Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 2.1e-232 808.5 377 100.0
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 5.0e-205 717.6 372 87.4
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 2.3e-202 708.8 373 86.6
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 7.4e-201 703.7 373 86.6
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.2e-198 696.4 373 86.1
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.0e-194 683.3 372 83.3
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 3.0e-194 681.8 372 82.0
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 3.9e-194 681.4 372 80.4
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.3e-192 676.4 393 79.6
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 6.9e-191 670.6 374 79.4
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 7.7e-190 667.2 373 80.4
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 1.7e-189 666.0 374 80.2
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 1.7e-189 666.0 373 78.8
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 1.9e-188 662.5 374 78.9
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 1.2e-187 659.8 373 79.4
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 2.7e-187 658.7 374 79.9
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.8e-186 656.0 379 78.9
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 2.3e-186 655.6 368 79.3
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.9e-186 654.8 374 79.9
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 3.9e-186 654.8 372 79.6
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.8e-186 653.7 374 77.8
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 8.8e-186 653.7 373 78.0
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.1e-185 653.3 372 79.0
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.5e-185 652.9 374 77.8
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 1.5e-185 652.9 368 80.2
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 3.3e-185 651.7 372 79.0
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 4.4e-185 651.4 373 79.1
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 4.8e-184 647.9 371 79.8
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.1e-183 646.7 371 77.9
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 1.4e-183 646.4 371 77.9
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 1.4e-183 646.4 371 77.4
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 1.4e-183 646.4 371 78.4
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 1.8e-183 646.0 372 79.8
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.4e-183 645.6 372 79.8
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 3.1e-183 645.2 372 78.0
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 4.1e-183 644.8 373 76.1
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 4.1e-183 644.8 371 77.6
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 5.3e-183 644.4 371 77.6
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 7.0e-183 644.0 368 78.8
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 9.1e-183 643.7 373 77.5
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 9.1e-183 643.7 373 78.0
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 1.2e-182 643.3 368 78.5
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 3.5e-182 641.7 372 77.4
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 5.9e-182 641.0 384 76.6
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 5.9e-182 641.0 373 77.7
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 5.9e-182 641.0 373 75.9
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 5.9e-182 641.0 372 77.4
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 1.3e-181 639.8 373 76.4
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 3.8e-181 638.3 372 77.7
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 3.8e-181 638.3 372 78.0
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 5.0e-181 637.9 374 77.0
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 4.2e-180 634.8 373 75.6
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 7.2e-180 634.0 373 75.3
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 7.2e-180 634.0 374 75.7
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 2.1e-179 632.5 368 76.6
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 6.1e-179 630.9 372 76.6
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.4e-178 629.8 373 76.1
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 2.3e-178 629.0 372 76.6
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 3.0e-178 628.6 372 75.0
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.6e-177 625.5 373 75.3
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 3.3e-177 625.2 380 75.5
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 4.4e-177 624.8 375 74.7
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 4.4e-177 624.8 374 75.9
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 9.7e-177 623.6 372 75.3
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 1.3e-176 623.2 372 74.2
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.3e-176 623.2 371 76.8
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.2e-176 622.5 375 74.4
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 2.8e-176 622.1 372 74.7
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 4.8e-176 621.3 373 74.8
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 4.8e-176 621.3 367 76.3
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.1e-175 620.2 373 74.3
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.1e-175 620.2 368 74.7
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 9.1e-175 617.1 374 74.1
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 1.6e-174 616.3 375 74.1
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 3.5e-174 615.1 371 74.9
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 4.5e-174 614.8 373 74.3
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 5.9e-174 614.4 368 74.7
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 1.3e-173 613.2 375 73.6
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.3e-173 613.2 372 74.5
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 2.2e-173 612.5 374 74.3
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 2.2e-173 612.5 374 74.6
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 2.2e-173 612.5 370 76.2
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 3.8e-173 611.7 373 73.7
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 3.8e-173 611.7 360 77.8
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 5.0e-173 611.3 373 74.5
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 8.5e-173 610.5 375 73.6
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 1.9e-172 609.4 373 74.3
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 2.5e-172 609.0 458 64.0
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 3.2e-172 608.6 374 74.3
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 4.2e-172 608.2 376 73.9
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 4.2e-172 608.2 373 73.5
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 1.6e-171 606.3 372 74.5
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 1.8e-170 602.8 401 68.6
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.3e-170 602.4 349 79.4
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 8.8e-170 600.5 372 73.4
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 2.6e-169 599.0 372 74.5
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 2.8e-168 595.5 421 67.7
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 3.7e-168 595.1 375 71.7
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 4.8e-168 594.7 383 71.3
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 5.9e-166 587.8 376 71.8
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.5e-164 582.4 406 68.5
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 3.2e-164 582.0 346 76.3
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 7.2e-164 580.9 377 71.9
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 6.1e-163 577.8 373 70.8
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.4e-162 576.6 377 69.5
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.8e-162 576.2 369 68.6
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 2.3e-162 575.9 374 71.7
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 2.8e-160 568.9 403 66.5
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 8.0e-155 550.8 371 66.0
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 2.3e-154 549.3 375 68.5
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 8.9e-154 547.4 360 69.2
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 3.4e-153 545.4 368 65.8
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 7.5e-153 544.3 373 66.2
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 5.4e-151 538.1 308 78.6
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 2.7e-150 535.8 368 66.3
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 4.6e-150 535.0 371 65.2
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.3e-141 506.9 411 58.9
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 5.2e-138 495.0 293 75.4
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.0e-133 480.7 372 63.7
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 8.6e-133 477.6 385 59.7
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 1.7e-128 463.4 274 75.9
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 2.7e-110 402.9 346 56.9
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 1.8e-106 390.2 385 51.4
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 4.9e-104 382.1 218 77.5
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.7e-101 371.7 250 69.2
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.3e-99 367.5 373 51.5
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.1e-99 364.8 229 70.7
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 6.9e-98 361.7 385 47.5
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.9e-96 355.5 231 70.1
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 3.3e-92 342.8 382 46.6
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 6.9e-90 335.1 400 45.5
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.2e-83 311.6 196 71.9
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.2e-80 303.5 165 79.4
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 1.8e-74 283.9 166 75.9
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 3.8e-64 249.6 171 69.6
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.1e-47 194.9 475 29.9
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 2.2e-43 180.6 93 82.8
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.3e-37 160.6 129 66.7
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 1.7e-32 144.4 104 67.3
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 1.7e-32 144.4 102 66.7
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 9.5e-31 138.7 78 78.2
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 1.3e-27 128.3 92 66.3
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 2.3e-24 117.5 339 28.3
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.7e-16 91.3 163 34.4
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 1.1e-15 88.6 43 90.7
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 1.2e-14 85.1 46 82.6
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 2.8e-14 84.0 47 78.7
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 1.1e-13 82.0 45 80.0
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 4.9e-11 73.2 40 80.0
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 3.6e-06 57.0 44 50.0
RcHm_v2.0_Chr4g0407271 Rosa chinensis HOM05D004692 ORTHO05D342244 6.2e-06 56.2 65 43.1


User provided reference genes

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