Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 0.0e+00 1285.8 655 100.0
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 2.9e-301 1038.1 660 83.0
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 3.9e-298 1027.7 659 83.2
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 9.0e-279 963.4 661 79.3
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.2e-227 793.5 717 62.3
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 2.1e-227 792.7 538 77.0
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 1.7e-224 783.1 681 65.3
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.7e-221 773.1 681 65.3
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 8.6e-221 770.8 681 64.8
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 2.6e-217 759.2 680 62.8
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 5.4e-215 751.5 675 63.6
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 7.8e-214 747.7 690 63.6
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 7.8e-214 747.7 697 61.7
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.7e-213 746.5 671 65.4
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 1.5e-212 743.4 701 61.5
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.6e-211 740.0 688 61.0
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 4.7e-211 738.4 711 59.2
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.2e-209 733.8 679 61.0
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.2e-209 733.8 696 59.3
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 9.8e-209 730.7 688 60.5
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 9.8e-209 730.7 697 60.3
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 3.7e-208 728.8 684 61.3
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 1.7e-205 719.9 711 61.9
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 4.7e-203 711.8 692 59.1
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 9.8e-201 704.1 697 59.8
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 6.4e-200 701.4 703 57.6
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 1.4e-199 700.3 690 61.3
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 1.4e-199 700.3 694 59.1
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 1.9e-199 699.9 697 59.4
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.9e-199 699.9 690 61.0
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 2.4e-199 699.5 687 61.1
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 2.4e-199 699.5 680 60.1
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 3.2e-199 699.1 690 60.4
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 3.2e-199 699.1 684 61.5
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 5.4e-199 698.4 718 57.7
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 5.4e-199 698.4 684 61.4
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.6e-198 696.8 684 61.0
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.1e-198 696.4 683 60.8
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.1e-198 696.4 682 60.9
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 1.0e-197 694.1 695 59.6
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 1.0e-197 694.1 713 56.9
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 1.0e-197 694.1 670 61.0
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 1.7e-197 693.3 691 58.6
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.0e-197 692.6 688 59.7
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 3.9e-197 692.2 709 57.8
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 1.5e-196 690.3 685 58.1
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 2.5e-196 689.5 692 60.4
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 2.5e-196 689.5 715 56.9
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 8.1e-195 684.5 636 61.2
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.4e-194 683.7 700 57.0
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 4.0e-194 682.2 698 57.2
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 2.6e-193 679.5 719 56.5
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 5.8e-193 678.3 698 56.6
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 1.7e-192 676.8 689 58.5
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 4.1e-191 672.2 699 58.5
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 9.2e-191 671.0 694 58.9
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 4.6e-190 668.7 703 56.8
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 6.0e-190 668.3 696 57.3
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 1.3e-189 667.2 692 58.8
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 3.9e-189 665.6 712 55.2
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 2.5e-188 662.9 679 58.0
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 2.1e-187 659.8 710 56.8
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 4.0e-186 655.6 678 58.1
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 1.7e-184 650.2 700 56.1
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 4.9e-184 648.7 697 55.4
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 4.2e-183 645.6 681 57.4
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 5.4e-183 645.2 679 58.0
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 2.3e-181 639.8 709 54.6
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 3.0e-181 639.4 691 57.7
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 8.7e-181 637.9 691 56.9
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 8.7e-181 637.9 694 55.8
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 2.5e-180 636.3 680 57.2
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 5.6e-180 635.2 683 56.5
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 9.6e-180 634.4 695 58.6
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 5.3e-178 628.6 618 57.4
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 7.6e-177 624.8 685 55.6
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 4.9e-176 622.1 676 57.2
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 6.4e-176 621.7 700 55.6
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 1.4e-175 620.5 694 56.5
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 3.2e-175 619.4 675 57.2
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 9.3e-175 617.8 739 51.8
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 1.6e-174 617.1 705 53.6
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 2.8e-171 606.3 706 55.0
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 4.0e-170 602.4 677 54.7
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 1.3e-168 597.4 657 57.4
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 1.7e-168 597.0 715 55.8
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 1.4e-167 594.0 671 55.0
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 1.9e-167 593.6 671 55.0
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 7.1e-167 591.7 690 55.1
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 4.6e-166 589.0 679 53.9
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 4.6e-166 589.0 683 54.0
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 1.3e-165 587.4 671 54.4
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.9e-164 583.6 540 59.4
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.3e-164 582.8 705 52.9
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 4.8e-163 578.9 677 53.3
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.0e-162 575.9 738 51.4
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 3.8e-160 569.3 631 58.2
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 5.5e-159 565.5 714 52.2
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 5.5e-159 565.5 480 65.2
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 1.8e-154 550.4 569 55.9
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 7.6e-153 545.0 533 57.6
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 1.7e-152 543.9 561 55.8
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 4.2e-151 539.3 560 55.7
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 3.6e-142 509.6 529 55.6
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 3.7e-139 499.6 551 53.7
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 4.1e-138 496.1 531 54.8
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 3.8e-136 489.6 591 51.6
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 1.4e-130 471.1 434 63.1
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 4.4e-124 449.5 691 45.2
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.8e-122 444.1 706 43.2
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 2.4e-106 390.6 346 61.8
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.0e-101 375.2 348 62.6
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 1.5e-100 371.3 391 54.5
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 2.9e-99 367.1 329 61.1
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 5.4e-98 362.8 318 62.6
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 2.7e-97 360.5 329 59.9
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 3.5e-97 360.1 349 63.9
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 9.2e-90 335.5 659 39.2
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 4.1e-82 310.1 830 31.2
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 1.3e-80 305.1 832 32.3
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 1.0e-72 278.9 370 47.3
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 2.5e-71 274.2 365 49.6
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 6.0e-65 253.1 327 52.6
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 8.7e-64 249.2 316 52.2
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.4e-59 233.0 296 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 9.9e-52 209.1 406 38.4
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 4.9e-51 206.8 293 45.4
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.5e-47 195.3 207 56.0
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 2.3e-40 171.4 143 65.7
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 3.0e-40 171.0 180 47.2
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.1e-38 164.9 211 48.8
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.0e-35 156.0 268 39.9
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.1e-29 134.0 125 59.2
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 3.4e-28 131.0 131 55.7
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 5.0e-27 127.1 121 57.0
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.4e-24 119.0 149 63.8
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 1.3e-19 102.4 783 22.1
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 4.8e-14 84.0 74 63.5
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 6.3e-14 83.6 79 58.2
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 3.3e-07 61.2 62 46.8
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 3.7e-06 57.8 51 47.1
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 4.8e-06 57.4 59 45.8
Lj5P134T60 Lonicera japonica HOM05D000874 ORTHO05D001267 8.2e-06 56.6 51 47.1


User provided reference genes

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