Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12883 Beta vulgaris HOM05D002129 ORTHO05D002188 0.0e+00 1295.8 795 100.0
AUR62010808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 5.6e-190 668.7 874 53.0
AUR62019807 Chenopodium quinoa HOM05D002129 ORTHO05D002188 3.8e-146 523.1 875 47.2
Ah.12g052300 Amaranthus hybridus HOM05D002129 ORTHO05D002188 1.3e-141 508.1 859 45.5
Sc01g0010120 Simmondsia chinensis HOM05D002129 ORTHO05D002188 3.6e-80 303.9 691 38.4
Sc07g0009950 Simmondsia chinensis HOM05D002129 ORTHO05D002188 5.6e-73 280.0 872 35.6
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 5.4e-36 157.1 884 25.0
QL02p031447 Quercus lobata HOM05D002129 ORTHO05D002188 5.6e-33 147.1 831 25.3
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 1.3e-32 146.0 808 25.4
FvH4_5g04071 Fragaria vesca HOM05D002129 ORTHO05D002188 5.3e-31 140.6 889 24.3
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 6.9e-31 140.2 872 24.0
FAN18G1710 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.6e-30 138.3 930 23.8
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 5.8e-30 137.1 860 26.7
PGSC0003DMG400004988 Solanum tuberosum HOM05D002129 ORTHO05D002188 5.8e-30 137.1 836 22.7
FAN04G1467 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.2e-29 135.2 961 23.1
Atru.chr9.2043 Acer truncatum HOM05D002129 ORTHO05D002188 2.9e-29 134.8 639 25.4
Sabra03G0098800 Salix brachista HOM05D002129 ORTHO05D002188 1.4e-28 132.5 845 25.1
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 1.9e-28 132.1 823 26.7
RcHm_v2.0_Chr7g0195441 Rosa chinensis HOM05D002129 ORTHO05D002188 2.7e-27 128.3 953 24.4
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 3.5e-27 127.9 820 25.5
Sopen12g028580 Solanum pennellii HOM05D002129 ORTHO05D002188 6.0e-27 127.1 823 23.5
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.3e-26 125.2 351 30.5
Solyc12g056060.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 1.1e-25 122.9 815 23.3
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.5e-25 122.5 351 30.2
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 1.9e-25 122.1 842 23.4
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.3e-25 120.9 404 28.0
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 9.6e-25 119.8 390 29.0
Cc08_g15770 Coffea canephora HOM05D002129 ORTHO05D002188 1.6e-24 119.0 835 24.9
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 2.1e-24 118.6 825 25.2
MELO3C016309.2 Cucumis melo HOM05D002129 ORTHO05D002188 1.1e-23 116.3 583 25.7
TPR.G3398 Trifolium pratense HOM05D002129 ORTHO05D002188 4.0e-23 114.4 822 24.7
CsaV3_4G006410 Cucumis sativus L. HOM05D002129 ORTHO05D002188 1.2e-22 112.8 497 27.8
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.5e-22 112.5 260 32.7
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 2.0e-22 112.1 263 33.1
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 7.6e-22 110.2 239 33.1
LjContig00312_ERROPOS870357g0010036 Lotus japonicus HOM05D002129 ORTHO05D002188 1.3e-21 109.4 384 30.2
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.9e-21 107.5 233 33.0
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 4.9e-21 107.5 262 32.8
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 4.9e-21 107.5 838 28.5
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 6.5e-21 107.1 833 22.7
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 1.9e-20 105.5 243 32.1
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 2.5e-20 105.1 306 28.4
CANSAT21G0822 Cannabis sativa HOM05D002129 ORTHO05D002188 3.2e-20 104.8 493 26.2
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 5.5e-20 104.0 546 27.3
Ciclev10024006m.g Citrus clementina HOM05D002129 ORTHO05D002188 5.5e-20 104.0 286 30.1
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 9.3e-20 103.2 820 23.7
FAN18G4347 Fragaria x ananassa HOM05D002129 ORTHO05D002188 9.3e-20 103.2 943 23.0
Peaxi162Scf00102g00176 Petunia axillaris HOM05D002129 ORTHO05D002188 9.3e-20 103.2 358 28.8
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 1.6e-19 102.4 805 26.8
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 2.1e-19 102.1 842 24.5
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 7.9e-19 100.1 446 26.5
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.3e-18 99.4 805 27.3
Duzib205G1563 Durio zibethinus HOM05D002129 ORTHO05D002188 2.3e-18 98.6 381 27.8
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 3.9e-18 97.8 375 26.7
Sed0025225 Sechium edule HOM05D002129 ORTHO05D002188 6.7e-18 97.1 242 31.4
Ca_17496_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 1.5e-17 95.9 563 27.2
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 1.5e-17 95.9 385 24.7
arahy.Tifrunner.gnm1.ann1.X2XLI1 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.9e-17 95.5 800 23.1
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 3.3e-17 94.7 238 29.4
Oeu042385.1 Olea europaea HOM05D002129 ORTHO05D002188 7.4e-17 93.6 139 38.8
Lalb_Chr16g0376981 Lupinus albus HOM05D002129 ORTHO05D002188 3.7e-16 91.3 312 29.2
SalBow8G3978 Salvia bowleyana HOM05D002129 ORTHO05D002188 3.7e-16 91.3 314 28.0
Lj4g0006933 Lotus japonicus HOM05D002129 ORTHO05D002188 8.2e-16 90.1 787 23.5
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 8.2e-16 90.1 824 24.5
Sed0023438 Sechium edule HOM05D002129 ORTHO05D002188 8.2e-16 90.1 479 25.3
Migut.A00679 Erythranthe guttata HOM05D002129 ORTHO05D002188 1.4e-15 89.4 318 26.7
AT1G64320 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 4.1e-15 87.8 244 31.1
AL7G47480 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 6.9e-15 87.0 251 33.5
HanXRQChr17g0535111 Helianthus annuus HOM05D002129 ORTHO05D002188 1.2e-14 86.3 233 32.2
Medtr8g099265 Medicago truncatula HOM05D002129 ORTHO05D002188 4.5e-14 84.3 823 21.4
Nitab4.5_0005112g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 4.5e-14 84.3 811 24.8
Psat7g027480 Pisum sativum HOM05D002129 ORTHO05D002188 4.5e-14 84.3 372 25.0
ECA246G1519 Erigeron canadensis HOM05D002129 ORTHO05D002188 1.0e-13 83.2 234 30.3
QL12p009828 Quercus lobata HOM05D002129 ORTHO05D002188 1.0e-13 83.2 786 27.1
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.3e-13 82.8 842 24.7
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 1.3e-13 82.8 960 24.9
QL12p010595 Quercus lobata HOM05D002129 ORTHO05D002188 1.7e-13 82.4 786 27.1
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 2.9e-13 81.6 213 29.1
COL.COLO4_21719 Corchorus olitorius HOM05D002129 ORTHO05D002188 2.9e-13 81.6 866 25.8
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 2.9e-13 81.6 361 28.8
HanXRQChr10g0292651 Helianthus annuus HOM05D002129 ORTHO05D002188 3.8e-13 81.3 397 27.0
Lalb_Chr05g0224251 Lupinus albus HOM05D002129 ORTHO05D002188 3.8e-13 81.3 802 22.6
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 6.5e-13 80.5 237 30.4
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 1.1e-12 79.7 725 23.4
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 1.1e-12 79.7 414 26.8
AT5G41780 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 2.5e-12 78.6 382 26.4
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 4.2e-12 77.8 166 34.9
Peaxi162Scf00117g00131 Petunia axillaris HOM05D002129 ORTHO05D002188 4.2e-12 77.8 827 26.5
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 4.2e-12 77.8 775 22.3
BcaB02g07879 Brassica carinata HOM05D002129 ORTHO05D002188 5.5e-12 77.4 383 26.1
CARHR046640 Cardamine hirsuta HOM05D002129 ORTHO05D002188 5.5e-12 77.4 548 27.4
Oeu042386.1 Olea europaea HOM05D002129 ORTHO05D002188 7.2e-12 77.0 467 23.3
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 1.2e-11 76.3 383 27.4
AUR62019808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 1.2e-11 76.3 239 28.9
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.2e-11 76.3 166 33.1
Thhalv10028203m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 1.6e-11 75.9 227 32.6
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 2.1e-11 75.5 637 25.7
BcaB07g31454 Brassica carinata HOM05D002129 ORTHO05D002188 2.7e-11 75.1 239 29.7
A07p20910 Brassica napus HOM05D002129 ORTHO05D002188 2.7e-11 75.1 255 31.0
Gohir.A08G099784 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.6e-11 74.7 844 23.0
Sp2g00440 Schrenkiella parvula HOM05D002129 ORTHO05D002188 3.6e-11 74.7 239 31.0
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 6.1e-11 73.9 834 23.4
BraA07t29778Z Brassica rapa HOM05D002129 ORTHO05D002188 7.9e-11 73.6 375 26.7
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 1.0e-10 73.2 737 22.8
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 1.0e-10 73.2 225 26.2
A09p14800 Brassica napus HOM05D002129 ORTHO05D002188 1.3e-10 72.8 239 30.5
BraA09t37126Z Brassica rapa HOM05D002129 ORTHO05D002188 1.3e-10 72.8 239 30.5
Carub.0007s3360 Capsella rubella HOM05D002129 ORTHO05D002188 1.3e-10 72.8 238 29.0
arahy.Tifrunner.gnm1.ann1.CM611Z Arachis hypogaea HOM05D002129 ORTHO05D002188 1.8e-10 72.4 801 22.1
C09p17920 Brassica napus HOM05D002129 ORTHO05D002188 1.8e-10 72.4 239 31.0
BolC9t54689H Brassica oleracea HOM05D002129 ORTHO05D002188 1.8e-10 72.4 239 31.0
Gohir.A02G102300 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.8e-10 72.4 354 26.0
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 1.8e-10 72.4 686 20.8
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.3e-10 72.0 166 33.1
Solyc08g008260.2 Solanum lycopersicum HOM05D002129 ORTHO05D002188 2.3e-10 72.0 856 25.0
CAN.G792.47 Capsicum annuum HOM05D002129 ORTHO05D002188 3.0e-10 71.6 884 24.9
Gohir.D03G081800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.0e-10 71.6 360 25.6
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 3.0e-10 71.6 864 23.4
BcaC04g22558 Brassica carinata HOM05D002129 ORTHO05D002188 5.1e-10 70.9 239 30.5
Gorai.003G081800 Gossypium raimondii HOM05D002129 ORTHO05D002188 5.1e-10 70.9 360 25.8
Sopen08g030310 Solanum pennellii HOM05D002129 ORTHO05D002188 8.7e-10 70.1 254 26.4
Migut.A00678 Erythranthe guttata HOM05D002129 ORTHO05D002188 1.1e-09 69.7 229 27.5
THA.LOC104809342 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 1.1e-09 69.7 241 27.0
BcaC08g44555 Brassica carinata HOM05D002129 ORTHO05D002188 1.5e-09 69.3 382 26.2
BolC6t37201H Brassica oleracea HOM05D002129 ORTHO05D002188 1.5e-09 69.3 382 26.2
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.5e-09 69.3 166 32.5
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 1.9e-09 68.9 566 21.9
Solyc08g082010.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 2.5e-09 68.6 252 25.8
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 4.3e-09 67.8 183 29.5
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 7.4e-09 67.0 427 22.0
Eucgr.E00844 Eucalyptus grandis HOM05D002129 ORTHO05D002188 1.6e-08 65.9 164 29.9
Ah.12g052310 Amaranthus hybridus HOM05D002129 ORTHO05D002188 2.2e-08 65.5 223 26.5
CARHR212790 Cardamine hirsuta HOM05D002129 ORTHO05D002188 2.8e-08 65.1 350 30.3
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 3.7e-08 64.7 246 26.4
AL2G10620 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 4.8e-08 64.3 610 25.9
PGSC0003DMG400012303 Solanum tuberosum HOM05D002129 ORTHO05D002188 4.8e-08 64.3 244 26.2
TAR374G1003 Trochodendron aralioides HOM05D002129 ORTHO05D002188 6.3e-08 63.9 253 24.1
Gorai.004G135400 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.1e-07 63.2 848 21.8
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 1.1e-07 63.2 895 21.3
Nitab4.5_0002213g0050 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.1e-07 63.2 823 23.0
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 1.8e-07 62.4 167 30.5
Lj4g0008940 Lotus japonicus HOM05D002129 ORTHO05D002188 2.4e-07 62.0 171 29.8
THA.LOC104823609 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 2.4e-07 62.0 380 27.4
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 3.1e-07 61.6 342 22.8
Glyma.08G021300 Glycine max HOM05D002129 ORTHO05D002188 4.1e-07 61.2 389 24.7
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 5.3e-07 60.8 202 26.7
CAN.G825.42 Capsicum annuum HOM05D002129 ORTHO05D002188 1.2e-06 59.7 235 26.4
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 1.5e-06 59.3 382 24.3
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 1.5e-06 59.3 408 23.3
Phvul.002G163000 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 2.0e-06 58.9 375 22.9
Carub.0002s0049 Capsella rubella HOM05D002129 ORTHO05D002188 2.6e-06 58.5 658 27.1
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 3.4e-06 58.2 195 25.6
Thhalv10024082m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 7.7e-06 57.0 554 26.0
Peaxi162Scf00074g01134 Petunia axillaris HOM05D002129 ORTHO05D002188 7.7e-06 57.0 411 27.5


User provided reference genes

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