Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 6378.1 3225 100.0
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 4633.6 3223 73.7
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 4138.6 3151 68.2
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 3689.8 3249 59.5
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 3042.3 3259 51.6
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2614.3 3314 45.5
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 2561.2 3277 44.7
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 2543.5 3265 44.5
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 2530.0 3281 44.1
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 2479.1 3270 44.1
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2468.7 3289 43.3
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 2466.0 3277 43.6
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2459.1 3328 43.1
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2432.5 3504 41.7
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 2429.4 3276 43.0
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2413.6 3011 45.6
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 2412.9 3282 43.0
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2407.9 3328 42.3
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2402.5 3297 42.9
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2387.8 3287 42.6
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2380.5 3322 41.8
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2376.3 3328 42.0
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2358.6 3272 42.8
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 2347.0 3272 42.4
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2339.7 3282 43.1
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2308.1 3281 41.3
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2289.6 3395 41.0
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2289.2 3292 40.9
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2279.6 3290 41.2
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2276.9 1862 64.8
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2274.6 3262 41.0
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2274.6 3930 37.0
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2254.9 3266 40.8
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2254.6 3277 40.6
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2249.6 3273 40.8
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2245.7 3280 40.7
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2243.0 3304 41.2
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2233.4 3262 41.7
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2231.4 3279 40.5
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2224.1 3362 40.1
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2220.7 2919 43.7
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2200.2 3290 39.9
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2192.2 3281 40.0
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 2175.2 3249 40.5
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2173.7 2978 43.3
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2172.5 3307 40.2
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 2166.7 3240 40.5
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2129.4 3296 39.7
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2117.4 3300 39.2
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2114.7 3274 39.3
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2098.2 3281 39.8
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 2093.9 3227 40.1
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2091.6 3287 38.9
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2085.1 3299 38.8
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 2073.5 2132 52.4
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2063.5 3286 39.2
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2051.9 3150 39.6
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2041.9 3281 38.3
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2041.9 3281 38.3
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 2030.4 3323 37.7
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2028.4 3270 38.3
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 2006.1 3259 37.7
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2002.3 3351 38.2
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1995.3 3275 37.6
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1952.6 3083 39.0
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1950.3 3277 38.7
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1949.1 3286 38.7
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1941.8 1216 80.3
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1918.3 3345 37.5
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1884.0 2958 38.7
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1880.1 2548 42.5
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1854.7 2294 44.9
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1835.5 2345 44.8
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1755.7 1735 52.6
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1737.2 2878 37.6
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1722.2 1803 51.0
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1682.5 3319 34.3
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1673.3 2952 36.4
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1529.6 1690 48.9
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1511.5 1463 53.1
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1503.4 1389 55.1
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1503.0 1355 57.1
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1486.1 1310 57.0
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1457.6 1595 50.2
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1422.9 1382 52.8
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1374.4 1750 44.5
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1332.4 1239 55.4
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1293.9 1366 49.9
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1262.3 3258 30.7
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1214.9 2609 33.6
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1169.8 2059 36.6
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 0.0e+00 1118.6 1935 35.7
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 5.2e-303 1046.2 2553 30.7
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 3.7e-301 1040.0 2013 34.5
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 4.3e-289 1000.0 1327 43.3
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 5.8e-278 963.0 1102 46.7
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 3.8e-261 907.1 1426 40.0
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 2.8e-232 811.2 608 66.9
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 2.6e-225 788.1 1921 30.9
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 1.5e-209 735.7 1897 30.5
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.6e-195 689.1 670 54.5
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 1.2e-174 619.8 1755 28.7
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 5.6e-164 584.3 2141 26.0
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.3e-131 476.9 480 53.5
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 1.9e-127 463.0 1591 27.8
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 1.0e-125 457.2 973 33.5
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 4.3e-124 451.8 900 33.7
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 8.5e-112 411.0 919 33.2
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.1e-111 410.6 947 31.7
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 7.9e-110 404.4 463 46.9
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 1.0e-109 404.1 883 32.7
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 2.6e-108 399.4 1342 26.4
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 2.2e-104 386.3 1330 26.8
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.9e-103 383.3 1332 25.8
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 7.2e-95 354.8 861 30.4
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 6.1e-94 351.7 348 56.6
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 4.4e-92 345.5 924 29.0
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 3.1e-90 339.3 1206 26.1
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 3.5e-89 335.9 220 71.4
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 1.0e-88 334.3 889 30.0
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 3.1e-82 312.8 886 28.0
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 5.2e-77 295.4 224 63.4
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 1.4e-66 260.8 198 71.7
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.2e-60 241.1 210 58.6
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 3.5e-57 229.6 195 60.5
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 1.1e-55 224.6 408 39.0
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 2.3e-53 216.9 1247 24.7
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 3.5e-49 203.0 209 56.0
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 2.1e-46 193.7 164 62.2
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 2.1e-46 193.7 157 63.7
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 2.8e-46 193.4 163 62.6
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 1.4e-45 191.0 440 28.0
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 4.0e-45 189.5 155 61.3
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 5.2e-45 189.1 105 84.8
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-44 188.0 634 25.9
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 1.7e-43 184.1 696 26.3
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 4.9e-35 156.0 175 49.7
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 9.6e-31 141.7 1026 21.4
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 1.3e-30 141.4 210 41.4
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 8.1e-30 138.7 152 45.4
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 2.9e-27 130.2 113 54.0
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 7.9e-25 122.1 592 24.7
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 3.9e-24 119.8 171 38.0
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 2.8e-22 113.6 341 28.2
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 8.1e-22 112.1 197 40.1
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.2e-20 108.2 66 81.8
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 1.7e-19 104.4 215 28.4
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-14 85.9 676 22.8
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 6.2e-14 85.9 102 43.1
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 8.2e-14 85.5 119 43.7
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 1.4e-13 84.7 224 30.4
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 4.5e-12 79.7 199 27.1
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 2.9e-11 77.0 56 60.7
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 2.9e-11 77.0 167 29.3
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 3.8e-11 76.6 90 43.3
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 6.5e-11 75.9 615 21.0
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 7.1e-10 72.4 517 21.1
Eucgr.K01355 Eucalyptus grandis HOM05D002653 ORTHO05D002623 2.1e-09 70.9 247 25.5
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 7.9e-09 68.9 52 69.2
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 5.1e-08 66.2 707 19.4
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 6.7e-08 65.9 386 23.1
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 6.7e-08 65.9 620 19.2
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 6.7e-08 65.9 410 22.2
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 8.7e-08 65.5 370 20.5
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 9.7e-07 62.0 426 19.5
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 1.6e-06 61.2 294 20.7
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 2.8e-06 60.5 296 21.6
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 3.7e-06 60.1 436 22.0


User provided reference genes

Program Settings