Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 1.6e-266 922.2 455 100.0
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 4.0e-201 704.9 454 76.9
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 2.6e-200 702.2 454 76.4
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 1.9e-179 632.9 455 68.6
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 2.1e-141 506.5 458 55.5
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.4e-140 503.8 461 54.4
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 2.3e-140 503.1 455 54.9
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 2.6e-139 499.6 458 53.3
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 3.3e-139 499.2 456 54.2
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 3.1e-137 492.7 452 53.5
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 2.0e-136 490.0 456 52.9
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 4.5e-136 488.8 452 53.8
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 1.3e-135 487.3 457 53.2
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 2.2e-135 486.5 458 52.2
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 6.5e-135 485.0 454 53.3
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.9e-134 483.4 455 52.3
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.2e-134 482.6 455 52.3
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 3.2e-134 482.6 454 52.9
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 3.2e-134 482.6 448 53.1
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 9.4e-134 481.1 455 52.1
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 9.4e-134 481.1 455 51.9
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 1.2e-133 480.7 452 52.9
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.1e-133 479.9 455 52.1
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.7e-133 479.6 455 51.6
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 2.7e-133 479.6 455 52.3
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 3.6e-133 479.2 455 52.1
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 8.0e-133 478.0 455 51.9
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 8.0e-133 478.0 456 53.1
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 8.0e-133 478.0 455 52.3
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 8.0e-133 478.0 455 52.3
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 1.4e-132 477.2 455 51.9
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 1.4e-132 477.2 453 52.1
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 5.2e-132 475.3 454 53.1
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 6.7e-132 474.9 455 52.7
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 1.5e-131 473.8 455 52.5
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.0e-131 473.4 452 51.5
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 2.6e-131 473.0 458 52.4
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 7.5e-131 471.5 455 51.6
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 9.7e-131 471.1 458 53.3
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.7e-130 470.3 452 53.5
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 2.8e-130 469.5 458 50.9
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 6.3e-130 468.4 454 50.7
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 6.3e-130 468.4 453 51.4
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 8.2e-130 468.0 451 51.0
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 1.1e-129 467.6 450 51.3
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.4e-129 467.2 454 51.1
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 1.4e-129 467.2 455 51.4
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 4.1e-129 465.7 457 51.6
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 5.3e-129 465.3 453 51.9
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 9.1e-129 464.5 450 51.1
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.0e-128 463.4 460 50.7
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 4.5e-128 462.2 453 52.1
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 5.9e-128 461.8 453 51.9
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 7.7e-128 461.5 450 51.1
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 7.7e-128 461.5 455 50.5
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 7.7e-128 461.5 446 52.0
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.3e-127 460.7 451 50.1
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 2.2e-127 459.9 463 51.0
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 3.8e-127 459.1 457 52.1
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 3.8e-127 459.1 454 52.6
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 3.8e-127 459.1 454 50.4
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 5.0e-127 458.8 529 46.3
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 5.0e-127 458.8 452 50.2
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 6.5e-127 458.4 452 51.8
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.1e-126 457.6 532 45.5
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 1.1e-126 457.6 447 51.9
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 1.5e-126 457.2 452 49.8
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 1.9e-126 456.8 453 51.7
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 1.9e-126 456.8 449 50.1
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 4.2e-126 455.7 425 52.9
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 4.2e-126 455.7 464 50.6
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 1.6e-125 453.8 464 49.4
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 3.6e-125 452.6 458 50.7
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.6e-125 452.6 452 49.6
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.3e-124 449.9 455 49.5
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 6.8e-124 448.4 452 50.2
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 6.8e-124 448.4 457 49.9
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 8.8e-124 448.0 452 49.1
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.2e-123 447.6 452 49.1
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 3.4e-123 446.0 426 51.6
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 2.2e-122 443.4 560 43.2
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 2.8e-122 443.0 427 51.5
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 8.3e-122 441.4 426 51.2
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 1.1e-121 441.0 453 49.2
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 1.2e-120 437.6 455 50.5
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 2.7e-120 436.4 498 45.8
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 7.7e-120 434.9 454 49.6
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 4.2e-118 429.1 497 46.1
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 5.5e-118 428.7 435 50.1
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 7.2e-118 428.3 450 48.0
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 7.2e-118 428.3 449 48.1
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 9.5e-118 427.9 448 48.2
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 6.1e-117 425.2 448 47.3
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 5.7e-115 418.7 450 46.7
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 5.7e-115 418.7 450 46.4
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 7.5e-115 418.3 471 46.1
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 4.9e-114 415.6 448 47.8
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 7.0e-113 411.8 496 43.8
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 9.2e-113 411.4 448 46.9
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 3.5e-112 409.5 448 46.9
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 5.9e-112 408.7 497 43.3
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 7.8e-112 408.3 445 45.6
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 1.0e-111 407.9 461 45.6
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 1.7e-111 407.1 448 46.7
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 3.8e-111 406.0 404 50.5
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 2.5e-110 403.3 448 46.2
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 2.5e-110 403.3 448 46.2
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 5.2e-108 395.6 452 45.4
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 7.3e-102 375.2 378 50.5
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 7.3e-102 375.2 378 50.5
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 3.9e-95 352.8 448 42.0
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 3.3e-94 349.7 464 40.5
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 1.5e-91 340.9 465 38.7
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 9.9e-91 338.2 451 39.7
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 6.6e-79 298.9 265 53.6
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 7.3e-78 295.4 291 50.5
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.1e-76 291.6 257 52.5
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.4e-76 291.2 172 72.7
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 2.6e-75 287.0 380 43.2
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 5.4e-73 279.3 455 36.9
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.1e-68 265.0 143 78.3
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 5.3e-68 262.7 456 35.5
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 4.2e-65 253.1 152 71.7
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 8.7e-63 245.4 530 32.6
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.0e-60 236.5 139 74.8
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 3.8e-50 203.4 121 70.2
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.5e-43 181.4 87 87.4
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 1.4e-33 148.3 172 50.0
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 7.2e-33 146.0 235 37.4
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 7.4e-30 136.0 263 30.8
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 5.3e-28 129.8 76 71.1
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 5.2e-23 113.2 66 69.7
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 8.8e-23 112.5 62 77.4
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 8.8e-23 112.5 62 77.4
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 3.1e-20 104.0 59 69.5
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 1.3e-18 98.6 504 23.2
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 2.1e-16 91.3 67 61.2
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.5e-11 73.9 74 50.0
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 5.9e-11 73.2 67 49.3
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 3.2e-09 67.4 72 44.4


User provided reference genes

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