Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.2e-106 389.8 189 100.0
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 5.1e-41 171.8 137 68.6
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.1e-41 171.8 153 63.4
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.9e-40 169.9 134 67.9
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 4.4e-37 158.7 133 64.7
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.4e-30 137.1 133 56.4
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.4e-30 137.1 133 56.4
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.8e-30 136.7 134 56.0
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.8e-30 136.7 133 57.1
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 4.0e-30 135.6 133 54.9
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 5.3e-30 135.2 133 54.9
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 5.3e-30 135.2 133 54.9
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 5.3e-30 135.2 133 54.9
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 6.9e-30 134.8 133 55.6
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 9.0e-30 134.4 153 50.3
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 1.5e-29 133.7 133 54.1
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 2.6e-29 132.9 133 56.4
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.6e-29 132.9 134 56.0
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.4e-29 132.5 133 56.4
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 3.4e-29 132.5 133 53.4
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 9.9e-29 131.0 133 54.1
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.7e-28 130.2 137 53.3
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.7e-28 130.2 137 53.3
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 2.2e-28 129.8 133 54.1
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.2e-28 129.8 133 54.9
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.9e-28 129.4 133 54.1
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 3.8e-28 129.0 133 54.1
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 3.8e-28 129.0 133 54.1
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 8.4e-28 127.9 133 52.6
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 8.4e-28 127.9 136 50.0
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 8.4e-28 127.9 133 54.1
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 1.1e-27 127.5 134 50.7
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.1e-27 127.5 134 50.7
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.1e-27 127.5 134 50.7
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.1e-27 127.5 133 53.4
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 1.4e-27 127.1 133 52.6
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.9e-27 126.7 133 53.4
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.9e-27 126.7 156 49.4
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 2.4e-27 126.3 134 50.0
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 2.4e-27 126.3 137 51.1
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.4e-27 126.3 133 52.6
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 3.2e-27 125.9 134 50.0
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 3.2e-27 125.9 156 48.7
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 4.2e-27 125.6 133 50.4
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 4.2e-27 125.6 133 50.4
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 4.2e-27 125.6 134 51.5
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.2e-27 125.6 134 53.0
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 4.2e-27 125.6 133 53.4
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 4.2e-27 125.6 133 53.4
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 4.2e-27 125.6 133 53.4
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.1e-27 124.8 157 46.5
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 7.1e-27 124.8 134 53.7
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 7.1e-27 124.8 134 53.0
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 7.1e-27 124.8 133 50.4
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 9.3e-27 124.4 133 54.1
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 9.3e-27 124.4 133 54.1
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 1.6e-26 123.6 133 52.6
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.6e-26 123.6 134 52.2
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.6e-26 123.6 133 52.6
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.6e-26 123.6 134 52.2
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 2.1e-26 123.2 133 52.6
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 2.1e-26 123.2 133 52.6
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 2.1e-26 123.2 133 52.6
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 2.7e-26 122.9 134 53.7
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.7e-26 122.9 138 52.2
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 3.5e-26 122.5 133 50.4
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 3.5e-26 122.5 134 52.2
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 4.6e-26 122.1 131 51.9
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 4.6e-26 122.1 133 51.1
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 4.6e-26 122.1 133 51.1
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 4.6e-26 122.1 134 51.5
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.6e-26 122.1 138 51.4
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 6.0e-26 121.7 134 50.0
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 6.0e-26 121.7 134 52.2
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 6.0e-26 121.7 134 51.5
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 6.0e-26 121.7 134 52.2
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 7.9e-26 121.3 134 53.0
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 7.9e-26 121.3 134 51.5
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 1.0e-25 120.9 134 48.5
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.0e-25 120.9 134 53.0
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.0e-25 120.9 134 51.5
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.3e-25 120.6 132 50.8
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 1.8e-25 120.2 155 47.1
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.3e-25 119.8 154 44.2
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.3e-25 119.8 133 51.1
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 2.3e-25 119.8 134 48.5
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 2.3e-25 119.8 133 51.1
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 2.3e-25 119.8 133 51.9
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 3.0e-25 119.4 134 53.0
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.0e-25 119.4 133 50.4
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 3.0e-25 119.4 133 51.1
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.0e-25 119.4 134 51.5
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 3.0e-25 119.4 133 51.1
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 3.9e-25 119.0 134 52.2
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 3.9e-25 119.0 134 52.2
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 3.9e-25 119.0 134 52.2
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 3.9e-25 119.0 134 52.2
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 3.9e-25 119.0 134 52.2
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 3.9e-25 119.0 133 52.6
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 5.1e-25 118.6 155 43.2
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 5.1e-25 118.6 134 52.2
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 6.7e-25 118.2 134 51.5
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 8.7e-25 117.9 134 49.3
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 8.7e-25 117.9 134 51.5
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 1.1e-24 117.5 134 50.0
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.1e-24 117.5 134 51.5
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 1.1e-24 117.5 134 50.7
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.1e-24 117.5 133 48.1
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 1.1e-24 117.5 133 51.1
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.5e-24 117.1 138 50.0
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.5e-24 117.1 134 51.5
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.5e-24 117.1 134 51.5
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.5e-24 117.1 133 49.6
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.5e-24 117.1 132 50.0
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.9e-24 116.7 134 50.7
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.9e-24 116.7 154 45.5
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.9e-24 116.7 141 46.8
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 2.5e-24 116.3 134 47.8
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 4.3e-24 115.5 138 50.0
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 9.6e-24 114.4 134 50.7
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 9.6e-24 114.4 133 51.1
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.3e-23 114.0 136 47.1
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.6e-23 113.6 133 50.4
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 3.7e-23 112.5 132 50.0
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 4.8e-23 112.1 145 43.4
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 8.1e-23 111.3 134 49.3
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.8e-22 110.2 133 48.1
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 1.8e-22 110.2 133 47.4
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.8e-22 110.2 133 47.4
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 1.8e-22 110.2 132 49.2
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 2.4e-22 109.8 137 47.4
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 5.3e-22 108.6 133 47.4
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.3e-22 108.6 133 46.6
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.5e-21 107.1 154 44.8
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 3.4e-21 105.9 135 44.4
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 3.4e-21 105.9 134 47.0
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 5.8e-21 105.1 145 46.2
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.7e-20 103.6 145 42.8
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 3.8e-20 102.4 107 53.3
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 2.5e-19 99.8 108 51.9
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 7.9e-18 94.7 152 41.4
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 5.1e-17 92.0 133 44.4
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 1.3e-15 87.4 107 46.7
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 1.6e-15 87.0 98 50.0
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.4e-14 84.0 58 74.1
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 1.2e-13 80.9 132 38.6
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 1.3e-12 77.4 58 62.1
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 2.2e-12 76.6 99 47.5
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 2.9e-12 76.3 110 46.4
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 8.4e-12 74.7 131 38.9
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.1e-11 74.3 58 60.3
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 1.4e-11 73.9 58 60.3
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.2e-11 72.8 133 36.1
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.2e-11 72.8 133 36.1
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.2e-11 72.8 133 36.1
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.6e-10 70.5 37 83.8
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.3e-09 66.6 35 82.9
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 8.7e-09 64.7 40 72.5
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.1e-08 64.3 37 78.4
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 7.4e-08 61.6 31 83.9
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 2.8e-07 59.7 61 50.8


User provided reference genes

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