Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12108 Beta vulgaris HOM05D002254 ORTHO05D005423 4.6e-82 307.8 148 100.0
Gohir.A01G176800 Gossypium hirsutum HOM05D002254 ORTHO05D005423 2.7e-29 132.5 96 70.8
DCAR_001358 Daucus carota HOM05D002254 ORTHO05D005423 3.5e-29 132.1 96 69.8
Dinv24771 Davidia involucrata HOM05D002254 ORTHO05D005423 4.6e-29 131.7 96 70.8
Dinv30096 Davidia involucrata HOM05D002254 ORTHO05D005423 4.6e-29 131.7 96 70.8
AUR62013095 Chenopodium quinoa HOM05D002254 ORTHO05D005423 6.0e-29 131.3 96 70.8
Gohir.D01G167600 Gossypium hirsutum HOM05D002254 ORTHO05D005423 7.8e-29 131.0 96 69.8
Nitab4.5_0000250g0020 Nicotiana tabacum HOM05D002254 ORTHO05D005423 1.3e-28 130.2 96 68.8
Nitab4.5_0004141g0030 Nicotiana tabacum HOM05D002254 ORTHO05D005423 1.3e-28 130.2 96 68.8
Atru.chr4.828 Acer truncatum HOM05D002254 ORTHO05D005423 1.7e-28 129.8 96 68.8
Ah.01g009370 Amaranthus hybridus HOM05D002254 ORTHO05D005423 1.7e-28 129.8 96 70.8
Duzib264G0949 Durio zibethinus HOM05D002254 ORTHO05D005423 3.0e-28 129.0 96 68.8
Hma1.2p1_0183F.1_g080930 Hydrangea macrophylla HOM05D002254 ORTHO05D005423 3.0e-28 129.0 96 67.7
SalBow4G0817 Salvia bowleyana HOM05D002254 ORTHO05D005423 3.9e-28 128.6 94 68.1
EL10Ac9g21444 Beta vulgaris HOM05D002254 ORTHO05D005423 5.0e-28 128.3 96 70.8
Migut.H00743 Erythranthe guttata HOM05D002254 ORTHO05D005423 5.0e-28 128.3 94 68.1
Potri.007G107100 Populus trichocarpa HOM05D002254 ORTHO05D005423 5.0e-28 128.3 96 67.7
Thecc.01G127100 Theobroma cacao HOM05D002254 ORTHO05D005423 6.6e-28 127.9 96 69.8
AUR62010099 Chenopodium quinoa HOM05D002254 ORTHO05D005423 8.6e-28 127.5 96 69.8
Manes.12G153000 Manihot esculenta HOM05D002254 ORTHO05D005423 8.6e-28 127.5 92 70.7
Potri.005G061700 Populus trichocarpa HOM05D002254 ORTHO05D005423 8.6e-28 127.5 96 66.7
MSTRG.2664 Avicennia marina HOM05D002254 ORTHO05D005423 1.1e-27 127.1 94 68.1
Duzib147G0903 Durio zibethinus HOM05D002254 ORTHO05D005423 1.1e-27 127.1 96 67.7
Solyc08g067950.3 Solanum lycopersicum HOM05D002254 ORTHO05D005423 1.1e-27 127.1 94 68.1
Sopen08g021870 Solanum pennellii HOM05D002254 ORTHO05D005423 1.1e-27 127.1 94 68.1
TWI31G0091 Tripterygium wilfordii HOM05D002254 ORTHO05D005423 1.5e-27 126.7 92 69.6
Cc07_g18050 Coffea canephora HOM05D002254 ORTHO05D005423 1.9e-27 126.3 94 67.0
VMungo0647G1804 Vigna mungo HOM05D002254 ORTHO05D005423 1.9e-27 126.3 94 69.1
Lj2A603T35 Lonicera japonica HOM05D002254 ORTHO05D005423 2.5e-27 125.9 94 67.0
PGSC0003DMG400014486 Solanum tuberosum HOM05D002254 ORTHO05D005423 4.3e-27 125.2 94 67.0
Actinidia06650 Actinidia chinensis HOM05D002254 ORTHO05D005423 5.6e-27 124.8 96 65.6
EL10Ac5g11356 Beta vulgaris HOM05D002254 ORTHO05D005423 5.6e-27 124.8 92 75.0
BcaB04g19981 Brassica carinata HOM05D002254 ORTHO05D005423 5.6e-27 124.8 96 64.6
COL.COLO4_14017 Corchorus olitorius HOM05D002254 ORTHO05D005423 5.6e-27 124.8 96 65.6
PGR102G3355 Punica granatum HOM05D002254 ORTHO05D005423 5.6e-27 124.8 94 67.0
CSS0030870 Camellia sinensis var. sinensis HOM05D002254 ORTHO05D005423 7.3e-27 124.4 94 66.0
Psat5g056880 Pisum sativum HOM05D002254 ORTHO05D005423 7.3e-27 124.4 96 68.8
TAR381G1435 Trochodendron aralioides HOM05D002254 ORTHO05D005423 9.5e-27 124.0 96 67.7
CANSAT01G2903 Cannabis sativa HOM05D002254 ORTHO05D005423 1.2e-26 123.6 91 69.2
Cfa002830 Carpinus fangiana HOM05D002254 ORTHO05D005423 1.2e-26 123.6 90 67.8
Haze_25127 Corylus avellana HOM05D002254 ORTHO05D005423 1.2e-26 123.6 90 67.8
Gorai.002G208300 Gossypium raimondii HOM05D002254 ORTHO05D005423 1.2e-26 123.6 101 65.3
TWI75G1050 Tripterygium wilfordii HOM05D002254 ORTHO05D005423 1.2e-26 123.6 92 68.5
Carub.0006s0818 Capsella rubella HOM05D002254 ORTHO05D005423 1.6e-26 123.2 96 63.5
CAN.G679.3 Capsicum annuum HOM05D002254 ORTHO05D005423 1.6e-26 123.2 94 68.1
vmacro14290 Vaccinium macrocarpon HOM05D002254 ORTHO05D005423 1.6e-26 123.2 94 63.8
A09p08760 Brassica napus HOM05D002254 ORTHO05D005423 2.1e-26 122.9 96 63.5
C09p09930 Brassica napus HOM05D002254 ORTHO05D005423 2.1e-26 122.9 96 63.5
BolC9t53900H Brassica oleracea HOM05D002254 ORTHO05D005423 2.1e-26 122.9 96 63.5
BraA09t36526Z Brassica rapa HOM05D002254 ORTHO05D005423 2.1e-26 122.9 96 63.5
Oeu000401.1 Olea europaea HOM05D002254 ORTHO05D005423 2.1e-26 122.9 92 67.4
Oeu037798.1 Olea europaea HOM05D002254 ORTHO05D005423 2.1e-26 122.9 94 66.0
Oeu038989.2 Olea europaea HOM05D002254 ORTHO05D005423 2.1e-26 122.9 92 67.4
QL06p029474 Quercus lobata HOM05D002254 ORTHO05D005423 2.1e-26 122.9 90 67.8
GSVIVG01026526001 Vitis vinifera HOM05D002254 ORTHO05D005423 2.1e-26 122.9 96 65.6
Hund06402 Selenicereus undatus HOM05D002254 ORTHO05D005423 2.8e-26 122.5 96 66.7
Thhalv10014895m.g Eutrema salsugineum HOM05D002254 ORTHO05D005423 3.6e-26 122.1 96 62.5
Carub.0008s2544 Capsella rubella HOM05D002254 ORTHO05D005423 4.7e-26 121.7 96 63.5
Eucgr.H04941 Eucalyptus grandis HOM05D002254 ORTHO05D005423 4.7e-26 121.7 94 66.0
Peaxi162Scf00105g00116 Petunia axillaris HOM05D002254 ORTHO05D005423 4.7e-26 121.7 94 66.0
Phvul.009G148700 Phaseolus vulgaris HOM05D002254 ORTHO05D005423 4.7e-26 121.7 90 68.9
ATR0681G323 Amborella trichopoda HOM05D002254 ORTHO05D005423 6.2e-26 121.3 92 65.2
BcaC04g23302 Brassica carinata HOM05D002254 ORTHO05D005423 6.2e-26 121.3 96 62.5
Ciclev10026667m.g Citrus clementina HOM05D002254 ORTHO05D005423 6.2e-26 121.3 96 63.5
Glyma.06G151700 Glycine max HOM05D002254 ORTHO05D005423 6.2e-26 121.3 90 67.8
Sc06g0001400 Simmondsia chinensis HOM05D002254 ORTHO05D005423 6.2e-26 121.3 97 66.0
AT5G64650 Arabidopsis thaliana HOM05D002254 ORTHO05D005423 8.0e-26 120.9 96 62.5
Cpa.g.sc42.118 Carica papaya HOM05D002254 ORTHO05D005423 8.0e-26 120.9 91 68.1
HanXRQChr05g0152951 Helianthus annuus HOM05D002254 ORTHO05D005423 8.0e-26 120.9 92 67.4
Lsat_1_v5_gn_3_37780 Lactuca sativa HOM05D002254 ORTHO05D005423 1.1e-25 120.6 92 66.3
AL6G20170 Arabidopsis lyrata HOM05D002254 ORTHO05D005423 1.4e-25 120.2 96 61.5
VMungo1309G0562 Vigna mungo HOM05D002254 ORTHO05D005423 1.4e-25 120.2 87 69.0
arahy.Tifrunner.gnm1.ann1.FM41R7 Arachis hypogaea HOM05D002254 ORTHO05D005423 1.8e-25 119.8 89 65.2
arahy.Tifrunner.gnm1.ann1.N1TEIX Arachis hypogaea HOM05D002254 ORTHO05D005423 1.8e-25 119.8 89 65.2
EL10Ac5g11449 Beta vulgaris HOM05D002254 ORTHO05D005423 1.8e-25 119.8 92 72.8
Medtr8g103900 Medicago truncatula HOM05D002254 ORTHO05D005423 1.8e-25 119.8 96 64.6
arahy.Tifrunner.gnm1.ann1.2KW32D Arachis hypogaea HOM05D002254 ORTHO05D005423 2.3e-25 119.4 89 65.2
ECA246G3091 Erigeron canadensis HOM05D002254 ORTHO05D005423 2.3e-25 119.4 92 66.3
Medtr3g095900 Medicago truncatula HOM05D002254 ORTHO05D005423 2.3e-25 119.4 96 63.5
Sp2g27710 Schrenkiella parvula HOM05D002254 ORTHO05D005423 2.3e-25 119.4 96 62.5
Sed0005738 Sechium edule HOM05D002254 ORTHO05D005423 2.3e-25 119.4 96 66.7
HanXRQChr08g0236341 Helianthus annuus HOM05D002254 ORTHO05D005423 3.1e-25 119.0 92 66.3
AL8G42060 Arabidopsis lyrata HOM05D002254 ORTHO05D005423 4.0e-25 118.6 96 61.5
Glyma.04G214500 Glycine max HOM05D002254 ORTHO05D005423 4.0e-25 118.6 90 65.6
TPR.G34646 Trifolium pratense HOM05D002254 ORTHO05D005423 4.0e-25 118.6 96 64.6
Lj1g0024859 Lotus japonicus HOM05D002254 ORTHO05D005423 5.2e-25 118.2 96 63.5
PGR142G4456 Punica granatum HOM05D002254 ORTHO05D005423 5.2e-25 118.2 90 66.7
THA.LOC104799480 Tarenaya hassleriana HOM05D002254 ORTHO05D005423 5.2e-25 118.2 96 61.5
Ca_16929_v3 Cicer arietinum L. HOM05D002254 ORTHO05D005423 6.8e-25 117.9 97 63.9
AT5G09770 Arabidopsis thaliana HOM05D002254 ORTHO05D005423 8.9e-25 117.5 96 61.5
Aqoxy5G00323 Aquilegia oxysepala HOM05D002254 ORTHO05D005423 1.2e-24 117.1 96 64.6
Lalb_Chr08g0238481 Lupinus albus HOM05D002254 ORTHO05D005423 1.2e-24 117.1 90 64.4
Nn5g28635 Nelumbo nucifera HOM05D002254 ORTHO05D005423 1.2e-24 117.1 94 63.8
BcaB01g05660 Brassica carinata HOM05D002254 ORTHO05D005423 1.5e-24 116.7 96 61.5
Oeu047679.1 Olea europaea HOM05D002254 ORTHO05D005423 1.5e-24 116.7 92 63.0
Aa31LG3G17330 Aethionema arabicum HOM05D002254 ORTHO05D005423 2.6e-24 115.9 96 60.4
CiPaw.03G128400 Carya illinoinensis HOM05D002254 ORTHO05D005423 2.6e-24 115.9 88 65.9
Aa31LG1G17310 Aethionema arabicum HOM05D002254 ORTHO05D005423 4.4e-24 115.2 96 59.4
BcaB01g05562 Brassica carinata HOM05D002254 ORTHO05D005423 9.8e-24 114.0 96 60.4
C03p04680 Brassica napus HOM05D002254 ORTHO05D005423 9.8e-24 114.0 96 60.4
BolC3t13002H Brassica oleracea HOM05D002254 ORTHO05D005423 9.8e-24 114.0 96 60.4
BraA03t09768Z Brassica rapa HOM05D002254 ORTHO05D005423 9.8e-24 114.0 96 60.4
CARHR278620 Cardamine hirsuta HOM05D002254 ORTHO05D005423 9.8e-24 114.0 94 61.7
CDE04G0736 Ceratophyllum demersum HOM05D002254 ORTHO05D005423 2.2e-23 112.8 88 65.9
MD15G1337900 Malus domestica HOM05D002254 ORTHO05D005423 2.2e-23 112.8 92 60.9
unitig_8.g4580 Utricularia gibba HOM05D002254 ORTHO05D005423 2.2e-23 112.8 91 61.5
A03p04230 Brassica napus HOM05D002254 ORTHO05D005423 2.9e-23 112.5 91 62.6
PSO541G1616 Papaver somniferum HOM05D002254 ORTHO05D005423 2.9e-23 112.5 96 60.4
PSO675G8066 Papaver somniferum HOM05D002254 ORTHO05D005423 2.9e-23 112.5 96 61.5
HPP92_013266 Vanilla planifolia HOM05D002254 ORTHO05D005423 2.9e-23 112.5 92 60.9
HPP92_013271 Vanilla planifolia HOM05D002254 ORTHO05D005423 2.9e-23 112.5 92 60.9
Prupe.6G158000 Prunus persica HOM05D002254 ORTHO05D005423 3.7e-23 112.1 92 63.0
MELO3C008044.2 Cucumis melo HOM05D002254 ORTHO05D005423 6.4e-23 111.3 96 61.5
FvH4_3g14560 Fragaria vesca HOM05D002254 ORTHO05D005423 8.3e-23 110.9 97 59.8
FAN16G3547 Fragaria x ananassa HOM05D002254 ORTHO05D005423 8.3e-23 110.9 97 59.8
FAN21G0823 Fragaria x ananassa HOM05D002254 ORTHO05D005423 8.3e-23 110.9 97 59.8
Os01g0839300 Oryza sativa ssp. japonica HOM05D002254 ORTHO05D005423 8.3e-23 110.9 91 62.6
RcHm_v2.0_Chr5g0024011 Rosa chinensis HOM05D002254 ORTHO05D005423 8.3e-23 110.9 97 60.8
CsaV3_6G041770 Cucumis sativus L. HOM05D002254 ORTHO05D005423 1.4e-22 110.2 96 61.5
Thhalv10005089m.g Eutrema salsugineum HOM05D002254 ORTHO05D005423 4.1e-22 108.6 91 60.4
Zm00001eb368030 Zea mays HOM05D002254 ORTHO05D005423 5.4e-22 108.2 94 57.4
FAN11G0976 Fragaria x ananassa HOM05D002254 ORTHO05D005423 7.0e-22 107.8 97 58.8
THA.LOC104818462 Tarenaya hassleriana HOM05D002254 ORTHO05D005423 1.2e-21 107.1 92 59.8
ClCG01G015530 Citrullus lanatus HOM05D002254 ORTHO05D005423 6.0e-21 104.8 92 60.9
BolC3t13004H Brassica oleracea HOM05D002254 ORTHO05D005423 1.0e-20 104.0 97 56.7
MD01G1012100 Malus domestica HOM05D002254 ORTHO05D005423 1.0e-20 104.0 80 62.5
Sp6g33620 Schrenkiella parvula HOM05D002254 ORTHO05D005423 1.0e-20 104.0 78 64.1
MBI10_g06742_MAGBIO Magnolia biondii HOM05D002254 ORTHO05D005423 1.8e-17 93.2 72 66.7
SEGI_31183 Sequoiadendron giganteum HOM05D002254 ORTHO05D005423 7.5e-16 87.8 84 54.8
CARHR203630 Cardamine hirsuta HOM05D002254 ORTHO05D005423 8.3e-15 84.3 82 52.4
Os05g0460700 Oryza sativa ssp. japonica HOM05D002254 ORTHO05D005423 1.4e-14 83.6 44 86.4
DCAR_005761 Daucus carota HOM05D002254 ORTHO05D005423 2.4e-14 82.8 44 84.1
Gohir.D01G113350 Gossypium hirsutum HOM05D002254 ORTHO05D005423 4.1e-14 82.0 44 88.6
SHI11445 Sapria himalayana HOM05D002254 ORTHO05D005423 7.1e-14 81.3 44 81.8
Sabra07G0087600 Salix brachista HOM05D002254 ORTHO05D005423 1.2e-13 80.5 44 84.1
CSS0017576 Camellia sinensis var. sinensis HOM05D002254 ORTHO05D005423 3.5e-13 79.0 44 81.8
Gorai.002G138500 Gossypium raimondii HOM05D002254 ORTHO05D005423 4.6e-13 78.6 44 86.4
Mapoly0072s0005 Marchantia polymorpha HOM05D002254 ORTHO05D005423 1.9e-11 73.2 88 45.5
Pp3c16_7040 Physcomitrium patens HOM05D002254 ORTHO05D005423 7.3e-11 71.2 79 44.3
CBR_g41367 Chara braunii HOM05D002254 ORTHO05D005423 2.1e-10 69.7 88 43.2
EL10Ac1g01201 Beta vulgaris HOM05D002254 ORTHO05D005423 6.8e-09 64.7 51 68.6
AagrBONN_evm.TU.Sc2ySwM_344.4427 Anthoceros agrestis HOM05D002254 ORTHO05D005423 8.9e-09 64.3 77 49.4
Lalb_Chr11g0068331 Lupinus albus HOM05D002254 ORTHO05D005423 6.4e-07 58.2 50 60.0
C03p61540 Brassica napus HOM05D002254 ORTHO05D005423 3.2e-06 55.8 38 65.8
BolC3t18414H Brassica oleracea HOM05D002254 ORTHO05D005423 3.2e-06 55.8 38 65.8
Sabra05G0051900 Salix brachista HOM05D002254 ORTHO05D005423 5.4e-06 55.1 41 63.4
Phvul.009G111900 Phaseolus vulgaris HOM05D002254 ORTHO05D005423 9.2e-06 54.3 44 65.9


User provided reference genes

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