Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 0.0e+00 1354.0 683 100.0
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 4.1e-258 894.8 569 81.0
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 6.5e-256 887.5 569 81.0
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 1.6e-249 866.3 571 78.6
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 8.0e-238 827.4 571 75.7
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 8.1e-214 747.7 464 81.0
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 1.1e-213 747.3 458 82.5
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 5.2e-213 745.0 464 80.8
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.4e-210 736.1 458 80.8
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 5.4e-210 734.9 468 79.7
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 5.4e-210 734.9 458 80.6
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 7.1e-210 734.6 458 81.0
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.1e-209 733.0 458 80.8
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 2.1e-209 733.0 486 75.7
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 2.7e-209 732.6 468 78.6
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 2.7e-209 732.6 469 78.0
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 6.0e-209 731.5 466 78.3
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 6.0e-209 731.5 483 77.0
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 7.8e-209 731.1 477 78.6
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 7.8e-209 731.1 464 80.0
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 1.7e-208 729.9 457 79.4
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.0e-208 729.2 458 80.6
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.1e-207 727.2 490 75.3
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.5e-207 726.1 457 79.6
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 2.5e-207 726.1 457 79.4
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 2.1e-206 723.0 453 78.8
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.2e-206 721.5 458 78.6
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.1e-205 720.7 459 77.6
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.4e-205 720.3 465 77.0
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.8e-205 719.9 455 78.5
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.8e-205 719.9 487 74.7
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.8e-205 719.9 473 76.1
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 5.3e-205 718.4 549 68.7
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 6.9e-205 718.0 539 69.4
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 6.9e-205 718.0 457 78.1
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 6.9e-205 718.0 474 76.4
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 9.0e-205 717.6 459 78.0
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 9.0e-205 717.6 456 78.7
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 1.5e-204 716.8 456 77.9
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 1.5e-204 716.8 457 77.5
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 4.5e-204 715.3 460 78.5
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 5.8e-204 714.9 533 69.8
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 7.6e-204 714.5 455 77.4
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 7.6e-204 714.5 444 80.4
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 9.9e-204 714.1 454 78.9
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.3e-203 713.8 473 76.7
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 2.9e-203 712.6 450 78.7
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.9e-203 711.8 457 78.6
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 6.4e-203 711.4 533 69.2
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 6.4e-203 711.4 462 76.6
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 8.4e-203 711.1 444 80.0
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 1.1e-202 710.7 455 77.8
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 1.4e-202 710.3 506 71.3
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 1.9e-202 709.9 467 76.9
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 4.2e-202 708.8 488 73.0
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 4.2e-202 708.8 472 76.7
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 5.4e-202 708.4 477 75.5
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 2.1e-201 706.4 465 76.3
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 3.5e-201 705.7 533 69.0
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 6.0e-201 704.9 452 78.8
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.0e-200 704.1 463 74.9
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.3e-200 703.0 457 76.6
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.0e-200 702.6 457 78.1
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 6.7e-200 701.4 456 76.8
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.5e-199 700.3 458 76.4
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.9e-199 699.9 459 76.0
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.3e-198 697.2 445 79.1
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.3e-198 697.2 465 75.5
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.1e-198 696.4 461 75.5
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 4.8e-198 695.3 519 69.2
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.1e-197 694.1 445 77.8
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.4e-197 693.7 440 79.3
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.4e-197 693.0 465 75.3
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.4e-197 693.0 444 77.7
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.4e-197 693.0 455 76.7
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 3.1e-197 692.6 440 79.3
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 5.3e-197 691.8 445 76.6
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 5.3e-197 691.8 445 76.6
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.2e-196 690.6 444 77.7
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 1.2e-196 690.6 457 75.1
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.5e-196 690.3 461 75.3
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.5e-196 690.3 472 73.9
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.5e-196 690.3 457 75.7
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.5e-196 690.3 476 72.7
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.6e-196 689.5 461 75.1
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 5.8e-196 688.3 458 75.5
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 7.6e-196 688.0 459 74.9
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 9.9e-196 687.6 469 73.8
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 2.9e-195 686.0 480 71.2
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 3.8e-195 685.6 494 71.1
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 4.9e-195 685.3 454 74.4
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.9e-194 683.3 444 77.0
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.6e-193 680.2 449 75.5
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 2.7e-193 679.5 444 75.7
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 3.5e-193 679.1 495 69.5
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 6.0e-193 678.3 454 72.9
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.3e-192 677.2 507 70.0
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.8e-192 676.8 463 73.4
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 2.3e-192 676.4 445 76.2
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 3.9e-192 675.6 445 76.2
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 3.9e-192 675.6 445 76.2
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.1e-191 674.1 464 72.8
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.5e-191 672.9 464 72.8
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 3.3e-191 672.5 477 71.5
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 4.3e-191 672.2 463 73.0
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 4.3e-191 672.2 472 73.9
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 2.4e-189 666.4 445 75.3
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 5.3e-189 665.2 445 74.4
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 3.2e-186 656.0 473 71.5
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 4.2e-186 655.6 453 70.4
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.1e-186 654.8 457 74.2
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.2e-180 637.5 421 77.0
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.4e-180 636.0 450 72.0
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 1.6e-177 627.1 444 69.6
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.1e-177 626.7 459 68.0
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 1.3e-174 617.5 479 64.7
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.9e-172 608.6 456 65.8
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 4.4e-167 592.4 450 65.3
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 7.7e-164 581.6 384 75.0
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.5e-148 529.3 325 83.1
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 8.5e-147 525.0 344 77.0
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 7.0e-141 505.4 333 76.3
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.7e-139 500.7 315 80.0
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 4.2e-138 496.1 452 56.2
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 8.0e-137 491.9 447 58.4
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 9.8e-135 485.0 447 55.9
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 9.2e-133 478.4 346 70.8
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.6e-132 477.6 315 77.5
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 5.9e-132 475.7 319 74.6
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 1.7e-123 447.6 277 79.4
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.5e-122 444.5 315 72.4
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.0e-115 421.8 281 76.9
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 1.5e-114 417.9 442 51.8
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.3e-102 378.3 446 44.8
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 6.9e-96 355.9 244 74.2
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.9e-93 347.8 456 43.0
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.3e-75 288.5 175 78.3
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 8.4e-70 269.2 383 40.7
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 7.1e-69 266.2 229 63.8
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.3e-51 208.0 135 74.1
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.0e-50 204.9 196 60.7
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 5.5e-45 186.8 128 73.4
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 3.9e-43 180.6 180 52.2
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 5.7e-42 176.8 120 68.3
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.0e-40 169.9 131 65.6
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.0e-30 139.4 94 66.0
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.4e-27 129.0 89 68.5
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.4e-27 129.0 91 65.9
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.4e-27 129.0 91 65.9
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 2.3e-27 128.3 108 66.7
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 1.5e-26 125.6 80 72.5
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.3e-25 122.5 80 71.2
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 1.7e-25 122.1 80 71.2
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 8.3e-25 119.8 77 71.4
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 1.6e-23 115.5 78 67.9
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 8.0e-20 103.2 77 62.3
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 8.0e-20 103.2 77 62.3
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 2.3e-19 101.7 77 61.0
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 2.3e-19 101.7 138 47.8
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 4.4e-18 97.4 267 28.1
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.4e-16 92.4 57 77.2


User provided reference genes

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