-57 228.8 919 25.9
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 6.0e-52 210.3 500 31.8
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.8e-51 208.8 189 57.1
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 1.8e-51 208.8 667 27.0
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 4.8e-49 200.7 215 51.2
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 9.0e-48 196.4 322 39.4
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 1.2e-47 196.1 188 52.1
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.7e-46 192.2 328 37.5
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 2.1e-44 185.3 220 44.5
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 1.6e-41 175.6 315 35.6
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 6.3e-41 173.7 97 87.6
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 2.4e-32 145.2 206 39.8
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.2e-28 132.9 162 43.2
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 1.2e-28 132.9 122 50.0
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 3.6e-28 131.3 171 40.9
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 3.0e-27 128.3 304 31.6
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 5.2e-27 127.5 140 47.9
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 5.2e-27 127.5 213 39.4
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 1.1e-26 126.3 145 44.1
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 1.8e-24 119.0 98 57.1
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 2.4e-24 118.6 94 55.3
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.2e-23 116.3 175 44.6
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 4.0e-19 101.3 101 47.5
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 5.2e-19 100.9 57 84.2
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 1.7e-17 95.9 78 56.4
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.1e-16 93.2 99 48.5
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 3.2e-13 81.6 67 53.7
CSS0035414 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 4.8e-09 67.8 57 50.9
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 5.4e-08 64.3 84 36.9
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 5.4e-08 64.3 233 24.9
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 1.2e-07 63.2 123 31.7
CSS0045256 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 7.7e-07 60.5 53 54.7
HanXRQChr01g0002011 Helianthus annuus HOM05D000530 ORTHO05D000621 7.7e-07 60.5 274 25.5
Medtr6g025290 Medicago truncatula HOM05D001219 ORTHO05D001017 2.2e-06 58.9 219 26.0
SGA_v2.0_scaffold1G00422 Striga asiatica HOM05D000530 ORTHO05D000621 2.2e-06 58.9 300 24.7
Manes.04G105600 Manihot esculenta HOM05D001219 ORTHO05D001017 2.9e-06 58.5 364 22.3
BcaB02g07305 Brassica carinata HOM05D000530 ORTHO05D000621 6.5e-06 57.4 299 26.8
BcaC08g45251 Brassica carinata HOM05D000530 ORTHO05D000621 8.5e-06 57.0 287 26.8
C06p28480 Brassica napus HOM05D000530 ORTHO05D000621 8.5e-06 57.0 287 26.8
BolC6t38017H Brassica oleracea HOM05D000530 ORTHO05D000621 8.5e-06 57.0 287 26.8
Glyma.07G026200 Glycine max HOM05D001219 ORTHO05D001017 8.5e-06 57.0 190 24.2
Sabra03G0131300 Salix brachista HOM05D001219 ORTHO05D001017 8.5e-06 57.0 359 21.7


User provided reference genes

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