Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 0.0e+00 1624.8 1023 100.0
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 2.3e-180 637.1 1020 46.7
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 1.6e-157 561.2 1029 40.8
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 6.5e-151 539.3 1019 43.2
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 2.6e-83 314.7 730 35.9
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 2.7e-43 181.8 505 31.3
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 4.5e-43 181.0 262 40.8
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 4.5e-43 181.0 1053 26.2
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 5.5e-41 174.1 306 35.9
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 1.2e-40 172.9 546 29.1
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 2.1e-40 172.2 358 33.2
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 3.6e-40 171.4 536 29.9
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 8.8e-39 166.8 286 36.4
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.2e-38 166.4 316 32.9
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 1.5e-38 166.0 324 31.5
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.0e-38 165.6 570 27.7
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 4.4e-38 164.5 253 37.5
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 5.7e-38 164.1 581 26.9
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 2.8e-37 161.8 298 35.6
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 6.3e-37 160.6 454 30.2
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 8.3e-37 160.2 340 33.8
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 5.4e-36 157.5 329 33.4
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 6.6e-34 150.6 338 32.2
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 1.1e-33 149.8 362 30.1
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 1.1e-33 149.8 299 34.4
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.1e-33 149.8 527 28.7
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.5e-33 149.4 310 33.2
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 4.2e-33 147.9 320 32.5
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.2e-32 146.4 568 26.6
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 6.8e-31 140.6 570 25.8
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 6.8e-31 140.6 328 31.7
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.5e-30 139.4 261 32.6
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.5e-30 139.4 261 32.6
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 2.2e-29 135.6 332 30.7
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 4.9e-29 134.4 305 32.1
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 5.4e-28 131.0 256 32.8
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 7.8e-27 127.1 638 24.0
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 4.3e-25 121.3 273 31.5
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 3.6e-24 118.2 301 29.9
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 3.6e-24 118.2 290 32.1
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 1.0e-23 116.7 656 25.2
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.8e-23 115.9 271 31.4
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 2.3e-23 115.5 364 26.4
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 3.1e-23 115.2 360 27.2
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 4.0e-23 114.8 330 28.2
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 5.2e-23 114.4 267 34.5
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 6.8e-23 114.0 135 44.4
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 3.4e-22 111.7 300 29.7
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 4.4e-22 111.3 363 27.8
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 7.5e-22 110.5 177 36.2
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 9.8e-22 110.2 177 34.5
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 9.8e-22 110.2 227 31.3
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 1.3e-21 109.8 324 27.8
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 3.7e-21 108.2 330 28.2
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 8.3e-21 107.1 364 26.9
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 8.3e-21 107.1 308 27.3
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 8.3e-21 107.1 348 28.7
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 9.2e-20 103.6 207 35.3
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.2e-19 103.2 212 34.4
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 1.2e-19 103.2 332 27.7
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 6.0e-19 100.9 330 28.8
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 1.3e-18 99.8 530 24.2
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 1.3e-18 99.8 184 34.8
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 3.9e-18 98.2 254 32.3
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 6.6e-18 97.4 279 29.4
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.5e-17 96.3 293 28.0
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 1.5e-17 96.3 185 35.1
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.9e-17 95.9 210 33.3
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 3.3e-17 95.1 245 29.4
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 3.3e-17 95.1 201 32.8
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.3e-17 95.1 516 23.8
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 9.5e-17 93.6 408 26.7
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.1e-16 92.4 234 29.5
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 2.1e-16 92.4 243 30.0
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 6.2e-16 90.9 509 23.8
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 8.0e-16 90.5 154 37.7
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 2.3e-15 89.0 480 25.8
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 3.1e-15 88.6 246 26.8
Zm00001eb048990 Zea mays HOM05D003520 ORTHO05D003332 4.0e-15 88.2 251 25.9
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 8.9e-15 87.0 188 30.3
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 2.6e-14 85.5 263 28.5
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 2.6e-14 85.5 178 33.7
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 2.6e-14 85.5 189 31.7
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 2.6e-14 85.5 256 28.1
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 3.4e-14 85.1 350 24.0
TAR636G1398 Trochodendron aralioides HOM05D003520 ORTHO05D003332 5.8e-14 84.3 111 41.4
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 7.5e-14 84.0 277 27.4
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 7.5e-14 84.0 180 32.2
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.3e-13 83.2 195 31.8
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 1.3e-13 83.2 197 30.5
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 1.7e-13 82.8 163 38.7
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 2.2e-13 82.4 194 32.0
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 2.9e-13 82.0 214 30.8
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 8.3e-13 80.5 276 27.5
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 8.3e-13 80.5 257 28.0
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 1.1e-12 80.1 222 29.3
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 1.4e-12 79.7 181 32.0
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.9e-12 79.3 196 31.1
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 1.9e-12 79.3 269 26.0
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 3.2e-12 78.6 168 30.4
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 4.1e-12 78.2 178 30.3
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 5.4e-12 77.8 181 30.4
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 5.4e-12 77.8 168 32.1
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.6e-11 76.3 264 26.9
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.6e-11 76.3 264 28.8
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.6e-11 76.3 552 23.4
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 2.7e-11 75.5 271 28.0
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 2.7e-11 75.5 281 26.0
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 3.5e-11 75.1 253 27.3
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 4.6e-11 74.7 574 21.8
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 6.0e-11 74.3 179 29.6
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 1.0e-10 73.6 596 22.5
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 1.0e-10 73.6 248 25.0
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.3e-10 73.2 204 28.9
Os04g0273900 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 1.7e-10 72.8 277 24.5
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 1.7e-10 72.8 168 29.2
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 5.1e-10 71.2 214 29.4
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 5.1e-10 71.2 179 29.6
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 6.6e-10 70.9 269 28.6
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 6.6e-10 70.9 146 29.5
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 8.6e-10 70.5 181 28.2
Zm00001eb376080 Zea mays HOM05D003520 ORTHO05D003332 8.6e-10 70.5 194 26.8
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.1e-09 70.1 172 36.0
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 1.1e-09 70.1 58 51.7
Oeu048797.1 Olea europaea HOM05D003520 ORTHO05D003332 1.5e-09 69.7 108 37.0
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 1.9e-09 69.3 247 28.3
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 5.6e-09 67.8 181 29.3
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 9.5e-09 67.0 565 20.0
Oeu048798.1 Olea europaea HOM05D003520 ORTHO05D003332 1.2e-08 66.6 113 35.4
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 1.6e-08 66.2 207 30.9
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 2.1e-08 65.9 110 37.3
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 2.1e-08 65.9 347 27.1
GSVIVG01019811001 Vitis vinifera HOM05D000016 ORTHO05D000109 2.1e-08 65.9 95 44.2
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 2.8e-08 65.5 130 36.9
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 2.8e-08 65.5 78 39.7
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 2.8e-08 65.5 139 30.2
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 3.6e-08 65.1 86 37.2
THA.LOC104809412 Tarenaya hassleriana HOM05D012020 ORTHO05D013949 4.7e-08 64.7 202 26.2
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 6.2e-08 64.3 580 20.2
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.1e-07 63.5 189 25.4
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.4e-07 63.2 83 45.8
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 2.3e-07 62.4 183 27.3
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 3.1e-07 62.0 93 35.5
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 4.0e-07 61.6 93 36.6
Rhsim03G0179300 Rhododendron simsii HOM05D003520 ORTHO05D003332 5.2e-07 61.2 115 36.5
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.2e-06 60.1 77 37.7
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.5e-06 59.7 114 35.1
Zm00001eb420370 Zea mays HOM05D003520 ORTHO05D003332 1.5e-06 59.7 455 22.0
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 2.0e-06 59.3 83 37.3
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 2.6e-06 58.9 64 40.6
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 2.6e-06 58.9 166 31.3
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 3.4e-06 58.5 478 23.8
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 3.4e-06 58.5 478 23.8
Glyma.16G194400 Glycine max HOM05D003520 ORTHO05D003332 5.8e-06 57.8 146 29.5
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 7.5e-06 57.4 158 32.3
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 7.5e-06 57.4 86 44.2
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 9.9e-06 57.0 178 27.0
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 9.9e-06 57.0 112 33.9


User provided reference genes

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