Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 4.3e-114 414.8 234 100.0
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 1.5e-79 300.1 234 70.5
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 3.4e-79 298.9 232 69.8
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 4.2e-77 292.0 232 71.1
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 2.8e-65 252.7 259 56.4
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 7.7e-47 191.4 204 52.5
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 2.9e-46 189.5 233 47.2
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 5.0e-46 188.7 234 50.4
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 1.1e-42 177.6 231 48.1
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 2.0e-42 176.8 225 47.1
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 5.7e-42 175.3 202 50.5
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 4.8e-41 172.2 204 49.5
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 6.3e-41 171.8 204 51.0
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 1.4e-40 170.6 225 48.0
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 2.4e-40 169.9 238 47.5
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 1.2e-39 167.5 237 46.4
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 1.5e-39 167.2 208 49.0
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 4.5e-39 165.6 230 49.6
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 4.5e-39 165.6 235 45.1
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 4.5e-39 165.6 204 48.0
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 5.9e-39 165.2 214 47.7
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 1.3e-38 164.1 236 46.6
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 2.2e-38 163.3 225 46.7
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 2.2e-38 163.3 209 49.3
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 2.2e-38 163.3 235 46.4
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 6.5e-38 161.8 227 48.9
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 8.5e-38 161.4 234 45.3
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 8.5e-38 161.4 211 45.5
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 1.1e-37 161.0 232 43.1
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 1.4e-37 160.6 225 44.4
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 1.4e-37 160.6 207 45.4
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 3.2e-37 159.5 234 45.7
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 3.2e-37 159.5 232 44.4
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 4.2e-37 159.1 226 44.2
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 4.2e-37 159.1 223 45.7
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 4.2e-37 159.1 228 45.2
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 5.5e-37 158.7 207 44.9
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 7.2e-37 158.3 204 50.5
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 9.4e-37 157.9 233 45.5
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 9.4e-37 157.9 207 45.9
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.7e-36 156.4 215 44.2
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 4.7e-36 155.6 233 44.2
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 4.7e-36 155.6 209 41.1
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 7.9e-36 154.8 223 47.5
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 1.8e-35 153.7 226 45.1
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 3.0e-35 152.9 209 42.6
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 3.9e-35 152.5 213 44.1
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 3.9e-35 152.5 226 43.8
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 5.2e-35 152.1 226 42.9
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 5.2e-35 152.1 223 48.0
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 6.7e-35 151.8 233 44.6
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 8.8e-35 151.4 215 45.6
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 1.1e-34 151.0 225 43.1
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 2.0e-34 150.2 238 45.8
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 2.0e-34 150.2 207 48.8
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 2.6e-34 149.8 220 44.5
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 2.6e-34 149.8 213 44.6
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 3.3e-34 149.4 229 44.1
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 5.7e-34 148.7 234 41.0
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 2.8e-33 146.4 229 43.7
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 2.8e-33 146.4 213 43.7
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 2.8e-33 146.4 233 45.5
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 8.2e-33 144.8 234 42.3
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.1e-32 144.4 212 42.9
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 1.1e-32 144.4 215 45.6
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 1.1e-32 144.4 232 45.3
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 1.4e-32 144.1 223 42.2
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 3.1e-32 142.9 223 40.4
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 4.1e-32 142.5 206 41.7
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 7.0e-32 141.7 200 42.0
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 1.6e-31 140.6 220 41.8
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 1.6e-31 140.6 223 45.3
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 2.0e-31 140.2 212 41.0
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 3.8e-30 136.0 185 41.6
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 8.5e-30 134.8 211 40.3
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 1.1e-29 134.4 231 44.6
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 2.5e-29 133.3 223 39.0
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 5.5e-29 132.1 203 40.4
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 5.5e-29 132.1 238 40.8
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.2e-28 131.0 226 39.8
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.1e-28 130.2 217 41.9
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 2.7e-28 129.8 233 45.5
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 4.7e-28 129.0 232 36.6
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.0e-27 127.9 224 37.9
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.4e-27 127.5 220 38.6
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 3.0e-27 126.3 217 38.7
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 4.0e-27 125.9 202 39.6
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 4.0e-27 125.9 226 43.4
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 5.2e-27 125.6 226 43.4
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 8.8e-27 124.8 205 44.9
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 8.8e-27 124.8 226 42.0
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.2e-26 124.4 226 42.9
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 3.3e-26 122.9 228 37.3
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 4.4e-26 122.5 226 34.5
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 7.5e-26 121.7 230 46.5
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 9.7e-26 121.3 233 36.5
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 9.7e-26 121.3 232 34.1
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 9.7e-26 121.3 228 36.8
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 2.2e-25 120.2 209 36.8
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 2.2e-25 120.2 235 39.6
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.8e-25 119.8 175 44.0
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 2.8e-25 119.8 233 43.3
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 2.8e-25 119.8 226 41.6
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 2.8e-25 119.8 207 46.4
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 2.8e-25 119.8 215 44.7
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 6.3e-25 118.6 202 41.1
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 1.1e-24 117.9 235 43.4
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 3.1e-24 116.3 233 42.9
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 7.0e-24 115.2 225 40.9
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 1.2e-23 114.4 218 43.6
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 1.2e-23 114.4 219 45.2
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 1.2e-23 114.4 219 45.2
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 2.7e-23 113.2 234 39.7
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 4.5e-23 112.5 234 42.7
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 4.5e-23 112.5 222 32.0
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 4.5e-23 112.5 235 41.3
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 7.7e-23 111.7 218 35.3
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 1.3e-22 110.9 222 37.4
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 1.7e-22 110.5 219 46.6
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 1.7e-22 110.5 219 46.6
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 1.7e-22 110.5 219 46.6
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 1.7e-22 110.5 241 41.9
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 1.7e-22 110.5 228 33.8
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 1.7e-22 110.5 155 43.2
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 8.5e-22 108.2 202 37.1
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 8.5e-22 108.2 221 43.4
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 1.1e-21 107.8 233 40.3
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 1.1e-21 107.8 233 33.0
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 1.5e-21 107.5 213 39.9
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 3.2e-21 106.3 203 40.9
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 4.2e-21 105.9 235 32.3
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 6.1e-20 102.1 236 38.1
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 6.1e-20 102.1 211 33.6
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 2.3e-19 100.1 204 37.7
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.5e-18 97.4 226 31.9
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 2.0e-18 97.1 182 47.3
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 7.7e-15 85.1 184 34.8
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 7.7e-15 85.1 140 40.7
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 2.3e-14 83.6 232 35.3
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.9e-13 80.5 165 30.9
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 1.2e-12 77.8 229 30.1
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 2.8e-12 76.6 179 39.7
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 8.0e-12 75.1 191 29.8
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 1.5e-10 70.9 104 42.3
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 1.8e-08 63.9 72 52.8
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 1.6e-07 60.8 72 50.0
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 2.7e-07 60.1 68 54.4
ATR1134G035 Amborella trichopoda HOM05D003097 ORTHO05D003437 1.0e-06 58.2 216 31.5
FAN23G2650 Fragaria x ananassa HOM05D003097 ORTHO05D003437 1.7e-06 57.4 194 34.5
Phvul.011G178100 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 5.0e-06 55.8 60 46.7
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 6.6e-06 55.5 111 36.0
RcHm_v2.0_Chr2g0099391 Rosa chinensis HOM05D003097 ORTHO05D003437 8.6e-06 55.1 220 32.7


User provided reference genes

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